Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: A2BP1 Sequence: fasta or formatted (397aa) NCBI GI: 22538403
Description:

ataxin 2-binding protein 1 isoform 4

Referenced in:

Cerebellum
RNA-binding Proteins

Other entries for this name:
alt prot [370aa] ataxin 2-binding protein 1 isoform 5
alt mRNA [397aa] ataxin 2-binding protein 1 isoform 4
alt prot [418aa] ataxin 2-binding protein 1 isoform 1
alt prot [392aa] ataxin 2-binding protein 1 isoform 2
alt prot [395aa] ataxin 2-binding protein 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.6         58           4
 C cysteine            0.5          2           1
 D aspartate           4.3         17           2
 E glutamate           4.3         17           1
 F phenylalanine       3.8         15           1
 G glycine             8.1         32           2
 H histidine           2.5         10           2
 I isoleucine          2.3          9           2
 K lysine              2.5         10           2
 L leucine             4.3         17           2
 M methionine          1.8          7           1
 N asparagine          4.8         19           2
 P proline             9.6         38           4
 Q glutamine           5.3         21           1
 R arginine            5.3         21           1
 S serine              5.8         23           2
 T threonine           7.8         31           2
 V valine              5.5         22           2
 W tryptophan          0.3          1           1
 Y tyrosine            6.8         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ataxin 2-binding protein 1 isoform 4 
A2BP1                 1.000   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.952   ataxin 2-binding protein 1 isoform 1 
A2BP1                 0.914   ataxin 2-binding protein 1 isoform 5 
A2BP1                 0.871   ataxin 2-binding protein 1 isoform 2 
A2BP1                 0.783   ataxin 2-binding protein 1 isoform 3 
HRNBP3                0.567   hexaribonucleotide binding protein 3 
RBM9                  0.559   RNA binding motif protein 9 isoform 5 
RBM9                  0.550   RNA binding motif protein 9 isoform 6 
RBM9                  0.550   RNA binding motif protein 9 isoform 1 
RBM9                  0.547   RNA binding motif protein 9 isoform 3 
RBM9                  0.420   RNA binding motif protein 9 isoform 2 
RBM9                  0.414   RNA binding motif protein 9 isoform 4 
DAZAP1                0.048   DAZ associated protein 1 isoform a 
DAZAP1                0.048   DAZ associated protein 1 isoform b 
BOLL                  0.047   boule isoform 1 
BOLL                  0.045   boule isoform 2 
PABPC4                0.043   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.043   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.043   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC3                0.043   poly(A) binding protein, cytoplasmic 3 
TRA2B                 0.043   splicing factor, arginine/serine-rich 10 
PABPC1                0.043   poly(A) binding protein, cytoplasmic 1 
SFPQ                  0.042   splicing factor proline/glutamine rich (polypyrimidin...
RBM39                 0.040   RNA binding motif protein 39 isoform b 
RBM39                 0.040   RNA binding motif protein 39 isoform a 
DAZ1                  0.039   deleted in azoospermia 
SLTM                  0.039   modulator of estrogen induced transcription isoform ...
SLTM                  0.039   modulator of estrogen induced transcription isoform ...
DAZ4                  0.039   deleted in azoospermia 4 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press