Guide to the Human Genome
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Name: UPF2 Sequence: fasta or formatted (1272aa) NCBI GI: 11693132
Description:

UPF2 regulator of nonsense transcripts homolog

Referenced in:

RNases and RNA Stability

Other entries for this name:
alt mRNA [1272aa] UPF2 regulator of nonsense transcripts homolog
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         64           3
 C cysteine            1.7         22           2
 D aspartate           7.0         89           3
 E glutamate          12.0        153           6
 F phenylalanine       3.6         46           2
 G glycine             3.7         47           3
 H histidine           2.7         34           3
 I isoleucine          4.2         53           2
 K lysine              9.9        126           3
 L leucine            10.0        127           2
 M methionine          2.5         32           2
 N asparagine          5.0         63           2
 P proline             4.2         54           3
 Q glutamine           4.9         62           3
 R arginine            5.9         75           3
 S serine              6.1         77           2
 T threonine           4.0         51           2
 V valine              4.7         60           2
 W tryptophan          0.7          9           2
 Y tyrosine            2.2         28           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   UPF2 regulator of nonsense transcripts homolog [Homo... 
UPF2                  1.000   UPF2 regulator of nonsense transcripts homolog [Homo...
LOC100133599          0.021   PREDICTED: hypothetical protein 
LOC100133599          0.021   PREDICTED: hypothetical protein 
LOC100294088          0.020   PREDICTED: hypothetical protein, partial 
MAP7D2                0.019   MAP7 domain containing 2 
EIF5B                 0.019   eukaryotic translation initiation factor 5B 
TCHH                  0.019   trichohyalin 
LOC283685             0.019   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.019   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.018   PREDICTED: Putative golgin subfamily A member 6-lik...
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform b 
CALD1                 0.018   caldesmon 1 isoform 1 
LOC283767             0.017   golgi autoantigen, golgin subfamily a-like 
INCENP                0.017   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.017   inner centromere protein antigens 135/155kDa isofor...
LOC645202             0.017   PREDICTED: hypothetical protein LOC645202 
LOC727832             0.017   golgi autoantigen, golgin subfamily a-like 
TNIK                  0.017   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.017   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.017   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.017   TRAF2 and NCK interacting kinase isoform 1 
BAT2D1                0.016   HBxAg transactivated protein 2 
RBM25                 0.016   RNA binding motif protein 25 
WDR87                 0.016   NYD-SP11 protein 
MAP7                  0.016   microtubule-associated protein 7 
NEFH                  0.016   neurofilament, heavy polypeptide 200kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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