Guide to the Human Genome
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Name: NRCAM Sequence: fasta or formatted (1304aa) NCBI GI: 81158226
Description:

neuronal cell adhesion molecule isoform A precursor

Referenced in:

Neurons

Other entries for this name:
alt prot [87aa] neuronal cell adhesion molecule isoform C
alt prot [1183aa] neuronal cell adhesion molecule isoform B precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         84           4
 C cysteine            1.2         15           1
 D aspartate           5.4         71           3
 E glutamate           6.7         87           2
 F phenylalanine       3.1         40           2
 G glycine             6.8         89           2
 H histidine           1.9         25           2
 I isoleucine          5.6         73           2
 K lysine              6.1         79           3
 L leucine             7.9        103           2
 M methionine          1.5         20           1
 N asparagine          5.4         70           2
 P proline             7.8        102           3
 Q glutamine           3.5         46           2
 R arginine            3.8         49           2
 S serine              7.7        101           3
 T threonine           6.3         82           2
 V valine              7.8        102           3
 W tryptophan          1.6         21           1
 Y tyrosine            3.5         45           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuronal cell adhesion molecule isoform A precursor ... 
NRCAM                 0.787   neuronal cell adhesion molecule isoform B precursor ...
NFASC                 0.407   neurofascin isoform 1 precursor 
NFASC                 0.385   neurofascin isoform 2 precursor 
NFASC                 0.383   neurofascin isoform 3 precursor 
NFASC                 0.383   neurofascin isoform 4 precursor 
L1CAM                 0.340   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.338   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.337   L1 cell adhesion molecule isoform 1 precursor 
CHL1                  0.325   cell adhesion molecule with homology to L1CAM precur...
NFASC                 0.246   neurofascin isoform 5 precursor 
NFASC                 0.242   neurofascin isoform 6 precursor 
CNTN2                 0.132   contactin 2 precursor 
CNTN3                 0.129   contactin 3 
CNTN5                 0.127   contactin 5 isoform short 
CNTN5                 0.127   contactin 5 isoform long 
CNTN4                 0.124   contactin 4 isoform a precursor 
CNTN6                 0.117   contactin 6 
CNTN1                 0.108   contactin 1 isoform 1 precursor 
CNTN1                 0.108   contactin 1 isoform 2 precursor 
SDK1                  0.094   sidekick 1 
CNTN4                 0.091   contactin 4 isoform c precursor 
SDK2                  0.091   sidekick 2 
NEO1                  0.078   neogenin homolog 1 
DSCAML1               0.076   Down syndrome cell adhesion molecule like 1 
DSCAM                 0.075   Down syndrome cell adhesion molecule isoform CHD2-42...
DCC                   0.073   deleted in colorectal carcinoma 
ROBO2                 0.071   roundabout, axon guidance receptor, homolog 2 isofor...
ROBO2                 0.070   roundabout, axon guidance receptor, homolog 2 isofo...
PTPRF                 0.066   protein tyrosine phosphatase, receptor type, F isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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