LOC100133224 9108

Name: LOC100133224	Sequence: fasta or formatted (318aa)		NCBI GI: 169216044
Description: PREDICTED: similar to hCG2041320		Referenced in: Capping and Splicing
Other entries for this name: alt mRNA [318aa] PREDICTED: similar to hCG2041320 alt mRNA [318aa] PREDICTED: similar to hCG2041320
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.4 30 2 C cysteine 1.6 5 1 D aspartate 1.9 6 1 E glutamate 4.1 13 2 F phenylalanine 4.1 13 2 G glycine 10.7 34 2 H histidine 4.1 13 1 I isoleucine 4.4 14 1 K lysine 4.7 15 1 L leucine 11.0 35 2 M methionine 1.9 6 1 N asparagine 2.2 7 1 P proline 10.1 32 3 Q glutamine 5.7 18 2 R arginine 6.3 20 2 S serine 6.9 22 4 T threonine 3.5 11 1 V valine 5.7 18 2 W tryptophan 1.3 4 1 Y tyrosine 0.6 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to hCG2041320 LOC100133224 1.000 PREDICTED: similar to hCG2041320 LOC100133224 1.000 PREDICTED: similar to hCG2041320 SNRPN 0.343 small nuclear ribonucleoprotein polypeptide N SNRPN 0.343 small nuclear ribonucleoprotein polypeptide N SNRPN 0.343 small nuclear ribonucleoprotein polypeptide N SNRPN 0.343 small nuclear ribonucleoprotein polypeptide N SNRPN 0.343 small nuclear ribonucleoprotein polypeptide N SNRPB 0.333 small nuclear ribonucleoprotein polypeptide B/B' iso... SNRPB 0.333 small nuclear ribonucleoprotein polypeptide B/B' isof... RAPH1 0.021 Ras association and pleckstrin homology domains 1 is... COL24A1 0.019 collagen, type XXIV, alpha 1 COL8A1 0.019 alpha 1 type VIII collagen precursor COL8A1 0.019 alpha 1 type VIII collagen precursor ELN 0.018 elastin isoform e precursor ELN 0.018 elastin isoform b precursor ELN 0.018 elastin isoform a precursor COL5A2 0.018 alpha 2 type V collagen preproprotein COL1A1 0.016 alpha 1 type I collagen preproprotein CDX1 0.016 caudal type homeobox 1 MAPK7 0.016 mitogen-activated protein kinase 7 isoform 1 MAPK7 0.016 mitogen-activated protein kinase 7 isoform 1 MAPK7 0.016 mitogen-activated protein kinase 7 isoform 1 MAPK7 0.016 mitogen-activated protein kinase 7 isoform 2 COL2A1 0.016 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.016 collagen, type II, alpha 1 isoform 2 precursor [Hom... ROD1 0.016 ROD1 regulator of differentiation 1 LOC100293055 0.014 PREDICTED: similar to COL22A1 protein COL8A2 0.014 collagen, type VIII, alpha 2 COL22A1 0.014 collagen, type XXII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.