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Search of human proteins with 68800138
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c
[Homo sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [H... 354 2e-98
gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [H... 354 2e-98
gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... 354 2e-98
gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary... 314 3e-86
gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary... 310 3e-85
gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 205 2e-53
gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 117 6e-27
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 92 2e-19
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 45 4e-05
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 44 5e-05
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 44 5e-05
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 44 5e-05
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 44 5e-05
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 44 6e-05
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 44 8e-05
gi|224549005 RNA binding motif protein 17 [Homo sapiens] 42 2e-04
gi|14249678 RNA binding motif protein 17 [Homo sapiens] 42 2e-04
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 42 2e-04
gi|9966841 cell death regulator aven [Homo sapiens] 42 2e-04
gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho... 42 2e-04
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 42 3e-04
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ... 42 3e-04
gi|9558733 transformer-2 alpha [Homo sapiens] 42 3e-04
gi|12056465 fibrillarin [Homo sapiens] 41 5e-04
gi|14670268 RD RNA-binding protein [Homo sapiens] 41 5e-04
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 41 5e-04
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ... 41 5e-04
gi|52426743 cisplatin resistance-associated overexpressed protei... 40 7e-04
gi|19923485 cisplatin resistance-associated overexpressed protei... 40 7e-04
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 40 0.001
>gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [Homo
sapiens]
Length = 167
Score = 354 bits (908), Expect = 2e-98
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR
Sbjct: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
Query: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 120
WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH
Sbjct: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 120
Query: 121 RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 167
RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
Sbjct: 121 RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 167
>gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [Homo
sapiens]
Length = 240
Score = 354 bits (908), Expect = 2e-98
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR
Sbjct: 74 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 133
Query: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 120
WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH
Sbjct: 134 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 193
Query: 121 RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 167
RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
Sbjct: 194 RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 240
>gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Homo
sapiens]
Length = 240
Score = 354 bits (908), Expect = 2e-98
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR
Sbjct: 74 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 133
Query: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 120
WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH
Sbjct: 134 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 193
Query: 121 RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 167
RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF
Sbjct: 194 RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 240
>gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 314 bits (804), Expect = 3e-86
Identities = 152/172 (88%), Positives = 155/172 (90%), Gaps = 5/172 (2%)
Query: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
+QEHYDEFFEEVF E+ EKYGEVEEMNVCDNLGDHLVGNVY K REEDAEKAVIDLNNR
Sbjct: 72 VQEHYDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREEDAEKAVIDLNNR 131
Query: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 120
WFNGQPIHAELSPVTDFR ACCRQYEMGECTRGGFCNFMHLKPISRELRREL G+RRKKH
Sbjct: 132 WFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELRRELCGQRRKKH 191
Query: 121 RSRSRSRERRSRSRDRGRGGGGGGG-----GGGGGRERDRRRSRDRERSGRF 167
RSRSRSRER SRS DRG G GGGGG GGGGGRERDRRR RDRERSGRF
Sbjct: 192 RSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERSGRF 243
>gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 310 bits (795), Expect = 3e-85
Identities = 151/172 (87%), Positives = 154/172 (89%), Gaps = 5/172 (2%)
Query: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
+QEH DEFFEEVF E+ EKYGEVEEMNVCDNLGDHLVGNVY K REEDAEKAVIDLNNR
Sbjct: 72 VQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREEDAEKAVIDLNNR 131
Query: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 120
WFNGQPIHAELSPVTDFR ACCRQYEMGECTRGGFCNFMHLKPISRELRREL G+RRKKH
Sbjct: 132 WFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELRRELCGQRRKKH 191
Query: 121 RSRSRSRERRSRSRDRGRGGGGGGG-----GGGGGRERDRRRSRDRERSGRF 167
RSRSRSRER SRS DRG G GGGGG GGGGGRERDRRR RDRERSGRF
Sbjct: 192 RSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERSGRF 243
>gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
1 [Homo sapiens]
Length = 181
Score = 205 bits (521), Expect = 2e-53
Identities = 95/130 (73%), Positives = 111/130 (85%), Gaps = 5/130 (3%)
Query: 8 FFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 67
F +EVFTE++EKYGE+EEMNVCDNLGDHLVGNVYVKFRREED E+AV +L+NRWFNGQ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
Query: 68 HAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGR--RRK---KHRS 122
H ELSPVTDFRE+CCRQYEMGECTRGGFCNFMHL+PIS+ L+R+LYGR RR+ + +
Sbjct: 102 HGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGRGPRRRSPPRFHT 161
Query: 123 RSRSRERRSR 132
RER R
Sbjct: 162 GHHPRERNHR 171
>gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
2 [Homo sapiens]
Length = 202
Score = 117 bits (292), Expect = 6e-27
Identities = 51/75 (68%), Positives = 60/75 (80%)
Query: 8 FFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 67
F +EVFTE++EKYGE+EEMNVCDNLGDHLVGNVYVKFRREED E+AV +L+NRWFNGQ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
Query: 68 HAELSPVTDFREACC 82
H + V C
Sbjct: 102 HGNVPEVASATSCIC 116
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 92.4 bits (228), Expect = 2e-19
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 64/225 (28%)
Query: 3 EHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF 62
+ + +F+E+V E + G+V + V NL HL GNVYV+++ EE+ + A+ N RW+
Sbjct: 234 QQFLDFYEDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWY 292
Query: 63 NGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHL--KPISR--ELRRELY----- 113
G+ + E PVT ++ A C +E+ +C RG CNF+H+ P + E R++Y
Sbjct: 293 AGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDR 352
Query: 114 --------------------------GRR-----------------------RKKHRSRS 124
GRR +K H+ S
Sbjct: 353 TGSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKSSRHRGKKSHKRTS 412
Query: 125 RSRER-----RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 164
+SRER R R+RDR R G G R R RR R R +S
Sbjct: 413 KSRERHNSRSRGRNRDRSRDRSRGRGSRSRSRSRSRRSRRSRSQS 457
Score = 38.5 bits (88), Expect = 0.003
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 114 GRRRKKHRSRSRSRERRSRSRDRG-RGGGGGGGGGGGGRERDRRRSRDRERS 164
GR R + R RSR R RSRSR R R R R RRRS +R+R+
Sbjct: 424 GRNRDRSRDRSRGRGSRSRSRSRSRRSRRSRSQSSSRSRSRGRRRSGNRDRT 475
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 44.7 bits (104), Expect = 4e-05
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 106 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSG 165
RE RE + R++ RSRSR R RRSRSRD+ R+R RR SR RER+
Sbjct: 242 RERSRER-DKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR 300
Query: 166 R 166
R
Sbjct: 301 R 301
Score = 39.3 bits (90), Expect = 0.002
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 15/153 (9%)
Query: 18 EKYGEVEEMN-VCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTD 76
E YG ++ ++ V G ++++ E D A + + +G+ + ++
Sbjct: 124 EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183
Query: 77 FREACCRQYE--MGECTRGGF-CNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRS 133
+ R+ +G RGG N H E G HR R R RER R
Sbjct: 184 VKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRE 243
Query: 134 RDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
R R R +ER+RRRSR R+R R
Sbjct: 244 RSRER-----------DKERERRRSRSRDRRRR 265
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 22/74 (29%)
Query: 115 RRRKKHRSRSRSRERRSRSR-DRGRGGGG---------------------GGGGGGGGRE 152
R RK+ SRSR R RR R R + RGGGG G G G E
Sbjct: 286 RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEE 345
Query: 153 RDRRRSRDRERSGR 166
+ R R R+R RS R
Sbjct: 346 KGRDRDRERRRSHR 359
Score = 37.7 bits (86), Expect = 0.005
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 106 RELRRELYGRRRKKHRSRSRSRERR------SRSRDRGRGGGGGGGGGGGGRERDRR 156
R R RRR + R R R RE + R RD RGGGGG G G D R
Sbjct: 355 RRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSR 411
Score = 37.4 bits (85), Expect = 0.006
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Query: 119 KHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
+ R R R RERR RSR+R + RER R RSRDR R R
Sbjct: 231 RDRDRDRERERRERSRERDK-----------ERERRRSRSRDRRRRSR 267
Score = 33.1 bits (74), Expect = 0.11
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 107 ELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSG 165
E R+ RR+ HRS R R R RDR R G ER R RD R G
Sbjct: 345 EKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRG--------ERGSERGRDEARGG 395
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 44.3 bits (103), Expect = 5e-05
Identities = 26/50 (52%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 115 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 164
RRR + RSRSRS RRSRS DR R GG R R++RR R R S
Sbjct: 571 RRRSRSRSRSRSTRRRSRSTDRRR------GGSRRSRSREKRRRRRRSAS 614
Score = 36.6 bits (83), Expect = 0.010
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 105 SRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSR 159
SR+ + + + RSRSRSR R +R R R GG RE+ RRR R
Sbjct: 557 SRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRR 611
Score = 36.6 bits (83), Expect = 0.010
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 114 GRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
G+ +K R RS + S SR++G GG R+RDR R RDR+RS +
Sbjct: 744 GKSSQKDRRRSGAASSSSSSREKG---SRRKALDGGDRDRDRDRDRDRDRSSK 793
Score = 33.9 bits (76), Expect = 0.067
Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 118 KKHRSRSR--------SRERRSRSRDRGRGGGGGGGG-----GGGGRERDRRRSRDRERS 164
KKHRSR R S RRSRSR R R GG R R R + R R RS
Sbjct: 553 KKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRS 612
Score = 30.4 bits (67), Expect = 0.74
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 105 SRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGG 144
S RRE R R KHR S++++ RSR RG G G
Sbjct: 622 SSSSRRE---RHRGKHRDGGGSKKKKKRSRSRGEKRSGDG 658
Score = 28.5 bits (62), Expect = 2.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 119 KHRSRSRSRERRSRSRDRGRGGGGGGGGGG 148
K ++ + + S++R + R GGG GG GG
Sbjct: 909 KKTKGTKGKTKPSKTRKKVRSGGGSGGSGG 938
Score = 27.3 bits (59), Expect = 6.2
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 106 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRR 157
R R+ G ++KK RSRSR +R ++ G +RD RR
Sbjct: 631 RGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPPPSGSTSCGDRDSRR 682
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 44.3 bits (103), Expect = 5e-05
Identities = 32/61 (52%), Positives = 35/61 (57%), Gaps = 14/61 (22%)
Query: 106 RELRRELYGRRRKKHRSRSRSRE--RRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
R+ RRE R R K RSRSR R+ RRSRSR+R R RER R RSRDR R
Sbjct: 45 RDRRRER-SRSRDKRRSRSRDRKRLRRSRSRERDR-----------SRERRRSRSRDRRR 92
Query: 164 S 164
S
Sbjct: 93 S 93
Score = 40.4 bits (93), Expect = 7e-04
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 106 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSG 165
R R R R++ RSRSR R RRSRSR RGR G + +R RS+++ G
Sbjct: 69 RRSRSRERDRSRERRRSRSRDR-RRSRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGG 127
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 102 KPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 161
K + R RE R R + R RSRSR+RR RSR R RG G ++ RSR +
Sbjct: 66 KRLRRSRSRE---RDRSRERRRSRSRDRR-RSRSRSRGRRSRSSSPGNKSKKTENRSRSK 121
Query: 162 ERS 164
E++
Sbjct: 122 EKT 124
Score = 38.9 bits (89), Expect = 0.002
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 14/62 (22%)
Query: 105 SRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 164
SR+ RR R++ RSRSR R+ RSR+R R R RDRRRSR R R
Sbjct: 54 SRDKRRSRSRDRKRLRRSRSRERD---RSRERRR-----------SRSRDRRRSRSRSRG 99
Query: 165 GR 166
R
Sbjct: 100 RR 101
Score = 37.0 bits (84), Expect = 0.008
Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 22/69 (31%)
Query: 105 SRELRRELYGRRRKKHRSRSRSR---------ERRSRSRDRGRGGGGGGGGGGGGRERDR 155
SR R+ R R RSRSRS +RRSRSRDR R R+R
Sbjct: 5 SRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDR-------------RRER 51
Query: 156 RRSRDRERS 164
RSRD+ RS
Sbjct: 52 SRSRDKRRS 60
Score = 35.0 bits (79), Expect = 0.030
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 114 GRRRKKHRSRSRSRERR-SRSRDRG---RGGGGGGGGGGGGRERDRRRSRDRERSGR 166
GR + +R RS SR R SRSR R + G R+RDRRR R R R R
Sbjct: 2 GRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKR 58
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 44.3 bits (103), Expect = 5e-05
Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 100 HLKPISRELRRELYGRRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRR-R 157
H + SRE R R RKK RSRSR R++ RSRSR+R + RER RR R
Sbjct: 66 HSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKK-------SRSRSRERKRRIR 118
Query: 158 SRDRERS 164
SR R RS
Sbjct: 119 SRSRSRS 125
Score = 42.4 bits (98), Expect = 2e-04
Identities = 26/50 (52%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 115 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 164
R RKK RSRSR R+RR RSR R R R R R RSR R RS
Sbjct: 101 RERKKSRSRSRERKRRIRSRSRSR-----------SRHRHRTRSRSRTRS 139
Score = 40.8 bits (94), Expect = 5e-04
Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 106 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
R R+E R + H SRSRSRERR RSR R R RER + RSR RER
Sbjct: 52 RHKRKERKSSRGRSH-SRSRSRERRHRSRSRER-----KKSRSRSRERKKSRSRSRER 103
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 44.3 bits (103), Expect = 5e-05
Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 100 HLKPISRELRRELYGRRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRR-R 157
H + SRE R R RKK RSRSR R++ RSRSR+R + RER RR R
Sbjct: 125 HSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKK-------SRSRSRERKRRIR 177
Query: 158 SRDRERS 164
SR R RS
Sbjct: 178 SRSRSRS 184
Score = 42.4 bits (98), Expect = 2e-04
Identities = 26/50 (52%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 115 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 164
R RKK RSRSR R+RR RSR R R R R R RSR R RS
Sbjct: 160 RERKKSRSRSRERKRRIRSRSRSR-----------SRHRHRTRSRSRTRS 198
Score = 40.8 bits (94), Expect = 5e-04
Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 106 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
R R+E R + H SRSRSRERR RSR R R RER + RSR RER
Sbjct: 111 RHKRKERKSSRGRSH-SRSRSRERRHRSRSRER-----KKSRSRSRERKKSRSRSRER 162
Score = 31.2 bits (69), Expect = 0.43
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 116 RRKKH---RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERS 164
R KH RSRSRSRER+ +S + GR G R + +S + +S
Sbjct: 34 RASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKS 85
Score = 30.4 bits (67), Expect = 0.74
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 84 QYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRE-RRSRSRDR 136
Q E+ R ++ + SRE +R+ RK HRSRSRS+E RR S+D+
Sbjct: 26 QSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRK-HRSRSRSKEGRRHESKDK 78
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 43.9 bits (102), Expect = 6e-05
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 71 LSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSR--- 127
LSP R + R + F + + + L RE R +++ RSRS R
Sbjct: 267 LSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLE 326
Query: 128 ERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
RRSRSR+R R G R+RDR R ++ ER R
Sbjct: 327 RRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRR 365
Score = 38.1 bits (87), Expect = 0.004
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 13/52 (25%)
Query: 115 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
++ KKH SRSRSRER+ RSR R R G R RSR +E+S +
Sbjct: 420 KKEKKH-SRSRSRERKHRSRSRSRNAG------------KRSRSRSKEKSSK 458
Score = 30.4 bits (67), Expect = 0.74
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 28/77 (36%)
Query: 116 RRKKHRSRSRS--RERRSRSRD-----------------RGRGGGGGGGGG--------- 147
R +KHRSRSRS +RSRSR R R G G
Sbjct: 431 RERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREH 490
Query: 148 GGGRERDRRRSRDRERS 164
+E+ R+RSR +ERS
Sbjct: 491 SPSKEKSRKRSRSKERS 507
Score = 28.5 bits (62), Expect = 2.8
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 114 GRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
G R+K R RSR R + RSR G ++D RR RD +R +
Sbjct: 375 GNEREKERERSRERSKEQRSR-------GEVEEKKHKEDKDDRRHRDDKRDSK 420
Score = 28.1 bits (61), Expect = 3.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 116 RRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSR 159
R ++ + RSRSR R + R R R +E+ +RSR
Sbjct: 429 RSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSR 472
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 43.5 bits (101), Expect = 8e-05
Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 26/154 (16%)
Query: 18 EKYGEVEEMNVC-DNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTD 76
EKYG V ++ + D G +V+F + DAE A+ ++ +G+ + +++
Sbjct: 35 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG- 93
Query: 77 FREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRR----RKKHRSRSRSRERRSR 132
R + RG P R YGRR R++ RSRSRSR R SR
Sbjct: 94 ------RPPDSHHSRRG---------PPPRRYGGGGYGRRSRSPRRRRRSRSRSRSR-SR 137
Query: 133 SRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
SR R R R R R RS + RS R
Sbjct: 138 SRSRSR----YSRSKSRSRTRSRSRSTSKSRSAR 167
>gi|224549005 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 42.4 bits (98), Expect = 2e-04
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 6 DEFFEEVFTEMEEKYGEVEEMNVCDNLG--DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 63
DE E E EKYG+V + + + G D ++++F R E A KAV+DLN R+F
Sbjct: 319 DEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 378
Query: 64 GQPIHAELSPVTDFR 78
G+ + A + FR
Sbjct: 379 GRVVKACFYNLDKFR 393
>gi|14249678 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 42.4 bits (98), Expect = 2e-04
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 6 DEFFEEVFTEMEEKYGEVEEMNVCDNLG--DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 63
DE E E EKYG+V + + + G D ++++F R E A KAV+DLN R+F
Sbjct: 319 DEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 378
Query: 64 GQPIHAELSPVTDFR 78
G+ + A + FR
Sbjct: 379 GRVVKACFYNLDKFR 393
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapiens]
Length = 1341
Score = 42.0 bits (97), Expect = 2e-04
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 102 KPISRELRRELYGRRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRD 160
K RE R+L +R++H SR R RER R R RDRG GRERDRR ++
Sbjct: 1265 KEAERERNRQLEREKRREH-SRERDRERERERERDRGDRDRDRERDRERGRERDRRDTKR 1323
Query: 161 RERS 164
RS
Sbjct: 1324 HSRS 1327
Score = 38.1 bits (87), Expect = 0.004
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 14/65 (21%)
Query: 102 KPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 161
+ + RE RRE + R R + R R R R+R R RDR R +R+R R RDR
Sbjct: 1273 RQLEREKRRE-HSRERDRERERERERDRGDRDRDRER-------------DRERGRERDR 1318
Query: 162 ERSGR 166
+ R
Sbjct: 1319 RDTKR 1323
Score = 32.0 bits (71), Expect = 0.25
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 110 RELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
RE + R ++ R R+R R RD+ R G R R RSRDR R R
Sbjct: 1143 REQWAEREREMERRERTRSEREWDRDKVREG-----------PRSRSRSRDRRRKER 1188
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 42.0 bits (97), Expect = 2e-04
Identities = 27/57 (47%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 114 GRRRKKHRSR---SRSRERRSRSRDRGRGGGGGGGGGGGGRE-RDRRRSRDRERSGR 166
GR R+ R R R ER + RGGGGGGGG GGGR R R R R GR
Sbjct: 10 GRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGR 66
Score = 28.1 bits (61), Expect = 3.7
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 129 RRSRSRDRG----RGGGGGGGGGGGGR 151
RR R R RG RGG GGGG G R
Sbjct: 50 RRGRGRGRGFRGARGGRGGGGAPRGSR 76
>gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Homo
sapiens]
Length = 155
Score = 42.0 bits (97), Expect = 2e-04
Identities = 24/46 (52%), Positives = 27/46 (58%), Gaps = 11/46 (23%)
Query: 116 RRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 161
RR++ RSRS SRER R R+R R RERDRRRSR R
Sbjct: 10 RRERRRSRSTSRERERRRRERSR-----------SRERDRRRSRSR 44
Score = 26.9 bits (58), Expect = 8.1
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 105 SRELRRELYGRRRKKHRSRSRSR-----ERRSRSRDRGRGGGGGGGGGGGGRERDRRRSR 159
SRE R R R + R R RSR RRSRS R R R+ +++ ++
Sbjct: 20 SRERERRRRERSRSRERDRRRSRSRSPHRRRSRSPRRHRSTSPSPSRLKERRDEEKKETK 79
Query: 160 DRERSGR 166
+ + R
Sbjct: 80 ETKSKER 86
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 41.6 bits (96), Expect = 3e-04
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 11/55 (20%)
Query: 109 RRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
R+E+ RR++ R R R RERR R R+R R RER++ + R+RER
Sbjct: 302 RQEIEKERRERERERERERERRERERERER-----------EREREKEKERERER 345
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 106 RELRRELYGRRRKKHRSRSRSRER-------RSRSRDRGRGGGGGGGGGGGGRERDRRRS 158
RE RE RR++ R R R RER R R RDR R R+RDR R
Sbjct: 312 RERERERERERREREREREREREREKEKERERERERDRDR-----DRTKERDRDRDRERD 366
Query: 159 RDRER 163
RDR+R
Sbjct: 367 RDRDR 371
Score = 36.2 bits (82), Expect = 0.013
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 115 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
R R+K R R R RER R R R+R R RER+R R R+RER
Sbjct: 383 RSREKSRDRERERERERERERERERE-----------RERERERERERER 421
Score = 35.4 bits (80), Expect = 0.023
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 115 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
R R + +SR R RER R R R+R R RER+R R R+RER
Sbjct: 381 RSRSREKSRDRERERERERERERERE-----------RERERERERERER 419
Score = 35.0 bits (79), Expect = 0.030
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 14/52 (26%)
Query: 115 RRRKKHRSRSRSRER---RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
R R + R R RS +R RSRSR++ R RER+R R R+RER
Sbjct: 363 RERDRDRDRERSSDRNKDRSRSREKSRD-----------RERERERERERER 403
Score = 34.3 bits (77), Expect = 0.051
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 12/50 (24%)
Query: 115 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
R + + RSR +SR+R R R R+R R RER+R R R+RER
Sbjct: 377 RNKDRSRSREKSRDRERERERERERE-----------RERERERERERER 415
Score = 34.3 bits (77), Expect = 0.051
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 15/59 (25%)
Query: 105 SRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
SRE R+ R R++ R R R RER R R+R R RER+R R R+RE+
Sbjct: 384 SREKSRD---RERERERERERERERE-RERERERE-----------REREREREREREK 427
Score = 33.5 bits (75), Expect = 0.087
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 115 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
R R R++ RSR R +SR R+R R RER+R R R+RER
Sbjct: 371 RERSSDRNKDRSRSREKSRDRERERE-----------RERERERERERER 409
Score = 33.5 bits (75), Expect = 0.087
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 12/50 (24%)
Query: 115 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
R +++ RSRSRE+ R R R+R R RER+R R R+RER
Sbjct: 373 RSSDRNKDRSRSREKSRDRERERERE-----------RERERERERERER 411
Score = 27.3 bits (59), Expect = 6.2
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 104 ISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
ISRE+ + ++ + + +ER+ ++R RER+R R R+RER
Sbjct: 277 ISREISKFRDTHKKLEEEKGKKEKERQEIEKER--------------RERERERERERER 322
Query: 164 SGR 166
R
Sbjct: 323 RER 325
>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
Length = 211
Score = 41.6 bits (96), Expect = 3e-04
Identities = 21/29 (72%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 138 RGGGGGGGGGGGGRE-RDRRRSRDRERSG 165
RGGGGG GGGGGGRE R R S R RSG
Sbjct: 26 RGGGGGAGGGGGGREKRGRPESPRRRRSG 54
Score = 31.6 bits (70), Expect = 0.33
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 111 ELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGG--GGGRERDRRRSRDRERS 164
++ GR ++ RS G GG GGGGGG GR RR R ER+
Sbjct: 2 QIAGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERA 57
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 41.6 bits (96), Expect = 3e-04
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 137 GRGGGGGGGGGGGGRERDRRRSRDRER 163
G GGGGGGGGGGGGR RD R +R
Sbjct: 218 GGGGGGGGGGGGGGRRRDSYYDRGYDR 244
Score = 37.4 bits (85), Expect = 0.006
Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 132 RSRDRGRGGGGGGGGGGGGRERDRRRSRDR 161
R G GGGGGGGGGGGG R R DR
Sbjct: 211 RPTHSGGGGGGGGGGGGGGGGRRRDSYYDR 240
Score = 37.0 bits (84), Expect = 0.008
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 111 ELYGRRRKKHRSRSRSRERRSRSRDRGR----GGGGGGGGGGGGRERDRRRSRDRER 163
EL GRR + S ++ + GR GGGGGGGGGGGG RRR +R
Sbjct: 184 ELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR 240
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 40.8 bits (94), Expect = 5e-04
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 127 RERRSRSRDRGRGGGGGGGGGGGG 150
R R R RGRGGGGGGGGGGGG
Sbjct: 34 RGRGGGFRGRGRGGGGGGGGGGGG 57
Score = 39.7 bits (91), Expect = 0.001
Identities = 21/44 (47%), Positives = 23/44 (52%)
Query: 123 RSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
R R R R R G GGGGGGGGG GG +R R R G+
Sbjct: 34 RGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGK 77
Score = 36.6 bits (83), Expect = 0.010
Identities = 19/41 (46%), Positives = 19/41 (46%)
Query: 121 RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 161
R R R R G GGGGGGG GGGG R R R
Sbjct: 34 RGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 137 GRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
G GGGGG GGGG +R R R +R +
Sbjct: 52 GGGGGGGRGGGGFHSGGNRGRGRGGKRGNQ 81
Score = 27.7 bits (60), Expect = 4.8
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 138 RGGGGGGGGGGGGRER 153
RGG GG GG GGGR R
Sbjct: 21 RGGRGGRGGFGGGRGR 36
Score = 27.3 bits (59), Expect = 6.2
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 135 DRGRGGGGGGGGGGGGR 151
DRG GG GG GGG GR
Sbjct: 20 DRGGRGGRGGFGGGRGR 36
Score = 26.9 bits (58), Expect = 8.1
Identities = 14/20 (70%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 137 GRGG-GGGGGGGGGGRERDR 155
GRGG GGG G GGG R R R
Sbjct: 26 GRGGFGGGRGRGGGFRGRGR 45
Score = 26.9 bits (58), Expect = 8.1
Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 6/20 (30%)
Query: 137 GRGGGGG------GGGGGGG 150
GRG GGG GGGGGGG
Sbjct: 33 GRGRGGGFRGRGRGGGGGGG 52
>gi|14670268 RD RNA-binding protein [Homo sapiens]
Length = 380
Score = 40.8 bits (94), Expect = 5e-04
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 115 RRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 167
R R + R R R RER R R RDR R R+RDR R RDR+R G F
Sbjct: 202 RERDRDRDRDRDRERDRDRDRDRDRDRE---------RDRDRERDRDRDREGPF 246
Score = 31.2 bits (69), Expect = 0.43
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 113 YGRRRKKHRSRSRSRER-RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRER 163
Y R H S S R R R RS +R R R+RDR R RDR+R
Sbjct: 170 YEERSGAHSSASPPRSRSRDRSHERNRD-----------RDRDRERDRDRDR 210
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 40.8 bits (94), Expect = 5e-04
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
Query: 10 EEVFTEMEEKYGEVEEMNVC-DNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 68
E E+ KYG + ++++ D G +V F +DA++A N +G+ I
Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190
Query: 69 AELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRE 128
+ S +T MG T G RR+ Y R + R+
Sbjct: 191 VDFS-ITKRPHTPTPGIYMGRPTYGS------------SRRRDYYDRGYDRGYD---DRD 234
Query: 129 RRSRSRDRGRGGGGGGGGGGGGRERD---RRRS 158
SRS RGGGGGGGG ++RD RRRS
Sbjct: 235 YYSRSY---RGGGGGGGGWRAAQDRDQIYRRRS 264
Score = 30.8 bits (68), Expect = 0.56
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 100 HLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSR 159
H SR R + + RS SRSR RRS R R R R RRSR
Sbjct: 32 HTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTR---------SRSRSRSHRRSR 82
Query: 160 DRERS 164
R S
Sbjct: 83 SRSYS 87
Score = 30.4 bits (67), Expect = 0.74
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 116 RRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 161
R RSRS+ RRSRS+ R R R R RSR R
Sbjct: 31 RHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSR 76
Score = 29.6 bits (65), Expect = 1.3
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 114 GRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
G+ + +RSRS+E RSR + R R RSR R RS R
Sbjct: 27 GKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHR 79
Score = 29.3 bits (64), Expect = 1.6
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 102 KPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 161
K SR R + R + RSR SR +RSR R R R R R SRD
Sbjct: 40 KEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSR---------SHRRSRSRSYSRDY 90
Query: 162 ER 163
R
Sbjct: 91 RR 92
>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
sapiens]
Length = 1386
Score = 40.8 bits (94), Expect = 5e-04
Identities = 20/40 (50%), Positives = 22/40 (55%)
Query: 114 GRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRER 153
G+ K SR R S+ G GGGGGGGGGGGG R
Sbjct: 12 GKGGGKGSSRGGRGGRSHASKSHGSGGGGGGGGGGGGGNR 51
Score = 40.0 bits (92), Expect = 0.001
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 114 GRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRR 156
G + R R S+S G GGGGGGGGGGG R+ R
Sbjct: 14 GGGKGSSRGGRGGRSHASKSHGSGGGGGGGGGGGGGNRKASSR 56
Score = 32.0 bits (71), Expect = 0.25
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 104 ISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDR 161
+S +RR+ G+ K S R RS G GGGGGGGGG R++ R
Sbjct: 1 MSSSVRRK--GKPGKGGGKGSSRGGRGGRSHASKSHGSGGGGGGGGGGGGGNRKASSR 56
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 40.4 bits (93), Expect = 7e-04
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 18/72 (25%)
Query: 102 KPISRELRRELYGRRRKKHRSR------SRSRE-RRSRSRDRGRGGGGGGGGGGGGRERD 154
K +R+ R R R +H SR SRSR+ +RSRSR+R R R RD
Sbjct: 281 KERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRS-----------RSRD 329
Query: 155 RRRSRDRERSGR 166
RRRSR +RS R
Sbjct: 330 RRRSRSHDRSER 341
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 106 RELRRELYGRRRKKH-----RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRD 160
RE RE R+R++ + R+R RERR RSR R R R RD +RSR
Sbjct: 261 REREREERERKRRREEEEREKERARDRERRKRSRSRSR-HSSRTSDRRCSRSRDHKRSRS 319
Query: 161 RER 163
RER
Sbjct: 320 RER 322
Score = 36.6 bits (83), Expect = 0.010
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 106 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRR--RSRDRER 163
RE +R R+K R+R R R +RSRSR R R DRR RSRD +R
Sbjct: 268 RERKRRREEEEREKERARDRERRKRSRSRSRH-----------SSRTSDRRCSRSRDHKR 316
Query: 164 S 164
S
Sbjct: 317 S 317
Score = 35.8 bits (81), Expect = 0.018
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 19/71 (26%)
Query: 100 HLKPISRELRRELYGRRRKKHRSRSRS-RERRSRSRDRGRGGGGGGGGGGGGRERDRR-- 156
H + SRE RR R R++ RS RS R+ RSRSRDR R + RDR+
Sbjct: 314 HKRSRSRERRRSR-SRDRRRSRSHDRSERKHRSRSRDRRR-----------SKSRDRKSY 361
Query: 157 ----RSRDRER 163
+SRDRE+
Sbjct: 362 KHRSKSRDREQ 372
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 115 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
++ ++ R + R RER R R R R ER++ R+RDRER R
Sbjct: 251 KQEREEREKEREREREERERKRRREE----------EEREKERARDRERRKR 292
Score = 29.3 bits (64), Expect = 1.6
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 105 SRELRR-ELYGRRRKKHRSRSRSRERRSRSRDRGRGG 140
SR+ RR + R+ KHRS+SR RE+ +S+++ + G
Sbjct: 347 SRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRG 383
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 40.4 bits (93), Expect = 7e-04
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 18/72 (25%)
Query: 102 KPISRELRRELYGRRRKKHRSR------SRSRE-RRSRSRDRGRGGGGGGGGGGGGRERD 154
K +R+ R R R +H SR SRSR+ +RSRSR+R R R RD
Sbjct: 281 KERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRS-----------RSRD 329
Query: 155 RRRSRDRERSGR 166
RRRSR +RS R
Sbjct: 330 RRRSRSHDRSER 341
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 106 RELRRELYGRRRKKH-----RSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRD 160
RE RE R+R++ + R+R RERR RSR R R R RD +RSR
Sbjct: 261 REREREERERKRRREEEEREKERARDRERRKRSRSRSR-HSSRTSDRRCSRSRDHKRSRS 319
Query: 161 RER 163
RER
Sbjct: 320 RER 322
Score = 36.6 bits (83), Expect = 0.010
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 106 RELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRR--RSRDRER 163
RE +R R+K R+R R R +RSRSR R R DRR RSRD +R
Sbjct: 268 RERKRRREEEEREKERARDRERRKRSRSRSRH-----------SSRTSDRRCSRSRDHKR 316
Query: 164 S 164
S
Sbjct: 317 S 317
Score = 35.8 bits (81), Expect = 0.018
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 19/71 (26%)
Query: 100 HLKPISRELRRELYGRRRKKHRSRSRS-RERRSRSRDRGRGGGGGGGGGGGGRERDRR-- 156
H + SRE RR R R++ RS RS R+ RSRSRDR R + RDR+
Sbjct: 314 HKRSRSRERRRSR-SRDRRRSRSHDRSERKHRSRSRDRRR-----------SKSRDRKSY 361
Query: 157 ----RSRDRER 163
+SRDRE+
Sbjct: 362 KHRSKSRDREQ 372
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 115 RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGR 166
++ ++ R + R RER R R R R ER++ R+RDRER R
Sbjct: 251 KQEREEREKEREREREERERKRRREE----------EEREKERARDRERRKR 292
Score = 29.3 bits (64), Expect = 1.6
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 105 SRELRR-ELYGRRRKKHRSRSRSRERRSRSRDRGRGG 140
SR+ RR + R+ KHRS+SR RE+ +S+++ + G
Sbjct: 347 SRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRG 383
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 39.7 bits (91), Expect = 0.001
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 115 RRRKKHRSRSRSRER-------RSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 167
++RKK +SRSRS ER R RSRDR R R ++RRRSR R R RF
Sbjct: 33 KKRKKSKSRSRSHERKRSKSKERKRSRDRER-KKSKSRERKRSRSKERRRSRSRSRDRRF 91
Score = 32.3 bits (72), Expect = 0.19
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 102 KPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGR-------ERD 154
K SRE +R R +++ RSRSRSR+RR R R R G G+ +
Sbjct: 65 KSKSRERKRS---RSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLS 121
Query: 155 RRRSRDR 161
RRRSR +
Sbjct: 122 RRRSRSK 128
Score = 30.4 bits (67), Expect = 0.74
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 10 EEVFTEMEEKYGEVEEMNVCDNLGDHLV------GNVYVKFRREEDAEKAVIDLNNRWFN 63
EEV + E K +EE N + V GNVYVK A AV L+ RWF
Sbjct: 432 EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 491
Query: 64 GQPIHAELSPVTDF 77
G+ I A P+ +
Sbjct: 492 GKMITAAYVPLPTY 505
Score = 29.3 bits (64), Expect = 1.6
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Query: 105 SRELRRELYGRRRK---KHRSRSRSRERR---SRSRDR 136
S+E +R R+K + R RSRS+ERR SRSRDR
Sbjct: 52 SKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDR 89
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,245,097
Number of Sequences: 37866
Number of extensions: 386058
Number of successful extensions: 15956
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 6450
Number of HSP's gapped (non-prelim): 5614
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.