Guide to the Human Genome
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Name: NRCAM Sequence: fasta or formatted (1183aa) NCBI GI: 81158224
Description:

neuronal cell adhesion molecule isoform B precursor

Referenced in:

Neurons

Other entries for this name:
alt prot [87aa] neuronal cell adhesion molecule isoform C
alt prot [1304aa] neuronal cell adhesion molecule isoform A precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         71           2
 C cysteine            1.3         15           1
 D aspartate           5.7         67           3
 E glutamate           6.4         76           2
 F phenylalanine       3.0         35           2
 G glycine             6.3         75           2
 H histidine           2.0         24           2
 I isoleucine          5.8         69           2
 K lysine              6.2         73           3
 L leucine             8.2         97           2
 M methionine          1.6         19           1
 N asparagine          5.5         65           2
 P proline             7.7         91           3
 Q glutamine           3.8         45           2
 R arginine            3.8         45           2
 S serine              7.9         93           3
 T threonine           6.4         76           2
 V valine              7.5         89           3
 W tryptophan          1.6         19           1
 Y tyrosine            3.3         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuronal cell adhesion molecule isoform B precursor ... 
NRCAM                 0.869   neuronal cell adhesion molecule isoform A precursor ...
NFASC                 0.508   neurofascin isoform 4 precursor 
NFASC                 0.505   neurofascin isoform 3 precursor 
NFASC                 0.501   neurofascin isoform 2 precursor 
NFASC                 0.429   neurofascin isoform 1 precursor 
CHL1                  0.357   cell adhesion molecule with homology to L1CAM precur...
L1CAM                 0.312   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.310   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.310   L1 cell adhesion molecule isoform 1 precursor 
NFASC                 0.269   neurofascin isoform 6 precursor 
NFASC                 0.266   neurofascin isoform 5 precursor 
CNTN2                 0.147   contactin 2 precursor 
CNTN3                 0.146   contactin 3 
CNTN5                 0.141   contactin 5 isoform long 
CNTN5                 0.141   contactin 5 isoform short 
CNTN4                 0.140   contactin 4 isoform a precursor 
CNTN6                 0.131   contactin 6 
CNTN1                 0.120   contactin 1 isoform 1 precursor 
CNTN1                 0.120   contactin 1 isoform 2 precursor 
CNTN4                 0.102   contactin 4 isoform c precursor 
SDK2                  0.100   sidekick 2 
SDK1                  0.099   sidekick 1 
DSCAM                 0.086   Down syndrome cell adhesion molecule isoform CHD2-42...
DSCAML1               0.086   Down syndrome cell adhesion molecule like 1 
NEO1                  0.084   neogenin homolog 1 
DCC                   0.079   deleted in colorectal carcinoma 
PTPRF                 0.074   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.074   protein tyrosine phosphatase, receptor type, F isof...
HMCN1                 0.072   hemicentin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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