Guide to the Human Genome
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Name: SNRNP27 Sequence: fasta or formatted (155aa) NCBI GI: 24307919
Description:

small nuclear ribonucleoprotein 27kDa (U4/U6.U5)

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6          4           1
 C cysteine            0.0          0           0
 D aspartate           3.9          6           1
 E glutamate          11.6         18           3
 F phenylalanine       2.6          4           1
 G glycine             4.5          7           2
 H histidine           1.3          2           1
 I isoleucine          2.6          4           1
 K lysine              9.0         14           2
 L leucine             2.6          4           1
 M methionine          3.2          5           2
 N asparagine          2.6          4           1
 P proline             3.9          6           1
 Q glutamine           1.9          3           1
 R arginine           25.2         39           4
 S serine             14.2         22           1
 T threonine           4.5          7           1
 V valine              1.9          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho... 
DDX46                 0.192   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
PRPF38B               0.178   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
SRRM2                 0.178   splicing coactivator subunit SRm300 
SFRS11                0.174   splicing factor, arginine/serine-rich 11 
SFRS12                0.174   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.174   splicing factor, arginine/serine-rich 12 isoform b [...
RSRC2                 0.167   arginine/serine-rich coiled-coil 2 isoform b 
RSRC2                 0.167   arginine/serine-rich coiled-coil 2 isoform a 
SFRS4                 0.160   splicing factor, arginine/serine-rich 4 
LUC7L2                0.157   LUC7-like 2 
LOC100286959          0.157   PREDICTED: hypothetical protein XP_002343921 
LOC100131202          0.153   PREDICTED: hypothetical protein 
RBM16                 0.149   RNA-binding motif protein 16 
LOC100134067          0.149   PREDICTED: hypothetical protein 
RBM25                 0.142   RNA binding motif protein 25 
SFRS2                 0.142   splicing factor, arginine/serine-rich 2 
LOC100131202          0.142   PREDICTED: hypothetical protein 
LOC100170229          0.142   hypothetical protein LOC100170229 
ARGLU1                0.142   arginine and glutamate rich 1 
ZC3H13                0.139   zinc finger CCCH-type containing 13 
CROP                  0.139   cisplatin resistance-associated overexpressed protei...
CROP                  0.139   cisplatin resistance-associated overexpressed protei...
LUC7L                 0.135   LUC7-like isoform b 
PRPF38A               0.135   PRP38 pre-mRNA processing factor 38 (yeast) domain c...
LOC100288837          0.132   PREDICTED: hypothetical protein XP_002343931, parti...
SFRS6                 0.132   arginine/serine-rich splicing factor 6 
DDX23                 0.132   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DHX8                  0.132   DEAH (Asp-Glu-Ala-His) box polypeptide 8 
SFRS18                0.128   splicing factor, arginine/serine-rich 130 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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