Guide to the Human Genome
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Name: CUGBP1 Sequence: fasta or formatted (483aa) NCBI GI: 38570081
Description:

CUG triplet repeat, RNA-binding protein 1 isoform 2

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [482aa] CUG triplet repeat, RNA-binding protein 1 isoform 1
alt prot [486aa] CUG triplet repeat, RNA-binding protein 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         53           4
 C cysteine            1.4          7           2
 D aspartate           3.5         17           1
 E glutamate           3.3         16           2
 F phenylalanine       3.7         18           1
 G glycine             8.3         40           2
 H histidine           1.4          7           2
 I isoleucine          3.5         17           1
 K lysine              5.0         24           2
 L leucine             9.9         48           2
 M methionine          4.3         21           1
 N asparagine          6.0         29           2
 P proline             4.6         22           2
 Q glutamine           8.7         42           3
 R arginine            2.9         14           1
 S serine              9.9         48           5
 T threonine           5.6         27           2
 V valine              4.3         21           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 
CUGBP1                0.992   CUG triplet repeat, RNA-binding protein 1 isoform 1 [...
CUGBP1                0.987   CUG triplet repeat, RNA-binding protein 1 isoform 3 ...
CUGBP2                0.810   CUG triplet repeat, RNA binding protein 2 isoform 3 ...
CUGBP2                0.803   CUG triplet repeat, RNA binding protein 2 isoform 4...
CUGBP2                0.803   CUG triplet repeat, RNA binding protein 2 isoform 1 ...
CUGBP2                0.803   CUG triplet repeat, RNA binding protein 2 isoform 2...
TNRC4                 0.378   trinucleotide repeat containing 4 
BRUNOL6               0.367   bruno-like 6, RNA binding protein 
BRUNOL4               0.362   bruno-like 4, RNA binding protein isoform 2 
BRUNOL4               0.361   bruno-like 4, RNA binding protein isoform 1 
BRUNOL4               0.359   bruno-like 4, RNA binding protein isoform 3 
BRUNOL5               0.359   bruno-like 5, RNA binding protein isoform 1 
BRUNOL4               0.299   bruno-like 4, RNA binding protein isoform 4 
BRUNOL5               0.112   bruno-like 5, RNA binding protein isoform 2 
ELAVL1                0.064   ELAV-like 1 
ELAVL4                0.060   ELAV-like 4 isoform 1 
ELAVL4                0.060   ELAV-like 4 isoform 5 
ELAVL4                0.060   ELAV-like 4 isoform 4 
ELAVL4                0.060   ELAV-like 4 isoform 3 
ELAVL4                0.060   ELAV-like 4 isoform 2 
ELAVL2                0.059   ELAV (embryonic lethal, abnormal vision, Drosophila...
ELAVL3                0.058   ELAV-like protein 3 isoform 1 
ELAVL3                0.055   ELAV-like protein 3 isoform 2 
MYEF2                 0.053   myelin expression factor 2 
RBM4                  0.051   RNA binding motif protein 4 
RBM4B                 0.051   RNA binding motif protein 4B 
RBM45                 0.049   RNA binding motif protein 45 
TARDBP                0.046   TAR DNA binding protein 
MSI1                  0.045   musashi 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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