Guide to the Human Genome
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Name: LOC100133224 Sequence: fasta or formatted (318aa) NCBI GI: 169215838
Description:

PREDICTED: similar to hCG2041320

Referenced in:

Capping and Splicing

Other entries for this name:
alt mRNA [318aa] PREDICTED: similar to hCG2041320
alt mRNA [318aa] PREDICTED: similar to hCG2041320
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         30           2
 C cysteine            1.6          5           1
 D aspartate           1.9          6           1
 E glutamate           4.1         13           2
 F phenylalanine       4.1         13           2
 G glycine            10.7         34           2
 H histidine           4.1         13           1
 I isoleucine          4.4         14           1
 K lysine              4.7         15           1
 L leucine            11.0         35           2
 M methionine          1.9          6           1
 N asparagine          2.2          7           1
 P proline            10.1         32           3
 Q glutamine           5.7         18           2
 R arginine            6.3         20           2
 S serine              6.9         22           4
 T threonine           3.5         11           1
 V valine              5.7         18           2
 W tryptophan          1.3          4           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2041320 
LOC100133224          1.000   PREDICTED: similar to hCG2041320 
LOC100133224          1.000   PREDICTED: similar to hCG2041320 
SNRPN                 0.343   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.343   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.343   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.343   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.343   small nuclear ribonucleoprotein polypeptide N 
SNRPB                 0.333   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.333   small nuclear ribonucleoprotein polypeptide B/B' isof...
RAPH1                 0.021   Ras association and pleckstrin homology domains 1 is...
COL24A1               0.019   collagen, type XXIV, alpha 1 
COL8A1                0.019   alpha 1 type VIII collagen precursor 
COL8A1                0.019   alpha 1 type VIII collagen precursor 
ELN                   0.018   elastin isoform e precursor 
ELN                   0.018   elastin isoform b precursor 
ELN                   0.018   elastin isoform a precursor 
COL5A2                0.018   alpha 2 type V collagen preproprotein 
COL1A1                0.016   alpha 1 type I collagen preproprotein 
CDX1                  0.016   caudal type homeobox 1 
MAPK7                 0.016   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.016   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.016   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.016   mitogen-activated protein kinase 7 isoform 2 
COL2A1                0.016   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.016   collagen, type II, alpha 1 isoform 2 precursor [Hom...
ROD1                  0.016   ROD1 regulator of differentiation 1 
LOC100293055          0.014   PREDICTED: similar to COL22A1 protein 
COL8A2                0.014   collagen, type VIII, alpha 2 
COL22A1               0.014   collagen, type XXII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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