Guide to the Human Genome
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Name: FNDC3B Sequence: fasta or formatted (1204aa) NCBI GI: 205360934
Description:

fibronectin type III domain containing 3B

Referenced in:

Fibronectin Family

Other entries for this name:
alt mRNA [1204aa] fibronectin type III domain containing 3B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         66           3
 C cysteine            3.2         38           2
 D aspartate           4.2         51           2
 E glutamate           7.1         85           3
 F phenylalanine       2.9         35           2
 G glycine             7.6         91           4
 H histidine           2.5         30           2
 I isoleucine          4.7         57           2
 K lysine              4.6         55           2
 L leucine             7.9         95           2
 M methionine          2.0         24           3
 N asparagine          3.1         37           2
 P proline             8.8        106           2
 Q glutamine           4.1         49           2
 R arginine            4.5         54           2
 S serine              9.0        108           2
 T threonine           7.0         84           2
 V valine              5.9         71           3
 W tryptophan          1.1         13           1
 Y tyrosine            4.6         55           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin type III domain containing 3B 
FNDC3B                1.000   fibronectin type III domain containing 3B 
FNDC3A                0.476   fibronectin type III domain containing 3A isoform 1...
FNDC3A                0.456   fibronectin type III domain containing 3A isoform 2...
TTN                   0.055   titin isoform N2-A 
TTN                   0.055   titin isoform novex-2 
TTN                   0.055   titin isoform novex-1 
TTN                   0.055   titin isoform N2-B 
PTPRF                 0.050   protein tyrosine phosphatase, receptor type, F isof...
PTPRD                 0.050   protein tyrosine phosphatase, receptor type, D isofo...
PTPRF                 0.049   protein tyrosine phosphatase, receptor type, F isof...
USH2A                 0.048   usherin isoform B 
PTPRD                 0.048   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.048   protein tyrosine phosphatase, receptor type, D isofo...
PTPRS                 0.044   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.044   protein tyrosine phosphatase, receptor type, sigma ...
NEO1                  0.042   neogenin homolog 1 
SDK1                  0.042   sidekick 1 
SDK2                  0.037   sidekick 2 
DSCAML1               0.034   Down syndrome cell adhesion molecule like 1 
MYOM1                 0.033   myomesin 1 isoform b 
IGDCC4                0.032   immunoglobulin superfamily, DCC subclass, member 4 [...
PTPRQ                 0.030   protein tyrosine phosphatase, receptor type, Q [Hom...
DCC                   0.029   deleted in colorectal carcinoma 
DSCAM                 0.029   Down syndrome cell adhesion molecule isoform CHD2-42...
IGSF22                0.028   immunoglobulin superfamily, member 22 
PTPRS                 0.028   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.028   protein tyrosine phosphatase, receptor type, sigma ...
MYOM1                 0.028   myomesin 1 isoform a 
PRTG                  0.028   protogenin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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