Guide to the Human Genome
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Name: KIAA0467 Sequence: fasta or formatted (2533aa) NCBI GI: 71999153
Description:

hypothetical protein LOC23334

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        178           3
 C cysteine            2.1         52           2
 D aspartate           4.9        124           3
 E glutamate           6.9        176           3
 F phenylalanine       3.8         96           3
 G glycine             7.6        192           3
 H histidine           3.4         87           2
 I isoleucine          2.7         68           2
 K lysine              2.1         53           2
 L leucine            12.0        305           4
 M methionine          1.6         41           1
 N asparagine          1.5         37           1
 P proline             9.6        242           3
 Q glutamine           5.1        128           2
 R arginine            7.0        177           3
 S serine              9.3        235           3
 T threonine           4.8        121           2
 V valine              5.8        147           3
 W tryptophan          1.2         30           1
 Y tyrosine            1.7         44           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC23334 
COL1A1                0.003   alpha 1 type I collagen preproprotein 
COL13A1               0.003   alpha 1 type XIII collagen isoform 20 
COL13A1               0.003   alpha 1 type XIII collagen isoform 18 
COL13A1               0.003   alpha 1 type XIII collagen isoform 17 
COL13A1               0.003   alpha 1 type XIII collagen isoform 16 
COL13A1               0.003   alpha 1 type XIII collagen isoform 14 
COL13A1               0.003   alpha 1 type XIII collagen isoform 10 
COL13A1               0.003   alpha 1 type XIII collagen isoform 9 
COL13A1               0.003   alpha 1 type XIII collagen isoform 5 
COL13A1               0.003   alpha 1 type XIII collagen isoform 4 
COL13A1               0.003   alpha 1 type XIII collagen isoform 3 
COL13A1               0.003   alpha 1 type XIII collagen isoform 2 
COL13A1               0.003   alpha 1 type XIII collagen isoform 1 
COL17A1               0.003   alpha 1 type XVII collagen 
C1orf216              0.003   hypothetical protein LOC127703 
COL5A1                0.003   alpha 1 type V collagen preproprotein 
COL9A3                0.003   alpha 3 type IX collagen 
SPEN                  0.003   spen homolog, transcriptional regulator 
WHAMM                 0.003   WAS protein homolog associated with actin, golgi me...
COL5A3                0.003   collagen, type V, alpha 3 preproprotein 
LMTK3                 0.003   lemur tyrosine kinase 3 
COL2A1                0.003   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.003   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A2                0.003   alpha 2 type I collagen 
COL13A1               0.003   alpha 1 type XIII collagen isoform 11 
COL13A1               0.003   alpha 1 type XIII collagen isoform 8 
COL15A1               0.003   alpha 1 type XV collagen precursor 
COL3A1                0.003   collagen type III alpha 1 preproprotein 
EP400                 0.003   E1A binding protein p400 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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