Search of human proteins with 71999153

Search of human proteins with 71999153

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|71999153 hypothetical protein LOC23334 [Homo sapiens]
         (2533 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|71999153 hypothetical protein LOC23334 [Homo sapiens]             5167   0.0  
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      42   0.008
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]      42   0.008
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]       42   0.008
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]       42   0.008
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]       42   0.008
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]       42   0.008
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]       42   0.008
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]        42   0.008
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]        42   0.008
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]        42   0.008
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]        42   0.008
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]        42   0.008
gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]        42   0.008
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 42   0.010
gi|22748805 hypothetical protein LOC127703 [Homo sapiens]              41   0.017
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       40   0.022
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   40   0.022
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]     40   0.029
gi|122937271 WAS protein homolog associated with actin, golgi me...    40   0.029
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    40   0.029
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    40   0.029
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    40   0.038
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    40   0.038
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     40   0.038
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]       40   0.038
gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens]        40   0.038
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]         39   0.065
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      39   0.065
gi|56549696 E1A binding protein p400 [Homo sapiens]                    39   0.065

>gi|71999153 hypothetical protein LOC23334 [Homo sapiens]
          Length = 2533

 Score = 5167 bits (13402), Expect = 0.0
 Identities = 2533/2533 (100%), Positives = 2533/2533 (100%)

Query: 1    MVLELPIQNEPPGQAAAEEKHTCVVQYILFPPHSTSTKDSFSTDDDNDVEVEALEGDSEL 60
            MVLELPIQNEPPGQAAAEEKHTCVVQYILFPPHSTSTKDSFSTDDDNDVEVEALEGDSEL
Sbjct: 1    MVLELPIQNEPPGQAAAEEKHTCVVQYILFPPHSTSTKDSFSTDDDNDVEVEALEGDSEL 60

Query: 61   NLVTEVWVEPQYGRVGPGPGIWKHLQDLTYSEIPQALHPRDAACIGSMLSFEYLIQLCQS 120
            NLVTEVWVEPQYGRVGPGPGIWKHLQDLTYSEIPQALHPRDAACIGSMLSFEYLIQLCQS
Sbjct: 61   NLVTEVWVEPQYGRVGPGPGIWKHLQDLTYSEIPQALHPRDAACIGSMLSFEYLIQLCQS 120

Query: 121  KEWGPLPPEPRVSDGLDQGGDTCVHEIPFHFDLMGLLPQCQQLQMFFLLLARGAEGPLLG 180
            KEWGPLPPEPRVSDGLDQGGDTCVHEIPFHFDLMGLLPQCQQLQMFFLLLARGAEGPLLG
Sbjct: 121  KEWGPLPPEPRVSDGLDQGGDTCVHEIPFHFDLMGLLPQCQQLQMFFLLLARGAEGPLLG 180

Query: 181  VHGIPKEQAVGSTQATGDSAFTSLSVGLPETLKPLISAQPPQWRCYARLVNPQHVFLTFL 240
            VHGIPKEQAVGSTQATGDSAFTSLSVGLPETLKPLISAQPPQWRCYARLVNPQHVFLTFL
Sbjct: 181  VHGIPKEQAVGSTQATGDSAFTSLSVGLPETLKPLISAQPPQWRCYARLVNPQHVFLTFL 240

Query: 241  PATFSDVQRLAACGLEGPPQEETKPKFGDWSGAPSLKDLGGTGIKATKSHVPVLSVTLAS 300
            PATFSDVQRLAACGLEGPPQEETKPKFGDWSGAPSLKDLGGTGIKATKSHVPVLSVTLAS
Sbjct: 241  PATFSDVQRLAACGLEGPPQEETKPKFGDWSGAPSLKDLGGTGIKATKSHVPVLSVTLAS 300

Query: 301  DNAQNQGELSPPFRRDLQAYAGRQASQTESADGPRTRCPVYIYSCSLEALREQMVGMQPP 360
            DNAQNQGELSPPFRRDLQAYAGRQASQTESADGPRTRCPVYIYSCSLEALREQMVGMQPP
Sbjct: 301  DNAQNQGELSPPFRRDLQAYAGRQASQTESADGPRTRCPVYIYSCSLEALREQMVGMQPP 360

Query: 361  QAPRDLIFRTQFLDHPSPSSAWMEPRYKEAANHCALLQEHAQRCYVRGLFRSLQQAQSVT 420
            QAPRDLIFRTQFLDHPSPSSAWMEPRYKEAANHCALLQEHAQRCYVRGLFRSLQQAQSVT
Sbjct: 361  QAPRDLIFRTQFLDHPSPSSAWMEPRYKEAANHCALLQEHAQRCYVRGLFRSLQQAQSVT 420

Query: 421  SQDLLTAVDACEELLQEIDITPFLLALCGHTWGLPHAPPSPGPLSPGPFSSSMEEGAEPR 480
            SQDLLTAVDACEELLQEIDITPFLLALCGHTWGLPHAPPSPGPLSPGPFSSSMEEGAEPR
Sbjct: 421  SQDLLTAVDACEELLQEIDITPFLLALCGHTWGLPHAPPSPGPLSPGPFSSSMEEGAEPR 480

Query: 481  ERAILASESSIETEDLSEPEFQSTRVPGIPDPGPEISLTDVCQLRGEAHGALHSVIQEKF 540
            ERAILASESSIETEDLSEPEFQSTRVPGIPDPGPEISLTDVCQLRGEAHGALHSVIQEKF
Sbjct: 481  ERAILASESSIETEDLSEPEFQSTRVPGIPDPGPEISLTDVCQLRGEAHGALHSVIQEKF 540

Query: 541  LEISRLHFRTVPSNPHYFFYCPPSSRREDEGPRDTVDRKISDLEFSEAELMGEEGDTSAC 600
            LEISRLHFRTVPSNPHYFFYCPPSSRREDEGPRDTVDRKISDLEFSEAELMGEEGDTSAC
Sbjct: 541  LEISRLHFRTVPSNPHYFFYCPPSSRREDEGPRDTVDRKISDLEFSEAELMGEEGDTSAC 600

Query: 601  CVVTESDPELEVEYRESRESDLGPAGLDSASLSDVDTVNPDEDSFSILGGDSPTGPESFL 660
            CVVTESDPELEVEYRESRESDLGPAGLDSASLSDVDTVNPDEDSFSILGGDSPTGPESFL
Sbjct: 601  CVVTESDPELEVEYRESRESDLGPAGLDSASLSDVDTVNPDEDSFSILGGDSPTGPESFL 660

Query: 661  HDLPPLFLHLTCSVRLRGQHSSVPVCSLPTCLGQVLSSLEGPPVGGRVPLRDLSVTLDVF 720
            HDLPPLFLHLTCSVRLRGQHSSVPVCSLPTCLGQVLSSLEGPPVGGRVPLRDLSVTLDVF
Sbjct: 661  HDLPPLFLHLTCSVRLRGQHSSVPVCSLPTCLGQVLSSLEGPPVGGRVPLRDLSVTLDVF 720

Query: 721  MLTLPLEVELPTASDPQHHRSTSESSASFPRSPGQPSSLRSDDGLGPPLPPPEEERHPGL 780
            MLTLPLEVELPTASDPQHHRSTSESSASFPRSPGQPSSLRSDDGLGPPLPPPEEERHPGL
Sbjct: 721  MLTLPLEVELPTASDPQHHRSTSESSASFPRSPGQPSSLRSDDGLGPPLPPPEEERHPGL 780

Query: 781  SNLATPHRLAIETTMNEIRWLLEDEMVGALRRGGIPQSPALHRAAAHIHSSPGRSTCLRQ 840
            SNLATPHRLAIETTMNEIRWLLEDEMVGALRRGGIPQSPALHRAAAHIHSSPGRSTCLRQ
Sbjct: 781  SNLATPHRLAIETTMNEIRWLLEDEMVGALRRGGIPQSPALHRAAAHIHSSPGRSTCLRQ 840

Query: 841  TLPLSFVFGPERSLTQFKEEFRRLHLPGHVLLEDPDSGFFFVAAGQQPGGSHGEPSSAAW 900
            TLPLSFVFGPERSLTQFKEEFRRLHLPGHVLLEDPDSGFFFVAAGQQPGGSHGEPSSAAW
Sbjct: 841  TLPLSFVFGPERSLTQFKEEFRRLHLPGHVLLEDPDSGFFFVAAGQQPGGSHGEPSSAAW 900

Query: 901  AWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPGPSRGLSLMSSQ 960
            AWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPGPSRGLSLMSSQ
Sbjct: 901  AWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPGPSRGLSLMSSQ 960

Query: 961  GSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQPSLSGLPGPCLPDFWL 1020
            GSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQPSLSGLPGPCLPDFWL
Sbjct: 961  GSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQPSLSGLPGPCLPDFWL 1020

Query: 1021 IVRVLQDRVEVYAHARSLIREDGGPGTECRHLQQLLVRRVGEICREVNQRLLLQDLHDSH 1080
            IVRVLQDRVEVYAHARSLIREDGGPGTECRHLQQLLVRRVGEICREVNQRLLLQDLHDSH
Sbjct: 1021 IVRVLQDRVEVYAHARSLIREDGGPGTECRHLQQLLVRRVGEICREVNQRLLLQDLHDSH 1080

Query: 1081 VCNSLLVAESEEDLWRSETPFHSRQRAPLPSDDYAADESCAPRGYLAATMQFVPGHFSCD 1140
            VCNSLLVAESEEDLWRSETPFHSRQRAPLPSDDYAADESCAPRGYLAATMQFVPGHFSCD
Sbjct: 1081 VCNSLLVAESEEDLWRSETPFHSRQRAPLPSDDYAADESCAPRGYLAATMQFVPGHFSCD 1140

Query: 1141 VVWGTVIRVHSRLKMGPSMGVSRAIQALRSVLNAFSVVNRKNMFVYQERATKAVYYLRLL 1200
            VVWGTVIRVHSRLKMGPSMGVSRAIQALRSVLNAFSVVNRKNMFVYQERATKAVYYLRLL
Sbjct: 1141 VVWGTVIRVHSRLKMGPSMGVSRAIQALRSVLNAFSVVNRKNMFVYQERATKAVYYLRLL 1200

Query: 1201 ETSCSDRPWKGDALPPSLALSRSQEPIYSEEASGPRSPLDMVSSRSSDAARPVGQVDRHI 1260
            ETSCSDRPWKGDALPPSLALSRSQEPIYSEEASGPRSPLDMVSSRSSDAARPVGQVDRHI
Sbjct: 1201 ETSCSDRPWKGDALPPSLALSRSQEPIYSEEASGPRSPLDMVSSRSSDAARPVGQVDRHI 1260

Query: 1261 QLLVHGVGQAGPEITDELVRVLCRRLDEATLDVITVMLVRNCKLTPADVEFIQPPGSLPS 1320
            QLLVHGVGQAGPEITDELVRVLCRRLDEATLDVITVMLVRNCKLTPADVEFIQPPGSLPS
Sbjct: 1261 QLLVHGVGQAGPEITDELVRVLCRRLDEATLDVITVMLVRNCKLTPADVEFIQPPGSLPS 1320

Query: 1321 EVLHLALPTSCRPWLPALAWYLRQNLLIFLHSPKYTDSNSRNHFQHPLPPQGGLPDLDIY 1380
            EVLHLALPTSCRPWLPALAWYLRQNLLIFLHSPKYTDSNSRNHFQHPLPPQGGLPDLDIY
Sbjct: 1321 EVLHLALPTSCRPWLPALAWYLRQNLLIFLHSPKYTDSNSRNHFQHPLPPQGGLPDLDIY 1380

Query: 1381 LYNKPGGQGTGGKGVACITLAFVDEGGAPLSLALWPPSSPGPPDPLREEEFEQLTQVIRC 1440
            LYNKPGGQGTGGKGVACITLAFVDEGGAPLSLALWPPSSPGPPDPLREEEFEQLTQVIRC
Sbjct: 1381 LYNKPGGQGTGGKGVACITLAFVDEGGAPLSLALWPPSSPGPPDPLREEEFEQLTQVIRC 1440

Query: 1441 PVVVDSSSAQNGAPRLRLDVWEKGNISIVQLEEKLRGAARQALADAIIELQLLPASLCTE 1500
            PVVVDSSSAQNGAPRLRLDVWEKGNISIVQLEEKLRGAARQALADAIIELQLLPASLCTE
Sbjct: 1441 PVVVDSSSAQNGAPRLRLDVWEKGNISIVQLEEKLRGAARQALADAIIELQLLPASLCTE 1500

Query: 1501 DTPTGSLRNGSLETKSSAGRASTFPPAPVPGEPVTPPSKAGRRSFWDMLSKTECGDLGSP 1560
            DTPTGSLRNGSLETKSSAGRASTFPPAPVPGEPVTPPSKAGRRSFWDMLSKTECGDLGSP
Sbjct: 1501 DTPTGSLRNGSLETKSSAGRASTFPPAPVPGEPVTPPSKAGRRSFWDMLSKTECGDLGSP 1560

Query: 1561 KTTDDIVLDRPEDTRGRRRHKTESVRTPGGAERAPGSDSGAQRQKRRTTQLEEGEVGTLH 1620
            KTTDDIVLDRPEDTRGRRRHKTESVRTPGGAERAPGSDSGAQRQKRRTTQLEEGEVGTLH
Sbjct: 1561 KTTDDIVLDRPEDTRGRRRHKTESVRTPGGAERAPGSDSGAQRQKRRTTQLEEGEVGTLH 1620

Query: 1621 PVFARVAQRWMEFMVQIGCASVSRSSAHMVSRFLLPSILSEFTALVTSMAGDTSVRIFEQ 1680
            PVFARVAQRWMEFMVQIGCASVSRSSAHMVSRFLLPSILSEFTALVTSMAGDTSVRIFEQ
Sbjct: 1621 PVFARVAQRWMEFMVQIGCASVSRSSAHMVSRFLLPSILSEFTALVTSMAGDTSVRIFEQ 1680

Query: 1681 HLGSEPEIFGPCSPGQLGPSPRPAAERHLLLLGRNFLQWRRPTQQAAKAMQRFEPGGDGS 1740
            HLGSEPEIFGPCSPGQLGPSPRPAAERHLLLLGRNFLQWRRPTQQAAKAMQRFEPGGDGS
Sbjct: 1681 HLGSEPEIFGPCSPGQLGPSPRPAAERHLLLLGRNFLQWRRPTQQAAKAMQRFEPGGDGS 1740

Query: 1741 SGRNAPRQRLLLLEVVDKKLQLLTYNWAPDLGAALGRALVRLVQWQNARAHLIFCLLSQK 1800
            SGRNAPRQRLLLLEVVDKKLQLLTYNWAPDLGAALGRALVRLVQWQNARAHLIFCLLSQK
Sbjct: 1741 SGRNAPRQRLLLLEVVDKKLQLLTYNWAPDLGAALGRALVRLVQWQNARAHLIFCLLSQK 1800

Query: 1801 LGLFHHYGQLDFPVRDEKEPNPFLLPTMEVETLIRSASPPLSREQGRLSGSSRGGGPLPL 1860
            LGLFHHYGQLDFPVRDEKEPNPFLLPTMEVETLIRSASPPLSREQGRLSGSSRGGGPLPL
Sbjct: 1801 LGLFHHYGQLDFPVRDEKEPNPFLLPTMEVETLIRSASPPLSREQGRLSGSSRGGGPLPL 1860

Query: 1861 DTFPFDEALRDITAARPSSVLGPVPRPPDPVTYHGQQFLEIKMAERRELERQMKMENLFV 1920
            DTFPFDEALRDITAARPSSVLGPVPRPPDPVTYHGQQFLEIKMAERRELERQMKMENLFV
Sbjct: 1861 DTFPFDEALRDITAARPSSVLGPVPRPPDPVTYHGQQFLEIKMAERRELERQMKMENLFV 1920

Query: 1921 TWQQRSTPATMPISAGELETLKQSSRLVHYCATAMLFDPAAWLHGPPETSGPPDGQRRHR 1980
            TWQQRSTPATMPISAGELETLKQSSRLVHYCATAMLFDPAAWLHGPPETSGPPDGQRRHR
Sbjct: 1921 TWQQRSTPATMPISAGELETLKQSSRLVHYCATAMLFDPAAWLHGPPETSGPPDGQRRHR 1980

Query: 1981 PESGSGSREAPTSCESLDVSPPGAREEPWLKELSLAFLQQYVQYLQSIGFVLVPLRPPSP 2040
            PESGSGSREAPTSCESLDVSPPGAREEPWLKELSLAFLQQYVQYLQSIGFVLVPLRPPSP
Sbjct: 1981 PESGSGSREAPTSCESLDVSPPGAREEPWLKELSLAFLQQYVQYLQSIGFVLVPLRPPSP 2040

Query: 2041 ARSTSRPRAMAILGTEGRGSFSCPKTKTDGSPKSTSSPVTTYHLQRALPGGIILMELAFQ 2100
            ARSTSRPRAMAILGTEGRGSFSCPKTKTDGSPKSTSSPVTTYHLQRALPGGIILMELAFQ
Sbjct: 2041 ARSTSRPRAMAILGTEGRGSFSCPKTKTDGSPKSTSSPVTTYHLQRALPGGIILMELAFQ 2100

Query: 2101 GCYFCVKQFALECSRIPMGQAVNSQLSMLFTEECDKVRDLMHVHSFSYDFHLRLVHQHVL 2160
            GCYFCVKQFALECSRIPMGQAVNSQLSMLFTEECDKVRDLMHVHSFSYDFHLRLVHQHVL
Sbjct: 2101 GCYFCVKQFALECSRIPMGQAVNSQLSMLFTEECDKVRDLMHVHSFSYDFHLRLVHQHVL 2160

Query: 2161 GAHLVLRHGYHLTTFLRHFLAHHPDGPHFGRNHIYQGTLELPTPLIAAHQLYNYVADHAS 2220
            GAHLVLRHGYHLTTFLRHFLAHHPDGPHFGRNHIYQGTLELPTPLIAAHQLYNYVADHAS
Sbjct: 2161 GAHLVLRHGYHLTTFLRHFLAHHPDGPHFGRNHIYQGTLELPTPLIAAHQLYNYVADHAS 2220

Query: 2221 SYHMKPLRMARPGGPEHNEYALVSAWHSSGSYLDSEGLRHQDDFDVSLLVCHCAAPFEEQ 2280
            SYHMKPLRMARPGGPEHNEYALVSAWHSSGSYLDSEGLRHQDDFDVSLLVCHCAAPFEEQ
Sbjct: 2221 SYHMKPLRMARPGGPEHNEYALVSAWHSSGSYLDSEGLRHQDDFDVSLLVCHCAAPFEEQ 2280

Query: 2281 GEAERHVLRLQFFVVLTSQRELFPRLTADMRRFRKPPRLPPEPEAPGSSAGSPGEASGLI 2340
            GEAERHVLRLQFFVVLTSQRELFPRLTADMRRFRKPPRLPPEPEAPGSSAGSPGEASGLI
Sbjct: 2281 GEAERHVLRLQFFVVLTSQRELFPRLTADMRRFRKPPRLPPEPEAPGSSAGSPGEASGLI 2340

Query: 2341 LAPGPAPLFPPLAAEVGMARARLAQLVRLAGGHCRRDTLWKRLFLLEPPGPDRLRLGGRL 2400
            LAPGPAPLFPPLAAEVGMARARLAQLVRLAGGHCRRDTLWKRLFLLEPPGPDRLRLGGRL
Sbjct: 2341 LAPGPAPLFPPLAAEVGMARARLAQLVRLAGGHCRRDTLWKRLFLLEPPGPDRLRLGGRL 2400

Query: 2401 ALAELEELLEAVHAKSIGDIDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSPDLGT 2460
            ALAELEELLEAVHAKSIGDIDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSPDLGT
Sbjct: 2401 ALAELEELLEAVHAKSIGDIDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSPDLGT 2460

Query: 2461 QYLVVLNQKFTDCFVLVFLDSHLGKTSLTVVFREPFPVQPQDSESPPAQLVSTYHHLESV 2520
            QYLVVLNQKFTDCFVLVFLDSHLGKTSLTVVFREPFPVQPQDSESPPAQLVSTYHHLESV
Sbjct: 2461 QYLVVLNQKFTDCFVLVFLDSHLGKTSLTVVFREPFPVQPQDSESPPAQLVSTYHHLESV 2520

Query: 2521 INTACFTLWTRLL 2533
            INTACFTLWTRLL
Sbjct: 2521 INTACFTLWTRLL 2533


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 42/137 (30%), Positives = 51/137 (37%), Gaps = 21/137 (15%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQ 947
            P G  G P +             G  GET  A P  P  P  + G      P  PQG   
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARG------PAGPQG--- 1091

Query: 948  PGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGP------- 1000
            P   +G +    QG  D    G+ G S      GP  + GE+ P     P GP       
Sbjct: 1092 PRGDKGET--GEQG--DRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSA 1147

Query: 1001 -APPQPSLSGLPGPCLP 1016
             AP +  L+GLPGP  P
Sbjct: 1148 GAPGKDGLNGLPGPIGP 1164



 Score = 41.2 bits (95), Expect = 0.013
 Identities = 39/134 (29%), Positives = 49/134 (36%), Gaps = 31/134 (23%)

Query: 890  GSHGEPSSAAWAWHSHEDRAEGIEG-ETLTASPQAPGSPEDSEGVPLISLPRVPQG-GSQ 947
            G  G P  A  A  +    A+G  G +    +P   G+P    G P    P  PQG G  
Sbjct: 371  GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP----GFPGARGPSGPQGPGGP 426

Query: 948  PGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPP---- 1003
            PGP                  G  G      S+G     GE  P  ++ PPGPA      
Sbjct: 427  PGPK-----------------GNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKR 469

Query: 1004 ----QPSLSGLPGP 1013
                +P  +GLPGP
Sbjct: 470  GARGEPGPTGLPGP 483



 Score = 40.0 bits (92), Expect = 0.029
 Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 910  EGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPGPSRGLSLMSSQGSVDSDHLG 969
            EG +G+T    P+ P  P   +G+P    P +P     PGP     L  +     S   G
Sbjct: 111  EGPKGDTGPRGPRGPAGPPGRDGIP--GQPGLPGPPGPPGPPGPPGLGGNFAPQLS--YG 166

Query: 970  YDGGSSGSDS-EGPNDTLGEKAPFTLRTPPGPAPPQPSLSGLPG 1012
            YD  S+G  S  GP   +G   P  L  PPG   PQ    G PG
Sbjct: 167  YDEKSTGGISVPGP---MGPSGPRGLPGPPGAPGPQ-GFQGPPG 206



 Score = 38.1 bits (87), Expect = 0.11
 Identities = 41/135 (30%), Positives = 47/135 (34%), Gaps = 20/135 (14%)

Query: 883  AAGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVP 942
            A  Q P G  GE           E    GI+G    +  Q P  P  S G       + P
Sbjct: 1087 AGPQGPRGDKGETG---------EQGDRGIKGHRGFSGLQGPPGPPGSPG------EQGP 1131

Query: 943  QGGSQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPG-PA 1001
             G S P   RG     S G+   D L    G  G    GP    G+  P     PPG P 
Sbjct: 1132 SGASGPAGPRGPP--GSAGAPGKDGLNGLPGPIGPP--GPRGRTGDAGPVGPPGPPGPPG 1187

Query: 1002 PPQPSLSGLPGPCLP 1016
            PP P  +G     LP
Sbjct: 1188 PPGPPSAGFDFSFLP 1202



 Score = 37.0 bits (84), Expect = 0.25
 Identities = 41/136 (30%), Positives = 52/136 (38%), Gaps = 24/136 (17%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTAS------PQAPGSPEDSEGVPLISLPRV 941
            P G+ G P     A    ++  +G  GET  A       P  P  P   +G P    P  
Sbjct: 888  PSGNAGPPGPPGPAG---KEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG 944

Query: 942  PQGGSQPGPS-----RGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRT 996
              G   PGP      RG+  +  Q   +    G  G S     +GP+   GE      R 
Sbjct: 945  APG--TPGPQGIAGQRGVVGLPGQRG-ERGFPGLPGPSGEPGKQGPSGASGE------RG 995

Query: 997  PPGPAPPQPSLSGLPG 1012
            PPGP  P P L+G PG
Sbjct: 996  PPGPMGP-PGLAGPPG 1010



 Score = 35.4 bits (80), Expect = 0.72
 Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 24/148 (16%)

Query: 888  PGGSHGEPSSAA---WAWHSHEDRAEGIEGETLTASPQA-PGSPEDSEGVPLISLPR-VP 942
            P G+ G P +A       H      +G +G+   A P+  PGSP ++ G P    PR +P
Sbjct: 249  PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN-GAPGQMGPRGLP 307

Query: 943  QGGSQPGPSRGLSLMSSQGSVDS----------DHLGYDGGSSGSDSEGPNDTLGEKAPF 992
                +PG         + G+  +             G+ G        GP    G + P 
Sbjct: 308  GERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQ 367

Query: 993  TLRTPPGPAPP--------QPSLSGLPG 1012
             +R  PGP  P         P   G PG
Sbjct: 368  GVRGEPGPPGPAGAAGPAGNPGADGQPG 395



 Score = 35.4 bits (80), Expect = 0.72
 Identities = 41/150 (27%), Positives = 53/150 (35%), Gaps = 30/150 (20%)

Query: 884  AGQQPG--GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSP---EDSEGVPLISL 938
            A  QPG  G++G P  A          A G  G    + PQ PG P   + + G P    
Sbjct: 390  ADGQPGAKGANGAPGIAG---------APGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG 440

Query: 939  PRVPQGGS----------QPGPSRGLSLMSSQGSVDSDHL----GYDGGSSGSDSEGPND 984
             +   G             PGP+       ++G      L    G  GG       G + 
Sbjct: 441  SKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADG 500

Query: 985  TLGEKAPFTLRTPPGPAPPQ--PSLSGLPG 1012
              G K P   R  PGPA P+  P  +G PG
Sbjct: 501  VAGPKGPAGERGSPGPAGPKGSPGEAGRPG 530



 Score = 35.4 bits (80), Expect = 0.72
 Identities = 36/145 (24%), Positives = 48/145 (33%), Gaps = 25/145 (17%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQ---APGSPEDSEGVP---------- 934
            P G  G P  A     +    A+G+ G   +  P     P  P   +G P          
Sbjct: 516  PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARG 575

Query: 935  ---LISLPRVPQGGSQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAP 991
               ++  P       +PG +    +    G+V     G DG +      GP    GE   
Sbjct: 576  QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGP--AGKDGEAGAQGPPGPAGPAGE--- 630

Query: 992  FTLRTPPGPAPPQPSLSGLPGPCLP 1016
               R   GPA   P   GLPGP  P
Sbjct: 631  ---RGEQGPA-GSPGFQGLPGPAGP 651


>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
          Length = 717

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 514  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 573

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 574  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 630

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 631  GPIGVPGPAGP 641


>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
          Length = 655

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 452  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 511

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 512  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 568

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 569  GPIGVPGPAGP 579



 Score = 37.0 bits (84), Expect = 0.25
 Identities = 40/141 (28%), Positives = 50/141 (35%), Gaps = 31/141 (21%)

Query: 900  WAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG-------------- 945
            W  HS   R            P   GSP D+ G+ +I  PR P G               
Sbjct: 100  WKLHSRRRREAPKTSPGCNCPPAPQGSPGDA-GLSIIG-PRGPPGQPGTRGFPGFPGPIG 157

Query: 946  -----SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPG- 999
                   PGP   + L    G           G  G   E P+   GE++  +++ PPG 
Sbjct: 158  LDGKPGHPGPKGDMGLTGPPGQPGPQG---QKGEKGQCGEYPHR--GEQSQASIQGPPGP 212

Query: 1000 PAPPQPS----LSGLPGPCLP 1016
            P PP PS      GLPGP  P
Sbjct: 213  PGPPGPSGPLGHPGLPGPMGP 233


>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
          Length = 657

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 454  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 513

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 514  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 570

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 571  GPIGVPGPAGP 581


>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
          Length = 660

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 457  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 516

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 517  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 573

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 574  GPIGVPGPAGP 584


>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
          Length = 664

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 461  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 520

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 521  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 577

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 578  GPIGVPGPAGP 588



 Score = 37.4 bits (85), Expect = 0.19
 Identities = 38/123 (30%), Positives = 48/123 (39%), Gaps = 31/123 (25%)

Query: 918  TASPQAPGSPEDSEGVPLISLPRVPQGG-------------------SQPGPSRGLSLMS 958
            T  P  PGSP D+ G+ +I  PR P G                      PGP   + L  
Sbjct: 127  TGRPGLPGSPGDA-GLSIIG-PRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTG 184

Query: 959  SQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPG-PAPPQPS----LSGLPGP 1013
              G           G  G   E P+   GE++  +++ PPG P PP PS      GLPGP
Sbjct: 185  PPGQPGPQG---QKGEKGQCGEYPHR--GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGP 239

Query: 1014 CLP 1016
              P
Sbjct: 240  MGP 242


>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
          Length = 676

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 473  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 532

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 533  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 589

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 590  GPIGVPGPAGP 600



 Score = 34.7 bits (78), Expect = 1.2
 Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 12/139 (8%)

Query: 884  AGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQ 943
            A Q P G  G P             + G  G ++      PG P  + G P    P    
Sbjct: 122  AFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQP-GTRGFPGFPGPIGLD 180

Query: 944  GG-SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPG-PA 1001
            G    PGP   + L    G           G  G   E P+   GE++  +++ PPG P 
Sbjct: 181  GKPGHPGPKGDMGLTGPPGQPGPQG---QKGEKGQCGEYPHR--GEQSQASIQGPPGPPG 235

Query: 1002 PPQPS----LSGLPGPCLP 1016
            PP PS      GLPGP  P
Sbjct: 236  PPGPSGPLGHPGLPGPMGP 254


>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
          Length = 688

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 485  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 544

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 545  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 601

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 602  GPIGVPGPAGP 612


>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
          Length = 695

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 492  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 551

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 552  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 608

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 609  GPIGVPGPAGP 619


>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
          Length = 698

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 495  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 554

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 555  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 611

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 612  GPIGVPGPAGP 622


>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
          Length = 700

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 497  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 556

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 557  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 613

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 614  GPIGVPGPAGP 624


>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
          Length = 705

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 502  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 561

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 562  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 618

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 619  GPIGVPGPAGP 629


>gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]
          Length = 717

 Score = 42.0 bits (97), Expect = 0.008
 Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 514  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 573

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G    D  G  G       +G    LG      L   PGP P  P
Sbjct: 574  GPPGPPGLQGVPGPKGEAGLD--GAKGEKGFQGEKGDRGPLGLPGASGLDGRPGP-PGTP 630

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 631  GPIGVPGPAGP 641


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 41.6 bits (96), Expect = 0.010
 Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 36/162 (22%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEG-------------ETLTASP--QAPGSPEDSEG 932
            P G  GEP          E  A+G  G             + LT  P  + P  P    G
Sbjct: 717  PRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPG 776

Query: 933  VPLISLPRVPQG--------GSQPGPSRGLSLMSSQGSV---------DSDHLGYDGGSS 975
             P ++ P+ PQG        G +  P     +++S+GS              +G  G   
Sbjct: 777  KPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPG 836

Query: 976  GSDSEGPNDTLGEKAPFTLRTPPGP----APPQPSLSGLPGP 1013
                 GP    G +    L+ PPGP     PP PS+ G PGP
Sbjct: 837  APGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGP 878



 Score = 41.2 bits (95), Expect = 0.013
 Identities = 43/159 (27%), Positives = 60/159 (37%), Gaps = 35/159 (22%)

Query: 890  GSHGEPSSAAWAWHSHEDRAEGIEGET-LTASP--QAPGSPEDSEGVPLISLPRVPQG-- 944
            G+ GEP +      +  D  +G  GE  LT  P  + P  P    G P ++ P+ PQG  
Sbjct: 731  GAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLP 790

Query: 945  ------GSQPGPSRGLSLMSSQGSV---------DSDHLGYDGGSSGSDSEGPNDTLGEK 989
                  G +  P     +++S+GS              +G  G        GP    G +
Sbjct: 791  GTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQ 850

Query: 990  APFTLRTPPGP----APPQPSL-----------SGLPGP 1013
                L+ PPGP     PP PS+            GLPGP
Sbjct: 851  EVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGP 889



 Score = 39.3 bits (90), Expect = 0.050
 Identities = 35/130 (26%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGET-LTASPQAPGSPEDSEGVPLISLPRVPQGGS 946
            P G  G+P               G  G   +   P APG    SEG  ++++P  P    
Sbjct: 768  PPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPG 827

Query: 947  QPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPF--TLRTPPGP-APP 1003
              GP          G       G  G     + +GP    G + P   ++  PPGP  PP
Sbjct: 828  AMGPPGPPGAPGPAGPA-----GLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPP 882

Query: 1004 QPSLSGLPGP 1013
               L G PGP
Sbjct: 883  GEGLPGPPGP 892



 Score = 37.0 bits (84), Expect = 0.25
 Identities = 41/136 (30%), Positives = 47/136 (34%), Gaps = 24/136 (17%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQ 947
            P G  G P S             G +GE   A    P  P    GVP    P+   G   
Sbjct: 631  PRGEAGPPGS-------------GEKGERGAAGEPGPHGPP---GVPGSVGPKGSSGSPG 674

Query: 948  P-GPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPG-----PA 1001
            P GP   + L   +G V    +  D G  G    GP    GEK P  L   PG      A
Sbjct: 675  PQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPP--GPKGDQGEKGPRGLTGEPGMRGLPGA 732

Query: 1002 PPQPSLSGLPGPCLPD 1017
              +P   G  GP  PD
Sbjct: 733  VGEPGAKGAMGPAGPD 748


>gi|22748805 hypothetical protein LOC127703 [Homo sapiens]
          Length = 229

 Score = 40.8 bits (94), Expect = 0.017
 Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 37/143 (25%)

Query: 875  PDSGFFFVAAGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASP------QAPGSPE 928
            PDS   F+A+ +    +          WH    R E I   + + SP      QAPGSPE
Sbjct: 29   PDSNSNFMASAKDANEN----------WHGMPGRVEPILRRSSSESPSDNQAFQAPGSPE 78

Query: 929  DSEGVPLISLPRVPQGGSQPGPSRGLSLMSSQGSVDS--DHLGYDGGSSGSDSEG--PND 984
            +    P       P+G   PG       M   G+V S  +  GY   S   DS    P  
Sbjct: 79   EGVRSP-------PEGAEIPGAEP--EKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEP 129

Query: 985  TLGEKAPFTLRTPPGPAPPQPSL 1007
              G        TP GP PP P L
Sbjct: 130  ACG--------TPRGPGPPDPLL 144


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 40.4 bits (93), Expect = 0.022
 Identities = 37/139 (26%), Positives = 44/139 (31%), Gaps = 8/139 (5%)

Query: 878  GFFFVAAGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLIS 937
            G F     + P G  G P              +G  G+     P  P  P    G P   
Sbjct: 1207 GLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGAD 1266

Query: 938  LPRVPQGG-SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRT 996
             P+ P GG   PG    +      G      L  +GG  G   +G     GE  P     
Sbjct: 1267 GPQGPPGGIGNPG---AVGEKGEPGEAGEPGLPGEGGPPG--PKGERGEKGESGPSGAAG 1321

Query: 997  PPGP--APPQPSLSGLPGP 1013
            PPGP   P      G PGP
Sbjct: 1322 PPGPKGPPGDDGPKGSPGP 1340



 Score = 38.9 bits (89), Expect = 0.065
 Identities = 35/124 (28%), Positives = 44/124 (35%), Gaps = 14/124 (11%)

Query: 887  QPG--GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVP----LISLPR 940
            +PG  G  G P          E   +G  G +  A P  P  P   +G       +  P 
Sbjct: 1286 EPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPG 1345

Query: 941  VPQGGSQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGP 1000
             P    +PGP+        Q     D  G DG    + S GP    G   P   R PPGP
Sbjct: 1346 DPGPPGEPGPA-------GQDGPPGDK-GDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGP 1397

Query: 1001 APPQ 1004
            A P+
Sbjct: 1398 AGPE 1401



 Score = 38.1 bits (87), Expect = 0.11
 Identities = 47/162 (29%), Positives = 54/162 (33%), Gaps = 47/162 (29%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQG--G 945
            P GS GE   A          A G  G      PQ P  P   +G P    P+ P G  G
Sbjct: 1085 PAGSPGERGPAG---------AAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG 1135

Query: 946  SQ-----PGPSRGLSLMSSQGSVDSDHLGYDG--GSSGSDSE-------GPNDTLGEKAP 991
             Q     PGP+  +      G  D   +G  G  GS G   E       GP   +G+  P
Sbjct: 1136 LQGPVGLPGPAGPVGPPGEDG--DKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGP 1193

Query: 992  FTLRTPPG-------------------PAPPQP-SLSGLPGP 1013
                  PG                   P PP P  L GLPGP
Sbjct: 1194 SGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGP 1235



 Score = 37.0 bits (84), Expect = 0.25
 Identities = 38/134 (28%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQ 947
            P G  G+P        + +D   G +G+     P   GSP  + G P  S P   +G   
Sbjct: 1340 PVGFPGDPGPPGEPGPAGQDGPPGDKGDD--GEPGQTGSPGPT-GEPGPSGPPGKRG--P 1394

Query: 948  PGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPA-----P 1002
            PGP+        +G+      G +G    +   GP    G+  P  LR  PGP      P
Sbjct: 1395 PGPAGPEGRQGEKGA--KGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLP 1452

Query: 1003 PQPSLSGLPGPCLP 1016
              P   G PGP  P
Sbjct: 1453 GSPGPDGPPGPMGP 1466



 Score = 35.4 bits (80), Expect = 0.72
 Identities = 42/135 (31%), Positives = 47/135 (34%), Gaps = 31/135 (22%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVP-LISLPRVPQG 944
            Q P G  G+P     A     D A G+ G+T          P+   G   L  LP     
Sbjct: 597  QGPPGPAGKPGRRGRAG---SDGARGMPGQT---------GPKGDRGFDGLAGLPGEKGH 644

Query: 945  GSQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSE-GPNDTLGEKAPFTLRTPPG-PAP 1002
               PGPS         G    D      G  G D E GP    GE  P  L  P G P P
Sbjct: 645  RGDPGPS------GPPGPPGDD------GERGDDGEVGPRGLPGEPGPRGLLGPKGPPGP 692

Query: 1003 PQP----SLSGLPGP 1013
            P P     + G PGP
Sbjct: 693  PGPPGVTGMDGQPGP 707



 Score = 35.4 bits (80), Expect = 0.72
 Identities = 43/160 (26%), Positives = 55/160 (34%), Gaps = 14/160 (8%)

Query: 866  LPGHVLLEDPDSGFFFV----AAGQQPG-GSHGEPSSAAWAWHSHEDRAEGIEGETLTAS 920
            LPG+   + P     F     A G++ G G+ G+P        +      G  G T    
Sbjct: 872  LPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPG 931

Query: 921  PQAPGSPEDSEGVPLISLPRVPQGGS-------QPGPSRGLSLMSSQGSV-DSDHLGYDG 972
            P+     +   G P    P  PQG +        PGP     L    G   ++   G  G
Sbjct: 932  PKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG 991

Query: 973  GSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQPSLSGLPG 1012
                    GP    GE  P   R  PGP P  P   GLPG
Sbjct: 992  PPGPPGVVGPQGPTGETGPMGERGHPGP-PGPPGEQGLPG 1030



 Score = 35.4 bits (80), Expect = 0.72
 Identities = 37/131 (28%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGS- 946
            P G+ G+P              +G+ G   +  P  P  P    G+P +     P+G   
Sbjct: 1427 PQGAPGKPGPDGLRGIPGPVGEQGLPG---SPGPDGPPGPMGPPGLPGLKGDSGPKGEKG 1483

Query: 947  QPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSE----GPNDTLGEKAPFTLRTPPGPAP 1002
             PG    +     QG      L    GSSG   E    GP+  +G   P  L  PPGP  
Sbjct: 1484 HPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKG 1543

Query: 1003 PQPSLSGLPGP 1013
             + S SG  GP
Sbjct: 1544 AKGS-SGPTGP 1553


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 40.4 bits (93), Expect = 0.022
 Identities = 45/145 (31%), Positives = 50/145 (34%), Gaps = 18/145 (12%)

Query: 878  GFFFVAAGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQ----APGSPEDSEGV 933
            G    AAG Q  G  G P          +D  +G  G      P     APG P      
Sbjct: 17   GELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEA 76

Query: 934  PLISLPRVPQGGSQPGPSRGLSLMSSQGSVDSDHLGYDG--GSSGSDSEGPNDTLGEKAP 991
             L  LP V     + GP         +GS     LG  G  G  G    GP    G   P
Sbjct: 77   GLPGLPGVDGLTGRDGPPGPKGAPGERGS-----LGPPGPPGLGGKGLPGPPGEAGVSGP 131

Query: 992  ---FTLRTPPGPAPPQPSLSGLPGP 1013
                 LR PPGP+     L GLPGP
Sbjct: 132  PGGIGLRGPPGPS----GLPGLPGP 152



 Score = 35.4 bits (80), Expect = 0.72
 Identities = 44/146 (30%), Positives = 53/146 (36%), Gaps = 24/146 (16%)

Query: 890  GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAP-GSP--------EDSEGVPLISLPR 940
            G  GEP     A    E    G  G      PQ P G+P        + S G P +  P+
Sbjct: 361  GPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQ 420

Query: 941  VPQG-------GSQPGPSRGLSLMSSQGSV-DSDHLGYDG-----GSSGSDSE-GPNDTL 986
              +G       G   GP     +  S G   D   LG  G     G SGS  E GP  T 
Sbjct: 421  GLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQ 480

Query: 987  GEKAPFTLRTPPGPAPPQPSLSGLPG 1012
            G      ++  PGP  P   L G+PG
Sbjct: 481  GPNGTSGVQGVPGPPGPL-GLQGVPG 505


>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
          Length = 3664

 Score = 40.0 bits (92), Expect = 0.029
 Identities = 76/327 (23%), Positives = 121/327 (37%), Gaps = 42/327 (12%)

Query: 453  GLPHAPPSPGPLSPGPFSSSMEEGAEPRERAILASESSIETEDL------SEPEFQSTRV 506
            G P   P+P P  PG   + ++  A  +  A+  SE  +ET++       +E   +S+R 
Sbjct: 2228 GEPENFPAPPPY-PGESQTDLQPPAGAQ--ALQPSEEGMETDEAVSGILETEAATESSRP 2284

Query: 507  PGIPDPGPEISLTDVCQLRGEAHGALHSVIQEK-FLEISRLHFRTVPSNPHYFFYCPPSS 565
            P +  P P    TD  + RG +    HSV + K   E+     R               S
Sbjct: 2285 P-VNAPDPSAGPTDTKEARGNSSETSHSVPEAKGSKEVEVTLVRKDKGRQK-----TTRS 2338

Query: 566  RREDEGPRDTVDRKISDLEFSEAELMGEEGDTSACCV-VTESDPELEVEYRESRESDLGP 624
            RR+    R+T  + ++ +E    E    +G++ A     T   PE   E ++S +    P
Sbjct: 2339 RRK----RNTNKKVVAPVESHVPESNQAQGESPAANEGTTVQHPEAPQEEKQSEKPHSTP 2394

Query: 625  AGLDSASLSDVDTVNPDEDSFSILGGDSPTGPESFLHDLPPLFLHLTCSVRLRGQHSSVP 684
                ++ LS + +        S+    +PT   S   DLPP                  P
Sbjct: 2395 PQSCTSDLSKIPSTENSSQEISV-EERTPT-KASVPPDLPP-------------PPQPAP 2439

Query: 685  VCSLPTCLGQVLSSLEGPPVGGRVPLRDLSVTLDVFMLTLPLEVELPTASDPQHHRSTSE 744
            V   P    +V S +E  PV    P  D S+ +         ++  P AS    H+S   
Sbjct: 2440 VDEEPQARFRVHSIIESDPV---TPPSDPSIPIPTLPSVTAAKLSPPVASGGIPHQSPPT 2496

Query: 745  SSASFPRSPGQPSSLRSDDGLGPPLPP 771
                +     +P   R+     P LPP
Sbjct: 2497 KVTEWITRQEEP---RAQSTPSPALPP 2520


>gi|122937271 WAS protein homolog associated with actin, golgi
            membranes and microtubules [Homo sapiens]
          Length = 809

 Score = 40.0 bits (92), Expect = 0.029
 Identities = 32/82 (39%), Positives = 38/82 (46%), Gaps = 13/82 (15%)

Query: 2282 EAERHVLRLQFFVVLTSQRELFPRL----TADMRRFRKPPRLPPEPEAPGSSAGSPGEAS 2337
            E ERH  RL+F V        F       TA  RR R+  RL PEPE    +A SP   +
Sbjct: 22   EPERH--RLRFLVAWNGAEGKFAVTCHDRTAQQRRLREGARLGPEPEPKPEAAVSPSSWA 79

Query: 2338 GLILAPG-------PAPLFPPL 2352
            GL+ A G        A L+PPL
Sbjct: 80   GLLSAAGLRGAHRQLAALWPPL 101


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 40.0 bits (92), Expect = 0.029
 Identities = 41/145 (28%), Positives = 51/145 (35%), Gaps = 34/145 (23%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGET----------------LTASPQAPGSPEDSE 931
            P G+ G P          ED A+G  G T                +  SP   G P D  
Sbjct: 1236 PSGAAGPPGKKG---PPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVG 1292

Query: 932  GVPLISLPRVPQGGSQPGPSRGLSLMSSQGSVDSDHLGYDG--GSSGSDSE-GPNDTLGE 988
            G      P  P    +PG           G     H+G +G  G  G+  E GP+   G 
Sbjct: 1293 G------PGPPGASGEPGAPGPPGKRGPSG-----HMGREGREGEKGAKGEPGPDGPPGR 1341

Query: 989  KAPFTLRTPPGPAPPQPSLSGLPGP 1013
              P   R PPG   P+  L G+PGP
Sbjct: 1342 TGPMGARGPPGRVGPE-GLRGIPGP 1365



 Score = 36.6 bits (83), Expect = 0.32
 Identities = 41/139 (29%), Positives = 46/139 (33%), Gaps = 16/139 (11%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQ 947
            P G  G P              EG EG      P  P   E   G  L   P    G   
Sbjct: 930  PLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAG--LRGFPGPKGGPGD 987

Query: 948  PGPSRGLSLMSSQGSVDSDH-------LGYDGG---SSGSDSEGPNDTLGEKAPFTLRTP 997
            PGP+         G V ++        LG  GG      S SEGP    G+K     R P
Sbjct: 988  PGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGP 1047

Query: 998  PGPAPPQPSLSGLPGPCLP 1016
            PGP        G+PGP  P
Sbjct: 1048 PGPT----GKDGIPGPLGP 1062



 Score = 35.0 bits (79), Expect = 0.94
 Identities = 39/137 (28%), Positives = 47/137 (34%), Gaps = 22/137 (16%)

Query: 887  QPG--GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDS-----EGVPLISLP 939
            QPG  G  G P S             G +G+       APG P +      +G P    P
Sbjct: 825  QPGLEGERGPPGSRGERGQPGATGQPGPKGDV--GQDGAPGIPGEKGLPGLQGPPGFPGP 882

Query: 940  RVPQG----GSQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLR 995
            + P G      +PG       +  QG          G    +   GP    GE  P   R
Sbjct: 883  KGPPGHQGKDGRPGHPGQRGELGFQGQT--------GPPGPAGVLGPQGKTGEVGPLGER 934

Query: 996  TPPGPAPPQPSLSGLPG 1012
             PPGP P  P   GLPG
Sbjct: 935  GPPGP-PGPPGEQGLPG 950



 Score = 34.7 bits (78), Expect = 1.2
 Identities = 33/127 (25%), Positives = 42/127 (33%), Gaps = 15/127 (11%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQ 947
            P G  G         H  +    G +G+T    P     P+   G       R P G   
Sbjct: 882  PKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPG 941

Query: 948  PGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGP--APPQP 1005
            P   +GL              G +G        GP   LG++ P  LR  PGP   P  P
Sbjct: 942  PPGEQGLP-------------GLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDP 988

Query: 1006 SLSGLPG 1012
              +GL G
Sbjct: 989  GPTGLKG 995



 Score = 34.3 bits (77), Expect = 1.6
 Identities = 40/157 (25%), Positives = 53/157 (33%), Gaps = 38/157 (24%)

Query: 866  LPGHVLLEDPDSGFFFVAAGQQPG----GSHGEPSSAAWAWHSHEDRAEGIEGETLTASP 921
            LPGH  L+  +      A G Q      G HG P           D A G+ G+T     
Sbjct: 495  LPGHPGLKGEEG-----AEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDT----- 544

Query: 922  QAPGSPEDSEGVPLISLPRVPQGG----SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGS 977
              P      +G+P +   +  +G      QPGP                  G DG     
Sbjct: 545  -GPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPP-----------------GEDGERGAE 586

Query: 978  DSEGPNDTLGEKAPFTLRTPPGPAPP--QPSLSGLPG 1012
               GP    GE  P  L  P G   P  +P ++G+ G
Sbjct: 587  GPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDG 623



 Score = 32.7 bits (73), Expect = 4.7
 Identities = 37/154 (24%), Positives = 49/154 (31%), Gaps = 23/154 (14%)

Query: 882  VAAGQQPG--GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLP 939
            V A   PG  G  G          S  +   G  G+  +   + P  P   +G+P    P
Sbjct: 1003 VGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGP 1062

Query: 940  RVPQGGSQPGPSRG----LSLMSSQGSV----------------DSDHLGYDGGSSGSDS 979
              P G + P    G    +     +GS                  + H G  G       
Sbjct: 1063 LGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGR 1122

Query: 980  EGPNDTLGEKAPFTLRTPPGPAPPQPSLSGLPGP 1013
             GP    G+K    +R   G   P P L GLPGP
Sbjct: 1123 RGPPGLFGQKGDDGVRGFVGVIGP-PGLQGLPGP 1155


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 40.0 bits (92), Expect = 0.029
 Identities = 72/276 (26%), Positives = 96/276 (34%), Gaps = 46/276 (16%)

Query: 767  PPLPPPEEERHPGLSNLATPHRLAIETTMNEIRWLLEDEMVG--ALRRGGIP-----QSP 819
            PPLPPP E +   L     P R   E          +    G  AL   G P     + P
Sbjct: 1177 PPLPPPPEAQPRRLE--PAPPRARPEVAPEGEPGAPDSRAGGDTALSGDGDPPKPERKGP 1234

Query: 820  ALHRAAAHIHSSPGRSTCLRQTLPLSFVFGPERSLTQFKEEFRRLHLPGHVLLEDPDSGF 879
             + R    +    G S  ++  L    +  P  +LT F         PG      P  G 
Sbjct: 1235 EMPRLFLDLGPPQGNSEQIKARLSRLSLALPPLTLTPF---------PGPGPRRPPWEGA 1285

Query: 880  FFVAAGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGET--LTASPQAPG-----------S 926
               AAG + GG+     +        ED  E  E       A P+ PG           S
Sbjct: 1286 DAGAAGGEAGGAGAPGPAEEDGEDEDEDEEEDEEAAAPGAAAGPRGPGRARAAPVPVVVS 1345

Query: 927  PEDSEGV-PLISLPRVPQGGSQPGPS---RGLSLMSSQGSVDSDHLGYDGGSSGSDSEGP 982
              D++   PL  L + P+G  +P  S   R   ++S  G V + +L         D E P
Sbjct: 1346 SADADAARPLRGLLKSPRGADEPEDSELERKRKMVSFHGDV-TVYL--------FDQETP 1396

Query: 983  NDTLGEKAPFTLRTPPG--PAPPQPSLSGLPGPCLP 1016
             + L  +AP    T P   PAPP P     PG   P
Sbjct: 1397 TNELSVQAPPEGDTDPSTPPAPPTPPHPATPGDGFP 1432



 Score = 34.3 bits (77), Expect = 1.6
 Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 12/117 (10%)

Query: 1979 HRPESGSGSREAPTSCESLDVSPPGAREEPWLKELSLAFLQQYVQYLQSIGFVLVPLRPP 2038
            H PE  S  R    S   L ++PP +    +L  L  A   QY       G    P  PP
Sbjct: 731  HPPEDDSSLRAERGSLADLPMAPPASAPPEFLDPLMGAAAPQY----PGRGPPPAPPPPP 786

Query: 2039 SPARSTSRPRAM----AILGTEGRGSFSCPKTKTDGSPKSTSSPVTTYHLQRALPGG 2091
             P R+ + P A     + + + G G  S P  K   S   T +P   +  + A PGG
Sbjct: 787  PPPRAPADPAASPDPPSAVASPGSG-LSSPGPKPGDSGYETETP---FSPEGAFPGG 839


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 39.7 bits (91), Expect = 0.038
 Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 18/132 (13%)

Query: 890  GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPG 949
            G+ G P S   A  + +   +G  GE     P  P  P  + G+     PR  +G +   
Sbjct: 1068 GAPGPPGSPGPAGPTGK---QGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP 1124

Query: 950  PSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPN---DTLGEKAPFTLRTPPGPAPP--Q 1004
              RGL            H G+ G        GP+      G   P   R PPGP  P  +
Sbjct: 1125 GERGL----------KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGK 1174

Query: 1005 PSLSGLPGPCLP 1016
               +G+PGP  P
Sbjct: 1175 DGANGIPGPIGP 1186



 Score = 36.2 bits (82), Expect = 0.42
 Identities = 43/147 (29%), Positives = 54/147 (36%), Gaps = 22/147 (14%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGI---EGETLTASPQAPGSP---EDSEGVP------- 934
            P G++GEP  A            G+   +GET  A P  P  P      +G P       
Sbjct: 607  PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQG 666

Query: 935  LISLPRVPQGGSQPGPSRGLSLMSSQGSV-DSDHLGYDG--GSSGSDS-EGPN---DTLG 987
            L   P  P  G +PG         + G V      G+ G  GS G+   +GP     T G
Sbjct: 667  LPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 726

Query: 988  EKAPFTLRTPPGPAPPQ--PSLSGLPG 1012
               P     P GP   Q  P L G+PG
Sbjct: 727  TDGPKGASGPAGPPGAQGPPGLQGMPG 753



 Score = 35.8 bits (81), Expect = 0.55
 Identities = 32/129 (24%), Positives = 44/129 (34%), Gaps = 8/129 (6%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQ 947
            P G  G P +        E    G +G+     PQ P      +G   ++ P+  +G   
Sbjct: 832  PAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ- 890

Query: 948  PGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQPSL 1007
             GP        + G V     G  G +      GP    G+  P   R   GP P +   
Sbjct: 891  -GPPGATGFPGAAGRV-----GPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP-PGRAGE 943

Query: 1008 SGLPGPCLP 1016
             GL GP  P
Sbjct: 944  PGLQGPAGP 952



 Score = 35.0 bits (79), Expect = 0.94
 Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 877  SGFFFVAAGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGET----LTASP--QAPGSPEDS 930
            +GF   A    P GS+G P        S +D  +G  G++        P  Q P  P   
Sbjct: 896  TGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGE 955

Query: 931  EGVPLISLPRVPQGGSQPGP-----SRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDT 985
            +G P    P   +G   PGP      RG+  +  Q   +    G  G S     +G    
Sbjct: 956  KGEPGDDGPSGAEG--PPGPQGLAGQRGIVGLPGQRG-ERGFPGLPGPSGEPGKQGAPGA 1012

Query: 986  LGEKAPFTLRTPPGPAPP--QPSLSGLPG 1012
             G++ P     PPG   P  +P   G PG
Sbjct: 1013 SGDRGPPGPVGPPGLTGPAGEPGREGSPG 1041


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
            sapiens]
          Length = 1418

 Score = 39.7 bits (91), Expect = 0.038
 Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 18/132 (13%)

Query: 890  GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPG 949
            G+ G P S   A  + +   +G  GE     P  P  P  + G+     PR  +G +   
Sbjct: 999  GAPGPPGSPGPAGPTGK---QGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP 1055

Query: 950  PSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPN---DTLGEKAPFTLRTPPGPAPP--Q 1004
              RGL            H G+ G        GP+      G   P   R PPGP  P  +
Sbjct: 1056 GERGL----------KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGK 1105

Query: 1005 PSLSGLPGPCLP 1016
               +G+PGP  P
Sbjct: 1106 DGANGIPGPIGP 1117



 Score = 36.2 bits (82), Expect = 0.42
 Identities = 43/147 (29%), Positives = 54/147 (36%), Gaps = 22/147 (14%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGI---EGETLTASPQAPGSP---EDSEGVP------- 934
            P G++GEP  A            G+   +GET  A P  P  P      +G P       
Sbjct: 538  PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQG 597

Query: 935  LISLPRVPQGGSQPGPSRGLSLMSSQGSV-DSDHLGYDG--GSSGSDS-EGPN---DTLG 987
            L   P  P  G +PG         + G V      G+ G  GS G+   +GP     T G
Sbjct: 598  LPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 657

Query: 988  EKAPFTLRTPPGPAPPQ--PSLSGLPG 1012
               P     P GP   Q  P L G+PG
Sbjct: 658  TDGPKGASGPAGPPGAQGPPGLQGMPG 684



 Score = 35.8 bits (81), Expect = 0.55
 Identities = 32/129 (24%), Positives = 44/129 (34%), Gaps = 8/129 (6%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQ 947
            P G  G P +        E    G +G+     PQ P      +G   ++ P+  +G   
Sbjct: 763  PAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ- 821

Query: 948  PGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQPSL 1007
             GP        + G V     G  G +      GP    G+  P   R   GP P +   
Sbjct: 822  -GPPGATGFPGAAGRV-----GPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP-PGRAGE 874

Query: 1008 SGLPGPCLP 1016
             GL GP  P
Sbjct: 875  PGLQGPAGP 883



 Score = 35.0 bits (79), Expect = 0.94
 Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 877  SGFFFVAAGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGET----LTASP--QAPGSPEDS 930
            +GF   A    P GS+G P        S +D  +G  G++        P  Q P  P   
Sbjct: 827  TGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGE 886

Query: 931  EGVPLISLPRVPQGGSQPGP-----SRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDT 985
            +G P    P   +G   PGP      RG+  +  Q   +    G  G S     +G    
Sbjct: 887  KGEPGDDGPSGAEG--PPGPQGLAGQRGIVGLPGQRG-ERGFPGLPGPSGEPGKQGAPGA 943

Query: 986  LGEKAPFTLRTPPGPAPP--QPSLSGLPG 1012
             G++ P     PPG   P  +P   G PG
Sbjct: 944  SGDRGPPGPVGPPGLTGPAGEPGREGSPG 972


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 39.7 bits (91), Expect = 0.038
 Identities = 42/129 (32%), Positives = 48/129 (37%), Gaps = 23/129 (17%)

Query: 890  GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQG-GSQP 948
            G  GEP  A     S      G +GE  +A PQ P  P   EG       R P G     
Sbjct: 343  GLVGEPGPAGSKGES------GNKGEPGSAGPQGPPGPSGEEG------KRGPNGEAGSA 390

Query: 949  GPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPA--PPQPS 1006
            GP     L  S GS      G  G    +   GP  + G   P  +R P G A  P +P 
Sbjct: 391  GPPGPPGLRGSPGS-----RGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPG 445

Query: 1007 L---SGLPG 1012
            L    GLPG
Sbjct: 446  LMGPRGLPG 454



 Score = 36.6 bits (83), Expect = 0.32
 Identities = 31/109 (28%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 909  AEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPGPSRGLSLMSSQGSVDSDHL 968
            A G  GE   A P  P  P  S G      P  P G + P  + G      Q     +  
Sbjct: 689  ATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAG------QPGAKGER- 741

Query: 969  GYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQ-----PSLSGLPG 1012
            G  G    +   GP   +G   P     PPGPA  +     P ++G PG
Sbjct: 742  GAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPG 790



 Score = 34.3 bits (77), Expect = 1.6
 Identities = 35/130 (26%), Positives = 45/130 (34%), Gaps = 16/130 (12%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQ 947
            P G  G P +   A         GI+G      P        + G P    P+ P G   
Sbjct: 449  PRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPG---PKGPTGDPG 505

Query: 948  PGPSRG-LSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQPS 1006
                +G   L  ++G+      G DG +      GP    G K     + PPGP    P 
Sbjct: 506  KNGDKGHAGLAGARGAP-----GPDGNNGAQGPPGPQGVQGGKGE---QGPPGP----PG 553

Query: 1007 LSGLPGPCLP 1016
              GLPGP  P
Sbjct: 554  FQGLPGPSGP 563



 Score = 33.1 bits (74), Expect = 3.6
 Identities = 38/158 (24%), Positives = 54/158 (34%), Gaps = 29/158 (18%)

Query: 878  GFFFVAAGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLI- 936
            G F +     P G  G P          E  A G  G   +  P  P  P+ ++G P + 
Sbjct: 577  GEFGLPGPAGPRGERGPPG---------ESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVV 627

Query: 937  -----SLPRVPQGGSQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSD----------SEG 981
                 + P  P G   PG      +   +G      L  + G+ G D          + G
Sbjct: 628  GAVGTAGPSGPSG--LPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPG 685

Query: 982  PNDTLGEKAPFTLRTPPGPAPPQ--PSLSGLPGPCLPD 1017
            P    G++       P GPA P+  P   G  GP  P+
Sbjct: 686  PAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPN 723



 Score = 33.1 bits (74), Expect = 3.6
 Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 890  GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPG 949
            G  GE  +A  A  +    + G  GE   A P     P  + G P     R        G
Sbjct: 691  GDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGER-----GAKG 745

Query: 950  PSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPA----PPQP 1005
            P     ++   G V     G  G +  +   GP  + G+  P  +   PG A    PP P
Sbjct: 746  PKGENGVVGPTGPV-----GAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGP 800

Query: 1006 S-LSGLPGP 1013
            S +SG PGP
Sbjct: 801  SGISGPPGP 809


>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
          Length = 686

 Score = 39.7 bits (91), Expect = 0.038
 Identities = 34/131 (25%), Positives = 45/131 (34%), Gaps = 15/131 (11%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 495  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 554

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G       G DG       +G     G++ P  L   PGP     
Sbjct: 555  GPPGPPGLQGVPGPKGEA-----GLDGAKGEKGFQGEK---GDRGPLGLPGTPGPI---- 602

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 603  ---GVPGPAGP 610


>gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens]
          Length = 705

 Score = 39.7 bits (91), Expect = 0.038
 Identities = 34/131 (25%), Positives = 45/131 (34%), Gaps = 15/131 (11%)

Query: 886  QQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGG 945
            Q P G  G P       H      +G +GET  A           +G P   +P +P   
Sbjct: 514  QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPE 573

Query: 946  SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQP 1005
              PGP     +   +G       G DG       +G     G++ P  L   PGP     
Sbjct: 574  GPPGPPGLQGVPGPKGEA-----GLDGAKGEKGFQGEK---GDRGPLGLPGTPGPI---- 621

Query: 1006 SLSGLPGPCLP 1016
               G+PGP  P
Sbjct: 622  ---GVPGPAGP 629


>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
          Length = 1388

 Score = 38.9 bits (89), Expect = 0.065
 Identities = 48/189 (25%), Positives = 63/189 (33%), Gaps = 19/189 (10%)

Query: 842  LPLSFVFGPERSLTQFKEEFRRLHLPGHVLLEDPDSGFFFVAAGQQPG------GSHGEP 895
            LPL  V  PER +T  + E   +        E  D+G       +  G      G+  E 
Sbjct: 536  LPLPTV-APERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGPVGPTAGAEAEG 594

Query: 896  SSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVP------LISLPRVPQGGSQPG 949
            S   W         + +  E L   P  P  P    G+P      +   P    G   P 
Sbjct: 595  SGLGWGSDVGSGSGDLVGSEQLLRGPPGPPGPPGLPGIPGKPGTDVFMGPPGSPGEDGPA 654

Query: 950  PSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQ----- 1004
               G      Q  VD    G  G      + GPN ++GEK     R  PGP   +     
Sbjct: 655  GEPGPPGPEGQPGVDGA-TGLPGMKGEKGARGPNGSVGEKGDPGNRGLPGPPGKKGQAGP 713

Query: 1005 PSLSGLPGP 1013
            P + G PGP
Sbjct: 714  PGVMGPPGP 722


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 38.9 bits (89), Expect = 0.065
 Identities = 44/145 (30%), Positives = 51/145 (35%), Gaps = 20/145 (13%)

Query: 876  DSGFFFVAAGQQPGGSHGEPSSAAWAW---HSHEDRAEGIEGET-LTASPQAPGSPEDSE 931
            +SG    A    P GS G P           + E  A GI+G      +P APGSP    
Sbjct: 1066 ESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG--- 1122

Query: 932  GVPLISLPRVPQGG-SQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKA 990
                   P   QG    PGP+     +   G    D  G  G        GP    GE+ 
Sbjct: 1123 -------PAGQQGAIGSPGPAGPRGPVGPSGPPGKD--GTSGHPGPIGPPGPRGNRGERG 1173

Query: 991  PFTLRTPPG-PAPPQPSLSGLPGPC 1014
                   PG P PP P   G PGPC
Sbjct: 1174 SEGSPGHPGQPGPPGPP--GAPGPC 1196



 Score = 37.0 bits (84), Expect = 0.25
 Identities = 36/134 (26%), Positives = 43/134 (32%), Gaps = 33/134 (24%)

Query: 890  GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPG 949
            G  G P S        +    G +GE+    P  P  P    GV  +  P        PG
Sbjct: 534  GMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGV--MGFPGPKGNDGAPG 591

Query: 950  PSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGP--------- 1000
             +                 G  GG  G   +GP    GE  P   + PPGP         
Sbjct: 592  KN-----------------GERGGPGGPGPQGPPGKNGETGP---QGPPGPTGPGGDKGD 631

Query: 1001 -APPQP-SLSGLPG 1012
              PP P  L GLPG
Sbjct: 632  TGPPGPQGLQGLPG 645



 Score = 36.2 bits (82), Expect = 0.42
 Identities = 38/143 (26%), Positives = 46/143 (32%), Gaps = 16/143 (11%)

Query: 890  GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPG 949
            G  G   S        E+ + G  G      P  P  P    G    S P  P G   P 
Sbjct: 1020 GLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPA 1079

Query: 950  PSRGL----------SLMSSQGSVD-SDHLGYDGGSSGSDSEGP---NDTLGEKAPFTLR 995
             SRG                +G+     H G+ G      S GP      +G   P   R
Sbjct: 1080 GSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPR 1139

Query: 996  TPPGPA--PPQPSLSGLPGPCLP 1016
             P GP+  P +   SG PGP  P
Sbjct: 1140 GPVGPSGPPGKDGTSGHPGPIGP 1162



 Score = 35.4 bits (80), Expect = 0.72
 Identities = 36/134 (26%), Positives = 48/134 (35%), Gaps = 29/134 (21%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQ 947
            P G++G P     A    ++ A+G  G            P    G     +P VP    +
Sbjct: 418  PAGANGAPGLRGGAGEPGKNGAKGEPG------------PRGERGEA--GIPGVPGAKGE 463

Query: 948  PGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDS----EGPNDTLGEKAPFTLRTPPGPAPP 1003
             G         S G   ++ L    G  G+       GPN   GEK P   R  PGPA P
Sbjct: 464  DGKD------GSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGP 517

Query: 1004 -----QPSLSGLPG 1012
                 +P   G+PG
Sbjct: 518  RGAAGEPGRDGVPG 531



 Score = 33.9 bits (76), Expect = 2.1
 Identities = 35/130 (26%), Positives = 40/130 (30%), Gaps = 16/130 (12%)

Query: 890  GSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQA----PGSPEDSEGVPLISLPR---VP 942
            G  G P     A     D A G +G+     P      PGSP     V     P     P
Sbjct: 306  GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAP 365

Query: 943  QGGSQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAP 1002
                +PGP          G       G +G   G    GP    G       R PPGPA 
Sbjct: 366  GQRGEPGPQGHAGAQGPPGPP-----GINGSPGGKGEMGPAGIPGAPGLMGARGPPGPA- 419

Query: 1003 PQPSLSGLPG 1012
                 +G PG
Sbjct: 420  ---GANGAPG 426



 Score = 32.0 bits (71), Expect = 8.0
 Identities = 39/130 (30%), Positives = 48/130 (36%), Gaps = 9/130 (6%)

Query: 888  PGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQ 947
            P G  G+P    +      D A G  GE     P  PG P+   G    + P+ P G + 
Sbjct: 568  PSGPRGQPGVMGFPGPKGNDGAPGKNGE--RGGPGGPG-PQGPPGKNGETGPQGPPGPTG 624

Query: 948  PGPSRG-LSLMSSQGSVDSDHLGYDGGSSGSDSE-GPNDTLGEK-APFTL--RTPPGPAP 1002
            PG  +G       QG       G   G +G   E GP    G   AP        PG   
Sbjct: 625  PGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERG 684

Query: 1003 PQPSLSGLPG 1012
            P P L+G PG
Sbjct: 685  P-PGLAGAPG 693


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 38.9 bits (89), Expect = 0.065
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 703  PVGGRVPLRDLSVTLDVFMLTLPLEVELPTASDPQHHRSTSESSASFPRSPGQPSSLRSD 762
            P+ GR P+   S   +      P +    +AS P+H  +++ S+A+   SP  P+ LR+ 
Sbjct: 1464 PLRGRPPIATFSANPEAKAAAAPFQTSQASASAPRHQPASASSTAA---SPAHPAKLRAQ 1520

Query: 763  DGL-----GPPLPPPEEERHPGLSNLATPHRLAI 791
                    G P P P+   H      A P RL +
Sbjct: 1521 TTAQASTPGQPPPQPQAPSH-AAGQSALPQRLVL 1553


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,839,525
Number of Sequences: 37866
Number of extensions: 6886547
Number of successful extensions: 34230
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 31788
Number of HSP's gapped (non-prelim): 2847
length of query: 2533
length of database: 18,247,518
effective HSP length: 119
effective length of query: 2414
effective length of database: 13,741,464
effective search space: 33171894096
effective search space used: 33171894096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.