Guide to the Human Genome
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Name: PRR11 Sequence: fasta or formatted (360aa) NCBI GI: 88703045
Description:

proline rich 11

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         15           1
 C cysteine            2.5          9           1
 D aspartate           3.1         11           1
 E glutamate           3.6         13           1
 F phenylalanine       2.8         10           1
 G glycine             3.1         11           2
 H histidine           1.7          6           1
 I isoleucine          4.4         16           1
 K lysine              9.7         35           3
 L leucine            11.7         42           2
 M methionine          1.7          6           1
 N asparagine          3.3         12           1
 P proline            13.1         47           8
 Q glutamine           5.0         18           2
 R arginine            5.6         20           3
 S serine             10.0         36           3
 T threonine           7.5         27           1
 V valine              5.3         19           1
 W tryptophan          1.4          5           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline rich 11 
PCLO                  0.048   piccolo isoform 2 
PCLO                  0.048   piccolo isoform 1 
RAPH1                 0.045   Ras association and pleckstrin homology domains 1 is...
FMNL2                 0.039   formin-like 2 
KIAA1598              0.039   shootin1 isoform a 
KDM6B                 0.038   lysine (K)-specific demethylase 6B 
DIAPH1                0.038   diaphanous 1 isoform 2 
DIAPH1                0.038   diaphanous 1 isoform 1 
JMY                   0.038   junction-mediating and regulatory protein 
ZFHX4                 0.037   zinc finger homeodomain 4 
PRR12                 0.037   proline rich 12 
LMOD2                 0.035   leiomodin 2 (cardiac) 
WAS                   0.035   Wiskott-Aldrich syndrome protein 
WHAMM                 0.035   WAS protein homolog associated with actin, golgi me...
TRERF1                0.035   transcriptional regulating factor 1 
FMNL3                 0.035   formin-like 3 isoform 2 
FMNL3                 0.035   formin-like 3 isoform 1 
ENAH                  0.034   enabled homolog isoform a 
ENAH                  0.034   enabled homolog isoform b 
ZNF827                0.032   zinc finger protein 827 
DIAPH2                0.032   diaphanous 2 isoform 12C 
DIAPH2                0.032   diaphanous 2 isoform 156 
SETD1B                0.032   SET domain containing 1B 
CRTC1                 0.031   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.031   mucoepidermoid carcinoma translocated 1 isoform 1 [...
WASF2                 0.031   WAS protein family, member 2 
ZC3H4                 0.031   zinc finger CCCH-type containing 4 
ZNF341                0.031   zinc finger protein 341 
SETD1A                0.031   SET domain containing 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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