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Search of human proteins with 6912488
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912488 LSM5 homolog, U6 small nuclear RNA associated
isoform a [Homo sapiens]
(91 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform... 182 5e-47
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo... 126 4e-30
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo... 126 4e-30
gi|7657315 Lsm3 protein [Homo sapiens] 45 1e-05
gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s... 44 4e-05
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens] 43 5e-05
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens] 43 5e-05
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ... 43 5e-05
gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo s... 36 0.008
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom... 34 0.029
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p... 34 0.029
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p... 34 0.029
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 34 0.029
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 34 0.029
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.038
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.038
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.038
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.038
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 33 0.038
gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens] 33 0.050
gi|169160654 PREDICTED: similar to small nuclear ribonucleoprote... 33 0.065
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] 33 0.065
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 30 0.32
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 30 0.32
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens] 30 0.32
gi|169194552 PREDICTED: similar to small nuclear ribonucleoprote... 30 0.42
gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo ... 30 0.55
gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo sa... 30 0.55
gi|40217825 slit and trk like 6 [Homo sapiens] 30 0.55
gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo ... 28 1.2
>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform
a [Homo sapiens]
Length = 91
Score = 182 bits (462), Expect = 5e-47
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT 60
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
Sbjct: 1 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT 60
Query: 61 PEGRRITKLDQILLNGNNITMLVPGGEGPEV 91
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
Sbjct: 61 PEGRRITKLDQILLNGNNITMLVPGGEGPEV 91
>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 126 bits (316), Expect = 4e-30
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 30 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGP 89
MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGP
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGP 60
Query: 90 EV 91
EV
Sbjct: 61 EV 62
>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 126 bits (316), Expect = 4e-30
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 30 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGP 89
MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGP
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGP 60
Query: 90 EV 91
EV
Sbjct: 61 EV 62
>gi|7657315 Lsm3 protein [Homo sapiens]
Length = 102
Score = 45.1 bits (105), Expect = 1e-05
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQIL 73
PL+L+ + RI++ M++D+E+ G L +D +NM+L DV E T E T +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
Query: 74 LNGNNITMLVPGGEG 88
NI ML G+G
Sbjct: 77 STKRNIPMLFVRGDG 91
>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
sapiens]
Length = 92
Score = 43.5 bits (101), Expect = 4e-05
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 14 PLELVDKCIGSRIHIVM----KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
P+ L+ + + +R I + + + I G ++GFD+++N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 70 DQILLNGNNITML 82
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 43.1 bits (100), Expect = 5e-05
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 14 PLELVDKCIGSRIHIVM----KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
P+ L+ + + +R I + + + I G ++GFD+++N+VL+D E + R+ +L
Sbjct: 17 PISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 70 DQILLNGNNITML 82
+I+L G NIT+L
Sbjct: 75 GRIMLKGGNITLL 87
>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 43.1 bits (100), Expect = 5e-05
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 14 PLELVDKCIGSRIHIVM----KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
P+ L+ + + +R I + + + I G ++GFD+++N+VL+D E + R+ +L
Sbjct: 17 PISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 70 DQILLNGNNITML 82
+I+L G NIT+L
Sbjct: 75 GRIMLKGGNITLL 87
>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
sapiens]
Length = 92
Score = 43.1 bits (100), Expect = 5e-05
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 14 PLELVDKCIGSRIHIVM----KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
P+ L+ + + +R I + + + I G ++GFD+++N+VL+D E + R+ +L
Sbjct: 17 PISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 70 DQILLNGNNITML 82
+I+L G NIT+L
Sbjct: 75 GRIMLKGGNITLL 87
>gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
sapiens]
Length = 76
Score = 35.8 bits (81), Expect = 0.008
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
S+ P EL K + ++ + + + + G L GFD F+N+V+++ E + + I
Sbjct: 2 SKAHPPEL-KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI--- 57
Query: 70 DQILLNGNNITML 82
+++ GN+I ML
Sbjct: 58 GMVVIRGNSIIML 70
>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
sapiens]
Length = 74
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
S+ P EL K + + + + + G L GFD F+N+V+++ E + + + I +
Sbjct: 2 SKAHPPEL-KKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
Query: 70 DQILLNGNNITML 82
+ + GN+I ML
Sbjct: 61 E---IRGNSIIML 70
>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
S+ P EL K + + + + + G L GFD F+N+V+++ E + + + I +
Sbjct: 2 SKAHPPEL-KKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
Query: 70 DQILLNGNNITML 82
+ + GN+I ML
Sbjct: 61 E---IRGNSIIML 70
>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
S+ P EL K + + + + + G L GFD F+N+V+++ E + + + I +
Sbjct: 2 SKAHPPEL-KKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
Query: 70 DQILLNGNNITML 82
+ + GN+I ML
Sbjct: 61 E---IRGNSIIML 70
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 33.9 bits (76), Expect = 0.029
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-EITPEGRRITKLDQ------ILL 74
I R+ +++ + +GT FD +N++L D EF +I P+ + + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 75 NGNNITMLVPGGEGPE 90
G N+ + G P+
Sbjct: 73 RGENLVSMTVEGPPPK 88
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
isoform B [Homo sapiens]
Length = 231
Score = 33.9 bits (76), Expect = 0.029
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-EITPEGRRITKLDQ------ILL 74
I R+ +++ + +GT FD +N++L D EF +I P+ + + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 75 NGNNITMLVPGGEGPE 90
G N+ + G P+
Sbjct: 73 RGENLVSMTVEGPPPK 88
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE-------ITPEGRRITKLDQILL 74
I R+ +++ + +GT FD +N++L D EF PE L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 75 NGNNITMLVPGGEGPE 90
G N+ + G P+
Sbjct: 73 RGENLVSMTVEGPPPK 88
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE-------ITPEGRRITKLDQILL 74
I R+ +++ + +GT FD +N++L D EF PE L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 75 NGNNITMLVPGGEGPE 90
G N+ + G P+
Sbjct: 73 RGENLVSMTVEGPPPK 88
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE-------ITPEGRRITKLDQILL 74
I R+ +++ + +GT FD +N++L D EF PE L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 75 NGNNITMLVPGGEGPE 90
G N+ + G P+
Sbjct: 73 RGENLVSMTVEGPPPK 88
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE-------ITPEGRRITKLDQILL 74
I R+ +++ + +GT FD +N++L D EF PE L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 75 NGNNITMLVPGGEGPE 90
G N+ + G P+
Sbjct: 73 RGENLVSMTVEGPPPK 88
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE-------ITPEGRRITKLDQILL 74
I R+ +++ + +GT FD +N++L D EF PE L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 75 NGNNITMLVPGGEGPE 90
G N+ + G P+
Sbjct: 73 RGENLVSMTVEGPPPK 88
>gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo
sapiens]
Length = 103
Score = 33.1 bits (74), Expect = 0.050
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR-RIT----KLDQI 72
+ K I I + + +E G L GFD +N+VL+ E+ P+ + ++T +L +
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74
Query: 73 LLNGNNITMLVP 84
+ G ++ ++ P
Sbjct: 75 VCRGTSVVLICP 86
>gi|169160654 PREDICTED: similar to small nuclear
ribonucleoprotein D1 polypeptide 16kDa [Homo sapiens]
Length = 119
Score = 32.7 bits (73), Expect = 0.065
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 26 IHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLV 83
+ I +K+ ++ GT+ G D +N L+ V ++TP+ R +L+ + + GNNI +
Sbjct: 15 VTIALKNRTQVHGTVTGVDVSMNTHLKAV---KMTPKNREPVQLETLSIRGNNIRYFI 69
>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
sapiens]
Length = 96
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEI-TPEGRRITKLDQILLNG 76
++ I + ++ + IVGTL GFD +N++L++ E + +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 77 NNITML 82
+N+ ++
Sbjct: 65 DNVAVI 70
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-EITPEGRRITKLDQ------ILL 74
I R+ +++ G FD VN++L D EF +I P+ + +L++ +LL
Sbjct: 158 IDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLL 217
Query: 75 NGNNITMLVPGGEGPE 90
+G N+ + G P+
Sbjct: 218 HGENLVSMTVEGLPPK 233
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-EITPEGRRITKLDQ------ILL 74
I R+ +++ G FD VN++L D EF +I P+ + +L++ +LL
Sbjct: 158 IDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLL 217
Query: 75 NGNNITMLVPGGEGPE 90
+G N+ + G P+
Sbjct: 218 HGENLVSMTVEGLPPK 233
>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-EITPEGRRITKLDQ------ILL 74
I R+ +++ G FD VN++L D EF +I P+ + +L++ +LL
Sbjct: 158 IDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLL 217
Query: 75 NGNNITMLVPGGEGPE 90
+G N+ + G P+
Sbjct: 218 HGENLVSMTVEGLPPK 233
>gi|169194552 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 62
Score = 30.0 bits (66), Expect = 0.42
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 25 RIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 82
++ + + + + G L G D F+N+V+++ E + + +++ GN+I ML
Sbjct: 4 KLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQ---NNTGMVVIRGNSILML 58
>gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo
sapiens]
Length = 108
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Query: 14 PLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDV----TEFEITPEGRRIT 67
PL ++ + + + +++ +++K+++G + FD NMVLE+V TE + +G++ +
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 77
Query: 68 K-------LDQILLNGNNITMLV 83
K + ++ L G+++ +++
Sbjct: 78 KPVNKDRYISKMFLRGDSVIVVL 100
>gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo
sapiens]
Length = 118
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Query: 14 PLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDV----TEFEITPEGRRIT 67
PL ++ + + + +++ +++K+++G + FD NMVLE+V TE + +G++ +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 68 K-------LDQILLNGNNITMLV 83
K + ++ L G+++ +++
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVVL 110
>gi|40217825 slit and trk like 6 [Homo sapiens]
Length = 841
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 23 GSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR--RITKLDQILLNGNNIT 80
G+ IH +MKSD TL M+ E+ EG +T+L ++ LNGN++T
Sbjct: 372 GNIIHSLMKSDLVEYFTL-------EMLHLGNNRIEVLEEGSFMNLTRLQKLYLNGNHLT 424
Query: 81 MLVPG 85
L G
Sbjct: 425 KLSKG 429
>gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo
sapiens]
Length = 95
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVT 55
+G + + +K+D I GTL D ++N+ L D++
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDIS 44
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.139 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,372,845
Number of Sequences: 37866
Number of extensions: 117462
Number of successful extensions: 260
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 43
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.