Guide to the Human Genome
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Name: CUGBP2 Sequence: fasta or formatted (490aa) NCBI GI: 68303645
Description:

CUG triplet repeat, RNA binding protein 2 isoform 1

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [521aa] CUG triplet repeat, RNA binding protein 2 isoform 2
alt prot [488aa] CUG triplet repeat, RNA binding protein 2 isoform 4
alt prot [508aa] CUG triplet repeat, RNA binding protein 2 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         62           7
 C cysteine            1.4          7           2
 D aspartate           3.5         17           1
 E glutamate           3.1         15           2
 F phenylalanine       3.9         19           1
 G glycine             8.2         40           2
 H histidine           1.2          6           2
 I isoleucine          4.1         20           1
 K lysine              4.9         24           2
 L leucine             9.8         48           2
 M methionine          4.1         20           1
 N asparagine          5.9         29           2
 P proline             4.5         22           2
 Q glutamine           9.4         46           3
 R arginine            2.9         14           2
 S serine              8.2         40           3
 T threonine           6.3         31           2
 V valine              3.7         18           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CUG triplet repeat, RNA binding protein 2 isoform 1 ... 
CUGBP2                1.000   CUG triplet repeat, RNA binding protein 2 isoform 2...
CUGBP2                0.982   CUG triplet repeat, RNA binding protein 2 isoform 3 ...
CUGBP2                0.982   CUG triplet repeat, RNA binding protein 2 isoform 4...
CUGBP1                0.793   CUG triplet repeat, RNA-binding protein 1 isoform 2 ...
CUGBP1                0.792   CUG triplet repeat, RNA-binding protein 1 isoform 1 [...
CUGBP1                0.786   CUG triplet repeat, RNA-binding protein 1 isoform 3 ...
TNRC4                 0.385   trinucleotide repeat containing 4 
BRUNOL6               0.372   bruno-like 6, RNA binding protein 
BRUNOL5               0.365   bruno-like 5, RNA binding protein isoform 1 
BRUNOL4               0.351   bruno-like 4, RNA binding protein isoform 2 
BRUNOL4               0.349   bruno-like 4, RNA binding protein isoform 1 
BRUNOL4               0.348   bruno-like 4, RNA binding protein isoform 3 
BRUNOL4               0.290   bruno-like 4, RNA binding protein isoform 4 
BRUNOL5               0.127   bruno-like 5, RNA binding protein isoform 2 
ELAVL1                0.061   ELAV-like 1 
ELAVL2                0.061   ELAV (embryonic lethal, abnormal vision, Drosophila...
ELAVL4                0.060   ELAV-like 4 isoform 1 
ELAVL4                0.060   ELAV-like 4 isoform 5 
ELAVL4                0.060   ELAV-like 4 isoform 4 
ELAVL4                0.060   ELAV-like 4 isoform 3 
ELAVL4                0.060   ELAV-like 4 isoform 2 
ELAVL3                0.054   ELAV-like protein 3 isoform 1 
ELAVL3                0.054   ELAV-like protein 3 isoform 2 
RBM28                 0.049   RNA binding motif protein 28 
RBM45                 0.047   RNA binding motif protein 45 
RBMS3                 0.046   RNA binding motif, single stranded interacting prote...
RBMS3                 0.046   RNA binding motif, single stranded interacting prote...
RBMS3                 0.046   RNA binding motif, single stranded interacting prote...
TIAL1                 0.045   TIA-1 related protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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