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Search of human proteins with 68448544
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68448544 CD74 antigen isoform a [Homo sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68448544 CD74 antigen isoform a [Homo sapiens] 623 e-179
gi|10835071 CD74 antigen isoform b [Homo sapiens] 431 e-121
gi|68448537 CD74 antigen isoform c [Homo sapiens] 298 4e-81
gi|144953895 nidogen 2 precursor [Homo sapiens] 71 1e-12
gi|115298674 nidogen 1 precursor [Homo sapiens] 68 1e-11
gi|4759164 sparc/osteonectin, cwcv and kazal-like domains proteo... 61 1e-09
gi|93141003 testican 3 isoform 1 [Homo sapiens] 61 1e-09
gi|93141001 testican 3 isoform 2 [Homo sapiens] 61 1e-09
gi|7662036 sparc/osteonectin, cwcv and kazal-like domains proteo... 56 3e-08
gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens] 49 4e-06
gi|55770862 thyroglobulin [Homo sapiens] 46 3e-05
gi|78190498 secreted modular calcium-binding protein 1 isoform 1... 46 4e-05
gi|11545873 secreted modular calcium-binding protein 1 isoform 2... 46 4e-05
gi|4504615 insulin-like growth factor binding protein 1 precurso... 42 5e-04
gi|55925576 insulin-like growth factor binding protein 2, 36kDa ... 39 0.005
gi|62243290 insulin-like growth factor binding protein 4 precurs... 38 0.009
gi|62243068 insulin-like growth factor binding protein 3 isoform... 35 0.10
gi|62243248 insulin-like growth factor binding protein 3 isoform... 35 0.10
gi|218505670 epithelial cell adhesion molecule precursor [Homo s... 34 0.13
gi|10834982 insulin-like growth factor binding protein 5 [Homo s... 32 0.67
gi|11321593 insulin-like growth factor binding protein 6 [Homo s... 32 0.87
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 32 0.87
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 32 0.87
gi|7706113 protocadherin 12 precursor [Homo sapiens] 31 1.5
gi|189027090 cytoplasmic polyadenylation element binding protein... 30 1.9
gi|88703045 proline rich 11 [Homo sapiens] 30 1.9
gi|110611228 utrophin [Homo sapiens] 30 2.5
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 29 5.7
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 29 5.7
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 29 5.7
>gi|68448544 CD74 antigen isoform a [Homo sapiens]
Length = 296
Score = 623 bits (1607), Expect = e-179
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
Sbjct: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
Query: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
Sbjct: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
Query: 121 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV 180
GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV
Sbjct: 121 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV 180
Query: 181 FESWMHHWLLFEMSRHSLEQKPTDAPPKVLTKCQEEVSHIPAVHPGSFRPKCDENGNYLP 240
FESWMHHWLLFEMSRHSLEQKPTDAPPKVLTKCQEEVSHIPAVHPGSFRPKCDENGNYLP
Sbjct: 181 FESWMHHWLLFEMSRHSLEQKPTDAPPKVLTKCQEEVSHIPAVHPGSFRPKCDENGNYLP 240
Query: 241 LQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSESLELEDPSSGLGVTKQDLGPVPM 296
LQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSESLELEDPSSGLGVTKQDLGPVPM
Sbjct: 241 LQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSESLELEDPSSGLGVTKQDLGPVPM 296
>gi|10835071 CD74 antigen isoform b [Homo sapiens]
Length = 232
Score = 431 bits (1107), Expect = e-121
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
Sbjct: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
Query: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
Sbjct: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
Query: 121 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV 180
GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV
Sbjct: 121 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV 180
Query: 181 FESWMHHWLLFEMSRHSLEQKPTDAPPK 208
FESWMHHWLLFEMSRHSLEQKPTDAPPK
Sbjct: 181 FESWMHHWLLFEMSRHSLEQKPTDAPPK 208
Score = 51.6 bits (122), Expect = 8e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Query: 273 ESLELEDPSSGLGVTKQDLGPVPM 296
ESLELEDPSSGLGVTKQDLGPVPM
Sbjct: 209 ESLELEDPSSGLGVTKQDLGPVPM 232
>gi|68448537 CD74 antigen isoform c [Homo sapiens]
Length = 160
Score = 298 bits (763), Expect = 4e-81
Identities = 147/148 (99%), Positives = 148/148 (100%)
Query: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
Sbjct: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
Query: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
Sbjct: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
Query: 121 GALPQGPMQNATKYGNMTEDHVMHLLQN 148
GALPQGPMQNATKYGNMTEDHVMHLLQ+
Sbjct: 121 GALPQGPMQNATKYGNMTEDHVMHLLQS 148
>gi|144953895 nidogen 2 precursor [Homo sapiens]
Length = 1375
Score = 71.2 bits (173), Expect = 1e-12
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 4/60 (6%)
Query: 210 LTKCQEEVSHIPA--VHPGS--FRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRS 265
LT C+++ H A +PG+ P+CDE GN+LPLQC+GS G+CWCV P+G EVP T++
Sbjct: 937 LTPCEQQQRHAQAQYAYPGARFHIPQCDEQGNFLPLQCHGSTGFCWCVDPDGHEVPGTQT 996
Score = 57.8 bits (138), Expect = 1e-08
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 201 KPTDAPPKVLTKCQEEVSHIPAVHP--GSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGT 258
+PT PP + + +E + P + P+CD+ G+++PLQC+G +CWCV +G
Sbjct: 1010 EPTQRPPTICERWRENLLEHYGGTPRDDQYVPQCDDLGHFIPLQCHGKSDFCWCVDKDGR 1069
Query: 259 EVPNTRSR 266
EV TRS+
Sbjct: 1070 EVQGTRSQ 1077
>gi|115298674 nidogen 1 precursor [Homo sapiens]
Length = 1247
Score = 67.8 bits (164), Expect = 1e-11
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 211 TKCQEEVSHIPA----------VHPGSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEV 260
T+CQ E HI + PG F P+CD +G+Y P QC+GS GYCWCV +G EV
Sbjct: 847 TRCQHEREHILGAAGATDPQRPIPPGLFVPECDAHGHYAPTQCHGSTGYCWCVDRDGREV 906
Query: 261 PNTRSR 266
TR+R
Sbjct: 907 EGTRTR 912
>gi|4759164 sparc/osteonectin, cwcv and kazal-like domains
proteoglycan 1 precursor [Homo sapiens]
Length = 439
Score = 60.8 bits (146), Expect = 1e-09
Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Query: 200 QKPTDAPPKVLTKCQEEVSHIPAVHPG-----SFRPKCDENGNYLPLQCYGSIGYCWCVF 254
QKP P CQ E++ I + G +F P+C+E G Y QC+GS G CWCV
Sbjct: 306 QKPGGLP------CQNEMNRIQKLSKGKSLLGAFIPRCNEEGYYKATQCHGSTGQCWCVD 359
Query: 255 PNGTEVPNTRSRGHHNCSESLELE-DPSSGLGVT-------KQDLGP 293
G E+ +R +G +C E E D SG V +++LGP
Sbjct: 360 KYGNELAGSRKQGAVSCEEEQETSGDFGSGGSVVLLDDLEYERELGP 406
>gi|93141003 testican 3 isoform 1 [Homo sapiens]
Length = 433
Score = 60.8 bits (146), Expect = 1e-09
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 213 CQEEVSHIPAVHP-----GSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRG 267
CQ E+S+I G + P CDE+G Y P QC+GS+G CWCV G EV +R G
Sbjct: 314 CQTELSNIQKRQGVKKLLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVMGSRING 373
Query: 268 HHNCSESLELE-DPSSG 283
+C+ E+ D +SG
Sbjct: 374 VADCAIDFEISGDFASG 390
>gi|93141001 testican 3 isoform 2 [Homo sapiens]
Length = 436
Score = 60.8 bits (146), Expect = 1e-09
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 213 CQEEVSHIPAVHP-----GSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRG 267
CQ E+S+I G + P CDE+G Y P QC+GS+G CWCV G EV +R G
Sbjct: 317 CQTELSNIQKRQGVKKLLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVMGSRING 376
Query: 268 HHNCSESLELE-DPSSG 283
+C+ E+ D +SG
Sbjct: 377 VADCAIDFEISGDFASG 393
>gi|7662036 sparc/osteonectin, cwcv and kazal-like domains
proteoglycan (testican) 2 isoform 2 [Homo sapiens]
Length = 424
Score = 56.2 bits (134), Expect = 3e-08
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 204 DAPPKVLTKCQEEVSHIPAVHPGSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNT 263
+ PP + + ++ PG F P CDE+G Y +QC S G CWCV G E+ T
Sbjct: 309 EKPPCLAELERIQIQEAAKKKPGIFIPSCDEDGYYRKMQCDQSSGDCWCVDQLGLELTGT 368
Query: 264 RSRGHHNCSESLELE-DPSSGLG 285
R+ G +C + + D SG+G
Sbjct: 369 RTHGSPDCDDIVGFSGDFGSGVG 391
>gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens]
Length = 457
Score = 49.3 bits (116), Expect = 4e-06
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 228 FRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNT 263
F P+C+++G Y +QC+ GYCWCV PNG + T
Sbjct: 109 FIPECNDDGTYSQVQCHSYTGYCWCVTPNGRPISGT 144
Score = 45.1 bits (105), Expect = 8e-05
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 230 PKCDENGNYLPLQCYGSIGYCWCVF-PNGTEVPNTRSR 266
P+C G Y P+QC+ S GYCWCV G +P T +R
Sbjct: 249 PECAHGGLYKPVQCHPSTGYCWCVLVDTGRPIPGTSTR 286
>gi|55770862 thyroglobulin [Homo sapiens]
Length = 2768
Score = 46.2 bits (108), Expect = 3e-05
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 223 VHPGSFRPKCD-ENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSES 274
V PG + P C E+G + P+QC + G CWCV +G EVP TR G ES
Sbjct: 1161 VSPG-YVPACRAEDGGFSPVQCDQAQGSCWCVMDSGEEVPGTRVTGGQPACES 1212
Score = 45.8 bits (107), Expect = 4e-05
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 227 SFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGH-HNCSESLELED 279
S+ P+C ++G+Y P+QC CWCV G EV TR G C S E+ +
Sbjct: 115 SYLPQCQDSGDYAPVQCDVQQVQCWCVDAEGMEVYGTRQLGRPKRCPRSCEIRN 168
Score = 45.8 bits (107), Expect = 4e-05
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 226 GSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNT---RSRGHHNCSESLELEDPSS 282
G + P+CD G++ P+QC+ G+CWCV G +P + RS C + E S
Sbjct: 1025 GPYMPQCDAFGSWEPVQCHAGTGHCWCVDEKGGFIPGSLTARSLQIPQCPTTCEKSRTSG 1084
Query: 283 GLGVTKQ 289
L KQ
Sbjct: 1085 LLSSWKQ 1091
Score = 42.4 bits (98), Expect = 5e-04
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 211 TKCQ-EEVSHIPAVHPGSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGH- 268
TKC+ E + HP + P C NG+Y +QC G CWCV G E+ TR +G
Sbjct: 299 TKCEVERFTATSFGHP--YVPSCRRNGDYQAVQCQTE-GPCWCVDAQGKEMHGTRQQGEP 355
Query: 269 HNCSE 273
+C+E
Sbjct: 356 PSCAE 360
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 204 DAPPKVLTKCQEEVSHIPAVHPGSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNT 263
DA P + Q E + + + P+C E+G++ +QC CWCV NG+EV +
Sbjct: 27 DAQPLRPCELQRETAFLKQA---DYVPQCAEDGSFQTVQCQNDGRSCWCVGANGSEVLGS 83
Query: 264 RSRG 267
R G
Sbjct: 84 RQPG 87
Score = 41.2 bits (95), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 207 PKVLTKCQEEVSHIPAVHPGS------FRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEV 260
P+ T C+++ + + ++ F P C G++LP+QC+ S C+CV G +
Sbjct: 656 PRCPTDCEKQRARMQSLMGSQPAGSTLFVPACTSEGHFLPVQCFNS--ECYCVDAEGQAI 713
Query: 261 PNTRS 265
P TRS
Sbjct: 714 PGTRS 718
Score = 40.8 bits (94), Expect = 0.001
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 228 FRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRG 267
F P C G+Y +QC+ G CWCV G E+P +R RG
Sbjct: 616 FVPSCTTEGSYEDVQCFS--GECWCVNSWGKELPGSRVRG 653
>gi|78190498 secreted modular calcium-binding protein 1 isoform 1
[Homo sapiens]
Length = 435
Score = 45.8 bits (107), Expect = 4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 228 FRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGHHN-CSESLELEDPSSGLGV 286
F P+C E+G++ +QC+ GYCWCV P+G + + + CS S+ + S G
Sbjct: 114 FVPECGEDGSFTQVQCHTYTGYCWCVTPDGKPISGSSVQNKTPVCSGSVTDKPLSQGNSG 173
Query: 287 TKQD 290
K D
Sbjct: 174 RKDD 177
Score = 43.9 bits (102), Expect = 2e-04
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 230 PKCDENGNYLPLQCYGSIGYCWCVF-PNGTEVPNTRSR 266
P+C G Y P+QC+ S GYCWCV G +P T +R
Sbjct: 249 PECAPGGLYKPVQCHQSTGYCWCVLVDTGRPLPGTSTR 286
>gi|11545873 secreted modular calcium-binding protein 1 isoform 2
[Homo sapiens]
Length = 434
Score = 45.8 bits (107), Expect = 4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 228 FRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGHHN-CSESLELEDPSSGLGV 286
F P+C E+G++ +QC+ GYCWCV P+G + + + CS S+ + S G
Sbjct: 114 FVPECGEDGSFTQVQCHTYTGYCWCVTPDGKPISGSSVQNKTPVCSGSVTDKPLSQGNSG 173
Query: 287 TKQD 290
K D
Sbjct: 174 RKDD 177
Score = 43.9 bits (102), Expect = 2e-04
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 230 PKCDENGNYLPLQCYGSIGYCWCVF-PNGTEVPNTRSR 266
P+C G Y P+QC+ S GYCWCV G +P T +R
Sbjct: 249 PECAPGGLYKPVQCHQSTGYCWCVLVDTGRPLPGTSTR 286
>gi|4504615 insulin-like growth factor binding protein 1 precursor
[Homo sapiens]
Length = 259
Score = 42.4 bits (98), Expect = 5e-04
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 228 FRPKCDENGNYLPLQCY----GSIGYCWCVFP-NGTEVPNT-RSRGHHNC 271
+ P C++NG Y QC G G CWCV+P NG +P + RG NC
Sbjct: 202 YLPNCNKNGFYHSRQCETSMDGEAGLCWCVYPWNGKRIPGSPEIRGDPNC 251
>gi|55925576 insulin-like growth factor binding protein 2, 36kDa
[Homo sapiens]
Length = 328
Score = 38.9 bits (89), Expect = 0.005
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 198 LEQKPTDAPPKVLTKCQEEVSHI--------------PAVHPGSFR-PKCDENGNYLPLQ 242
LE+ PP T CQ+E+ + P H S P CD++G Y Q
Sbjct: 215 LEEPKKLRPPPARTPCQQELDQVLERISTMRLPDERGPLEHLYSLHIPNCDKHGLYNLKQ 274
Query: 243 CYGSI----GYCWCVFPN 256
C S+ G CWCV PN
Sbjct: 275 CKMSLNGQRGECWCVNPN 292
>gi|62243290 insulin-like growth factor binding protein 4 precursor
[Homo sapiens]
Length = 258
Score = 38.1 bits (87), Expect = 0.009
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 230 PKCDENGNYLPLQCY----GSIGYCWCV-FPNGTEVP-NTRSRGHHNCSE 273
P CD NGN+ P QC+ G G CWCV G ++P +G +C +
Sbjct: 202 PNCDRNGNFHPKQCHPALDGQRGKCWCVDRKTGVKLPGGLEPKGELDCHQ 251
>gi|62243068 insulin-like growth factor binding protein 3 isoform b
precursor [Homo sapiens]
Length = 291
Score = 34.7 bits (78), Expect = 0.10
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 230 PKCDENGNYLPLQCYGSIG----YCWCVFPNGTEVPNTRSRG 267
P CD+ G Y QC S G +CWCV G +P ++G
Sbjct: 238 PNCDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQPLPGYTTKG 279
>gi|62243248 insulin-like growth factor binding protein 3 isoform a
precursor [Homo sapiens]
Length = 297
Score = 34.7 bits (78), Expect = 0.10
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 230 PKCDENGNYLPLQCYGSIG----YCWCVFPNGTEVPNTRSRG 267
P CD+ G Y QC S G +CWCV G +P ++G
Sbjct: 244 PNCDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQPLPGYTTKG 285
>gi|218505670 epithelial cell adhesion molecule precursor [Homo
sapiens]
Length = 314
Score = 34.3 bits (77), Expect = 0.13
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 226 GSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSE 273
G + P CDE+G + QC G+ CWCV N V T CSE
Sbjct: 93 GLYDPDCDESGLFKAKQCNGT-SMCWCV--NTAGVRRTDKDTEITCSE 137
>gi|10834982 insulin-like growth factor binding protein 5 [Homo
sapiens]
Length = 272
Score = 32.0 bits (71), Expect = 0.67
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 215 EEVSHIPAVHPGS-FRPKCDENGNYLPLQCYGSIG----YCWCVFPNGTEVP 261
+E+ P + P + + P CD G Y QC S G CWCV G ++P
Sbjct: 201 QELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLP 252
>gi|11321593 insulin-like growth factor binding protein 6 [Homo
sapiens]
Length = 240
Score = 31.6 bits (70), Expect = 0.87
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 230 PKCDENGNYLPLQCYGSIGY----CWCVFPNGTEVPNT 263
P CD G Y QC S G CWCV G +P +
Sbjct: 188 PNCDHRGFYRKRQCRSSQGQRRGPCWCVDRMGKSLPGS 225
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 31.6 bits (70), Expect = 0.87
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 89 QLENLRMKLPKPPKPVSKM------RMATPLLMQALPMGALPQGPMQNATKYGNMTEDHV 142
QL+ +RM+ P P P + R A P ++Q P + MQ + H
Sbjct: 530 QLQQMRMQQPPAPVPTTTTTTQQHPRQAAPQMLQQQPPRLISVQTMQRGNMNCGAFQAHQ 589
Query: 143 MHLLQNADPLKVYPPLKG 160
M L QNA + P G
Sbjct: 590 MRLAQNAARIPGIPRHSG 607
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 31.6 bits (70), Expect = 0.87
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 89 QLENLRMKLPKPPKPVSKM------RMATPLLMQALPMGALPQGPMQNATKYGNMTEDHV 142
QL+ +RM+ P P P + R A P ++Q P + MQ + H
Sbjct: 530 QLQQMRMQQPPAPVPTTTTTTQQHPRQAAPQMLQQQPPRLISVQTMQRGNMNCGAFQAHQ 589
Query: 143 MHLLQNADPLKVYPPLKG 160
M L QNA + P G
Sbjct: 590 MRLAQNAARIPGIPRHSG 607
>gi|7706113 protocadherin 12 precursor [Homo sapiens]
Length = 1184
Score = 30.8 bits (68), Expect = 1.5
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 37/205 (18%)
Query: 86 QNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDHVMHL 145
+N ENL + P+P + R PL + P G L
Sbjct: 856 RNASRENLNLPEPQPATGQPRSR---PLKVAGSPTGRLAGD------------------- 893
Query: 146 LQNADPLKVYPPLKGSFPENLRHLKNTM----ETIDWKVFESWMHHWLLFEMSRHSLEQK 201
Q ++ PP + RHL + E+ ++ S + + R+ +E+
Sbjct: 894 -QGSEEAPQRPPASSATLRRQRHLNGKVSPEKESGPRQILRSLVRLSVAAFAERNPVEEL 952
Query: 202 PTDAPPKVLTKCQEEVSHIPAVHPGSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVP 261
D+PP Q+ + +H G F+PK + GN + GS P+ T+ P
Sbjct: 953 TVDSPP-----VQQISQLLSLLHQGQFQPKPNHRGNKYLAKPGGSRS----AIPD-TDGP 1002
Query: 262 NTRSRGHHNCSESLELEDPSSGLGV 286
+ R+ G + + DP L V
Sbjct: 1003 SARAGGQTDPEQEEGPLDPEEDLSV 1027
>gi|189027090 cytoplasmic polyadenylation element binding protein 4
[Homo sapiens]
Length = 729
Score = 30.4 bits (67), Expect = 1.9
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 89 QLENLRMKLPKPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDHVMHLLQN 148
QL +L L KPP P S + +P + G G G+ DH L
Sbjct: 270 QLPHLANNLNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWG-----GSQGRDHRRGLNGG 324
Query: 149 ADPLKVYPPLKGSFPENLRHLKNTMETIDWKVFESWM 185
PL PLK +F N L+ +SWM
Sbjct: 325 ITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSWM 361
>gi|88703045 proline rich 11 [Homo sapiens]
Length = 360
Score = 30.4 bits (67), Expect = 1.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 97 LPKPPKPVSKMRMATPLLMQALPMGALPQ-GPMQNATK 133
LP PP P++ + + P L +AL G L + GPMQ K
Sbjct: 193 LPPPPPPLAPVLLRKPSLAKALQAGPLKKDGPMQITVK 230
>gi|110611228 utrophin [Homo sapiens]
Length = 3433
Score = 30.0 bits (66), Expect = 2.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 179 KVFESWMHHWLLFEMSRHSLEQKPTDAPPKVLTKCQEEVSHIPAVHP 225
K E W+ H + E SR SL P + CQ E++++ +HP
Sbjct: 815 KTKEEWVKHTSISESSRQSL--------PSLKDSCQRELTNLLGLHP 853
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 28.9 bits (63), Expect = 5.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 87 NLQLENLRMKLP-KPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDH 141
+L+LE+LR ++P +PP P+ + + L LP A P Q G H
Sbjct: 576 HLELESLRERVPCEPPPPLPPLLLGVSLPPFGLPTSASEPDPAQRVQSTGVYRHRH 631
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 28.9 bits (63), Expect = 5.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 87 NLQLENLRMKLP-KPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDH 141
+L+LE+LR ++P +PP P+ + + L LP A P Q G H
Sbjct: 249 HLELESLRERVPCEPPPPLPPLLLGVSLPPFGLPTSASEPDPAQRVQSTGVYRHRH 304
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 28.9 bits (63), Expect = 5.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 87 NLQLENLRMKLP-KPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDH 141
+L+LE+LR ++P +PP P+ + + L LP A P Q G H
Sbjct: 249 HLELESLRERVPCEPPPPLPPLLLGVSLPPFGLPTSASEPDPAQRVQSTGVYRHRH 304
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,636,167
Number of Sequences: 37866
Number of extensions: 670461
Number of successful extensions: 1757
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1711
Number of HSP's gapped (non-prelim): 54
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.