Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SFRS9 Sequence: fasta or formatted (221aa) NCBI GI: 4506903
Description:

splicing factor, arginine/serine-rich 9

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          7           1
 C cysteine            0.9          2           1
 D aspartate           8.6         19           2
 E glutamate           7.2         16           1
 F phenylalanine       4.1          9           1
 G glycine            12.7         28           2
 H histidine           1.8          4           1
 I isoleucine          2.3          5           1
 K lysine              3.6          8           1
 L leucine             5.4         12           1
 M methionine          1.8          4           1
 N asparagine          1.8          4           1
 P proline             6.3         14           2
 Q glutamine           1.8          4           1
 R arginine           13.6         30           2
 S serine              7.7         17           1
 T threonine           2.7          6           1
 V valine              5.4         12           1
 W tryptophan          1.4          3           1
 Y tyrosine            7.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   splicing factor, arginine/serine-rich 9 
SFRS1                 0.610   splicing factor, arginine/serine-rich 1 isoform 1 [Ho...
SFRS1                 0.525   splicing factor, arginine/serine-rich 1 isoform 2 [...
SFRS4                 0.249   splicing factor, arginine/serine-rich 4 
SFRS6                 0.235   arginine/serine-rich splicing factor 6 
SFRS5                 0.217   splicing factor, arginine/serine-rich 5 
SFRS5                 0.217   splicing factor, arginine/serine-rich 5 
SFRS7                 0.108   splicing factor, arginine/serine-rich 7 
RBM4B                 0.099   RNA binding motif protein 4B 
RBM4                  0.094   RNA binding motif protein 4 
RBMXL1                0.081   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.081   RNA binding motif protein, X-linked-like 1 
SFRS3                 0.081   splicing factor, arginine/serine-rich 3 
RBMX                  0.078   RNA binding motif protein, X-linked 
LOC100288788          0.074   PREDICTED: similar to RNA binding motif protein, X-...
LOC100288788          0.074   PREDICTED: hypothetical protein XP_002343863 
G3BP1                 0.067   Ras-GTPase-activating protein SH3-domain-binding prot...
G3BP1                 0.067   Ras-GTPase-activating protein SH3-domain-binding pro...
CIRBP                 0.063   cold inducible RNA binding protein 
TIAL1                 0.063   TIA-1 related protein isoform 1 
SFRS2                 0.058   splicing factor, arginine/serine-rich 2 
TIA1                  0.056   TIA1 protein isoform 1 
TIA1                  0.056   TIA1 protein isoform 2 
G3BP2                 0.056   Ras-GTPase activating protein SH3 domain-binding pro...
G3BP2                 0.056   Ras-GTPase activating protein SH3 domain-binding pro...
G3BP2                 0.056   Ras-GTPase activating protein SH3 domain-binding pro...
PSPC1                 0.054   paraspeckle protein 1 
SFRS2B                0.054   splicing factor, arginine/serine-rich 2B 
RBMY1A1               0.052   RNA binding motif protein, Y-linked, family 1, member...
RBMY1E                0.052   RNA binding motif protein, Y-linked, family 1, membe...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press