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Search of human proteins with 67188550
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b [Homo sapiens]
(867 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 1753 0.0
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 1631 0.0
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 65 2e-10
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 61 4e-09
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 61 4e-09
gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II, po... 60 7e-09
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 58 3e-08
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 57 6e-08
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 56 1e-07
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 54 6e-07
gi|42518068 trans-golgi network protein 2 [Homo sapiens] 53 1e-06
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 53 1e-06
gi|33286446 opioid growth factor receptor [Homo sapiens] 52 2e-06
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 50 7e-06
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 49 2e-05
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 49 2e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 49 3e-05
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 49 3e-05
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex... 48 3e-05
gi|157738619 smoothelin-like 1 [Homo sapiens] 48 3e-05
gi|83921609 hypothetical protein LOC127254 [Homo sapiens] 48 3e-05
gi|5803080 macrophage receptor with collagenous structure [Homo ... 47 6e-05
gi|150170670 piccolo isoform 2 [Homo sapiens] 47 6e-05
gi|150378539 piccolo isoform 1 [Homo sapiens] 47 6e-05
gi|219555649 dullard homolog [Homo sapiens] 47 6e-05
gi|31542547 dullard homolog [Homo sapiens] 47 6e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 47 8e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 47 8e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 47 1e-04
gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo sa... 47 1e-04
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 1753 bits (4539), Expect = 0.0
Identities = 867/867 (100%), Positives = 867/867 (100%)
Query: 1 MEVPAAGRVPAEGAPTAAVAEVRCPGPAPLRLLEWRVAAGAAVRIGSVLAVFEAAASAQS 60
MEVPAAGRVPAEGAPTAAVAEVRCPGPAPLRLLEWRVAAGAAVRIGSVLAVFEAAASAQS
Sbjct: 1 MEVPAAGRVPAEGAPTAAVAEVRCPGPAPLRLLEWRVAAGAAVRIGSVLAVFEAAASAQS 60
Query: 61 SGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVVAPGAVLVRLEGCSHPVVM 120
SGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVVAPGAVLVRLEGCSHPVVM
Sbjct: 61 SGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVVAPGAVLVRLEGCSHPVVM 120
Query: 121 KGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRN 180
KGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRN
Sbjct: 121 KGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRN 180
Query: 181 RKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLY 240
RKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLY
Sbjct: 181 RKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLY 240
Query: 241 ELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCI 300
ELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCI
Sbjct: 241 ELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCI 300
Query: 301 IDDREDVWKFAPNLITVKKYVYFQGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVR 360
IDDREDVWKFAPNLITVKKYVYFQGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVR
Sbjct: 301 IDDREDVWKFAPNLITVKKYVYFQGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVR 360
Query: 361 DPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELA 420
DPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELA
Sbjct: 361 DPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELA 420
Query: 421 GAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEG 480
GAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEG
Sbjct: 421 GAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEG 480
Query: 481 KRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDG 540
KRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDG
Sbjct: 481 KRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDG 540
Query: 541 LCGLGNGCADRKEAETESQNSELSGVTAGESLDQSMEEEEEEDTDEDDHLIYLEEILVRV 600
LCGLGNGCADRKEAETESQNSELSGVTAGESLDQSMEEEEEEDTDEDDHLIYLEEILVRV
Sbjct: 541 LCGLGNGCADRKEAETESQNSELSGVTAGESLDQSMEEEEEEDTDEDDHLIYLEEILVRV 600
Query: 601 HTDYYAKYDRYLNKEIEEAPDIRKIVPELKSKVLADVAIIFSGLHPTNFPIEKTREHYHA 660
HTDYYAKYDRYLNKEIEEAPDIRKIVPELKSKVLADVAIIFSGLHPTNFPIEKTREHYHA
Sbjct: 601 HTDYYAKYDRYLNKEIEEAPDIRKIVPELKSKVLADVAIIFSGLHPTNFPIEKTREHYHA 660
Query: 661 TALGAKILTRLVLSPDAPDRATHLIAARAGTEKVLQAQECGHLHVVNPDWLWSCLERWDK 720
TALGAKILTRLVLSPDAPDRATHLIAARAGTEKVLQAQECGHLHVVNPDWLWSCLERWDK
Sbjct: 661 TALGAKILTRLVLSPDAPDRATHLIAARAGTEKVLQAQECGHLHVVNPDWLWSCLERWDK 720
Query: 721 VEEQLFPLRDDHTKAQRENSPAAFPDREGVPPTALFHPMPVLPKAQPGPEVRIYDSNTGK 780
VEEQLFPLRDDHTKAQRENSPAAFPDREGVPPTALFHPMPVLPKAQPGPEVRIYDSNTGK
Sbjct: 721 VEEQLFPLRDDHTKAQRENSPAAFPDREGVPPTALFHPMPVLPKAQPGPEVRIYDSNTGK 780
Query: 781 LIRTGARGPPAPSSSLPIRQEPSSFRWTTSLEKAATTATARRGGLRSRRRSPSPGSQGPA 840
LIRTGARGPPAPSSSLPIRQEPSSFRWTTSLEKAATTATARRGGLRSRRRSPSPGSQGPA
Sbjct: 781 LIRTGARGPPAPSSSLPIRQEPSSFRWTTSLEKAATTATARRGGLRSRRRSPSPGSQGPA 840
Query: 841 GSGRSGHLRPARGARQGAGGPEATRGS 867
GSGRSGHLRPARGARQGAGGPEATRGS
Sbjct: 841 GSGRSGHLRPARGARQGAGGPEATRGS 867
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 1631 bits (4223), Expect = 0.0
Identities = 806/806 (100%), Positives = 806/806 (100%)
Query: 1 MEVPAAGRVPAEGAPTAAVAEVRCPGPAPLRLLEWRVAAGAAVRIGSVLAVFEAAASAQS 60
MEVPAAGRVPAEGAPTAAVAEVRCPGPAPLRLLEWRVAAGAAVRIGSVLAVFEAAASAQS
Sbjct: 1 MEVPAAGRVPAEGAPTAAVAEVRCPGPAPLRLLEWRVAAGAAVRIGSVLAVFEAAASAQS 60
Query: 61 SGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVVAPGAVLVRLEGCSHPVVM 120
SGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVVAPGAVLVRLEGCSHPVVM
Sbjct: 61 SGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVVAPGAVLVRLEGCSHPVVM 120
Query: 121 KGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRN 180
KGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRN
Sbjct: 121 KGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRN 180
Query: 181 RKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLY 240
RKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLY
Sbjct: 181 RKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLY 240
Query: 241 ELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCI 300
ELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCI
Sbjct: 241 ELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCI 300
Query: 301 IDDREDVWKFAPNLITVKKYVYFQGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVR 360
IDDREDVWKFAPNLITVKKYVYFQGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVR
Sbjct: 301 IDDREDVWKFAPNLITVKKYVYFQGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVR 360
Query: 361 DPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELA 420
DPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELA
Sbjct: 361 DPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELA 420
Query: 421 GAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEG 480
GAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEG
Sbjct: 421 GAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEG 480
Query: 481 KRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDG 540
KRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDG
Sbjct: 481 KRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDG 540
Query: 541 LCGLGNGCADRKEAETESQNSELSGVTAGESLDQSMEEEEEEDTDEDDHLIYLEEILVRV 600
LCGLGNGCADRKEAETESQNSELSGVTAGESLDQSMEEEEEEDTDEDDHLIYLEEILVRV
Sbjct: 541 LCGLGNGCADRKEAETESQNSELSGVTAGESLDQSMEEEEEEDTDEDDHLIYLEEILVRV 600
Query: 601 HTDYYAKYDRYLNKEIEEAPDIRKIVPELKSKVLADVAIIFSGLHPTNFPIEKTREHYHA 660
HTDYYAKYDRYLNKEIEEAPDIRKIVPELKSKVLADVAIIFSGLHPTNFPIEKTREHYHA
Sbjct: 601 HTDYYAKYDRYLNKEIEEAPDIRKIVPELKSKVLADVAIIFSGLHPTNFPIEKTREHYHA 660
Query: 661 TALGAKILTRLVLSPDAPDRATHLIAARAGTEKVLQAQECGHLHVVNPDWLWSCLERWDK 720
TALGAKILTRLVLSPDAPDRATHLIAARAGTEKVLQAQECGHLHVVNPDWLWSCLERWDK
Sbjct: 661 TALGAKILTRLVLSPDAPDRATHLIAARAGTEKVLQAQECGHLHVVNPDWLWSCLERWDK 720
Query: 721 VEEQLFPLRDDHTKAQRENSPAAFPDREGVPPTALFHPMPVLPKAQPGPEVRIYDSNTGK 780
VEEQLFPLRDDHTKAQRENSPAAFPDREGVPPTALFHPMPVLPKAQPGPEVRIYDSNTGK
Sbjct: 721 VEEQLFPLRDDHTKAQRENSPAAFPDREGVPPTALFHPMPVLPKAQPGPEVRIYDSNTGK 780
Query: 781 LIRTGARGPPAPSSSLPIRQEPSSFR 806
LIRTGARGPPAPSSSLPIRQEPSSFR
Sbjct: 781 LIRTGARGPPAPSSSLPIRQEPSSFR 806
Score = 31.6 bits (70), Expect = 3.3
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 372 EPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAP-TSSQELAGAPEPQGSCA 430
E ++K ++ G E + DS + +P+E++ P + P T + GAP A
Sbjct: 852 EDLESMDKEVDDILG-EGSDDSDSEKR-RPEEQEEEPQPRKPGTRRERTLGAPASSERSA 909
Query: 431 QGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSS 471
GGR G + + D S ESS+E EG+ S +
Sbjct: 910 AGGRGPRGHKRKL----NEEDAASESSRESSNEDEGSSSEA 946
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 65.5 bits (158), Expect = 2e-10
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 23/217 (10%)
Query: 332 PPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAAT 391
PPG E + + N S+G P P+G Q+ G P G + G+++
Sbjct: 53 PPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQG 112
Query: 392 PRDSPRPGKPDERDIWPPAQAPTSSQELAGAP-EPQGSCAQGGRVAPGQRPAQGATGTDL 450
P PRPGKP+ PP Q SQ P +P+G QGG + G P G
Sbjct: 113 P--PPRPGKPE----GPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPE--- 163
Query: 451 DFDLSSDSESSSESEGTKSSSSASDG-------ESEGKRGRQ-KPKAAPEGAGALAQGSS 502
+ ++S+G +G +S+G R KP+ P G +QG
Sbjct: 164 ----GPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPP 219
Query: 503 LEPGRPAAPSLPGEAEPGAHAPDK-EPELGGQEEGER 538
PG+P P G +P P +P+ +EG +
Sbjct: 220 PRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNK 256
Score = 60.5 bits (145), Expect = 7e-09
Identities = 57/218 (26%), Positives = 81/218 (37%), Gaps = 25/218 (11%)
Query: 324 QGTGDMNAPP---GSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKP 380
QG PP G E + N S+G P + P+G Q+ G P G +
Sbjct: 63 QGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEG 122
Query: 381 ARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAP-EPQGSCAQGGRVAPGQ 439
G+++ P PRPGKP+ PP Q SQ P +P+G QGG + G
Sbjct: 123 PPPQGGNQSQGP--PPRPGKPEG----PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 176
Query: 440 RPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDG-------ESEGKRGRQ-KPKAAP 491
P G + ++S+G +G +S+G R KP+ P
Sbjct: 177 PPHPGKPE-------GPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPP 229
Query: 492 EGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPE 529
G QG PG+P P +P P P+
Sbjct: 230 SQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQ 267
Score = 46.6 bits (109), Expect = 1e-04
Identities = 48/186 (25%), Positives = 70/186 (37%), Gaps = 27/186 (14%)
Query: 363 EGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGA 422
E V+Q +G + R G++ R P PGKP+ R P Q SQ
Sbjct: 21 EDVSQEESPSVISGKPEGRRPQGGNQPQ--RTPPPPGKPEGR----PPQGGNQSQGPPPR 74
Query: 423 P-EPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDG----- 476
P +P+G QGG + G P G + ++S+G +G
Sbjct: 75 PGKPEGPPPQGGNQSQGPPPRPGKPE-------GQPPQGGNQSQGPPPRPGKPEGPPPQG 127
Query: 477 --ESEGKRGRQ-KPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAE-----PGAHAPDKEP 528
+S+G R KP+ P G +QG PG+P P G + P P+ P
Sbjct: 128 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPP 187
Query: 529 ELGGQE 534
GG +
Sbjct: 188 PQGGNQ 193
Score = 33.5 bits (75), Expect = 0.88
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 456 SDSESSSESEGTKSSSSASDGESEGKR--GRQKPKAAP----EGAGALAQGSSLEPGRPA 509
S ++S +E + S S G+ EG+R G +P+ P + G QG + G P
Sbjct: 14 SSAQSLNEDVSQEESPSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPP 73
Query: 510 APSLP-GEAEPGAHAPDKEPELGGQEEGE 537
P P G G + P G+ EG+
Sbjct: 74 RPGKPEGPPPQGGNQSQGPPPRPGKPEGQ 102
Score = 30.0 bits (66), Expect = 9.7
Identities = 32/124 (25%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 324 QGTGDMNAPP---GSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKP 380
QG PP G E + N S+G P +G + G P G +
Sbjct: 189 QGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQG 248
Query: 381 ARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQR 440
G++ P RP P P P + + G P P QGGR R
Sbjct: 249 PPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPP----PQGGR---PHR 301
Query: 441 PAQG 444
P QG
Sbjct: 302 PPQG 305
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 61.2 bits (147), Expect = 4e-09
Identities = 66/278 (23%), Positives = 103/278 (37%), Gaps = 12/278 (4%)
Query: 324 QGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRD-PEGVTQAPGVEPSNGLEKPAR 382
+G G+ +E RKK + E E + E T+ G E G E
Sbjct: 758 EGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGG 817
Query: 383 ELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPA 442
E+ + + G+ +E + + +E E +G + G G+
Sbjct: 818 EVEEGKGEREEEEEE-GEGEEEEGEGEEEEGEGEEE-----EGEGKGEEEGEEGEGEEEG 871
Query: 443 QGATGTDLDFDLSSDSESSSESEGTKSSSSAS---DGESEGKRGRQKPKAAPEGAGALAQ 499
+ G + + + E E EG + +GE EG+ + K EG +
Sbjct: 872 EEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGE 931
Query: 500 GSSLE-PGRPAAPSLPGEAEPGA-HAPDKEPELGGQEEGERDGLCGLGNGCADRKEAETE 557
G E G GE E G ++E E G+EEGE +G G G G + E E E
Sbjct: 932 GEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGE 991
Query: 558 SQNSELSGVTAGESLDQSMEEEEEEDTDEDDHLIYLEE 595
+ E G GE ++ E EEE+ E + + EE
Sbjct: 992 EEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEE 1029
Score = 48.5 bits (114), Expect = 3e-05
Identities = 61/263 (23%), Positives = 92/263 (34%), Gaps = 19/263 (7%)
Query: 327 GDMNAPPGSRESQTRK---KVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARE 383
G++ G RE + + + G E E + EG + G E E E
Sbjct: 817 GEVEEGKGEREEEEEEGEGEEEEGEGEE-EEGEGEEEEGEGKGEEEGEEGEGEEEGEEGE 875
Query: 384 LNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQ 443
G E + G+ + + + + E +G + G G+ +
Sbjct: 876 GEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEE 935
Query: 444 GATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSL 503
G D E E E + +GE EG+ + EG G +G
Sbjct: 936 EGEGE------GEDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGE 989
Query: 504 ---EPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDGLCGLGNGCADRKEAETESQN 560
E G GE E +E E G+ EGE +G G G G + +E E E +
Sbjct: 990 GEEEEGEEEGEE-EGEGEEEGEGEGEEEE-EGEVEGEVEGEEGEGEG--EEEEGEEEGEE 1045
Query: 561 SELSGVTAGESLDQSMEEEEEED 583
E G GE ++ EEEEEE+
Sbjct: 1046 REKEG--EGEENRRNREEEEEEE 1066
Score = 37.7 bits (86), Expect = 0.046
Identities = 56/261 (21%), Positives = 98/261 (37%), Gaps = 36/261 (13%)
Query: 343 KVNHSRGTEVSEPSPPVR-----DPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPR 397
K + S+G +++P+ + + E + G E S G +E+ +E R
Sbjct: 560 KQHVSQGIFMTQPATTIEAFSDEEVEIPEEKEGAEDSKGNGIEEQEVEANEENVKVHGGR 619
Query: 398 PGKPD--ERDIWPPAQAPTSSQELAGAPEP------QGSCAQGGRVAPGQRPAQGATGTD 449
K + D+ A+ + G E G+C +G A + + G
Sbjct: 620 KEKTEILSDDLTDKAEVSEGKAKSVGEAEDGPEGRGDGTCEEGSSGAEHWQDEEREKGEK 679
Query: 450 L----DFDLSSDSESS-SESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLE 504
+ + + E +E E K + E ++G QK E + +G E
Sbjct: 680 DKGRGEMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQK-----ERNQEMEEGGEEE 734
Query: 505 PGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDGLCGLGNGCADRKEAETESQNSELS 564
G GE E G ++E E G+EEGE + + G +R++ E E + E +
Sbjct: 735 HGE-------GEEEEGDREEEEEKEGEGKEEGEGEEVEG------EREKEEGERKKEERA 781
Query: 565 GVTAGESLDQSMEEEEEEDTD 585
G + E EEE+T+
Sbjct: 782 GKEEKGEEEGDQGEGEEEETE 802
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 61.2 bits (147), Expect = 4e-09
Identities = 54/206 (26%), Positives = 74/206 (35%), Gaps = 22/206 (10%)
Query: 332 PPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAAT 391
PPG + + N SR + P P+G Q G P G + G++
Sbjct: 155 PPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK--- 211
Query: 392 PRDSPRPGKPDERDIWPPAQAPTSSQELAGAP-EPQGSCAQGGRVAPGQRPAQGATGTDL 450
P+ P PGKP PP Q SQ P +PQG QGG G P G
Sbjct: 212 PQGPPPPGKPQG----PPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQ--- 264
Query: 451 DFDLSSDSESSSESEGT----KSSSSASDGESEGKRGRQ---KPKAAPEGAGALAQGSSL 503
+ ++ +G K G S+ + R KP+ P G QG
Sbjct: 265 ----GPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPP 320
Query: 504 EPGRPAAPSLPGEAEPGAHAPDKEPE 529
PG+P P G +P P +P+
Sbjct: 321 PPGKPQGPPPQGGNKPQGPPPPGKPQ 346
Score = 54.7 bits (130), Expect = 4e-07
Identities = 51/213 (23%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 325 GTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPAREL 384
G PP + + + SR P P+G Q G P G +
Sbjct: 86 GNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 145
Query: 385 NGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAP-EPQGSCAQGGRVAPGQRPAQ 443
G++ P+ P PGKP PP Q S+ P +PQG QGG G P
Sbjct: 146 GGNK---PQGPPPPGKPQG----PPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP 198
Query: 444 GATGTDLDFDLSSDSESSSESEGT----KSSSSASDGESEGKRGRQ---KPKAAPEGAGA 496
G + ++ +G K G+++ + R KP+ P G
Sbjct: 199 GKPQ-------GPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGN 251
Query: 497 LAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPE 529
QG PG+P P G +P P +P+
Sbjct: 252 QPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 284
Score = 54.3 bits (129), Expect = 5e-07
Identities = 48/186 (25%), Positives = 69/186 (37%), Gaps = 25/186 (13%)
Query: 355 PSPPVRD----PEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPA 410
PSPP + P+G Q G P G + G++ P+ P PGKP PP
Sbjct: 51 PSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK---PQGPPPPGKPQG----PPP 103
Query: 411 QAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGT--- 467
Q S + +PQG QGG G P G + ++ +G
Sbjct: 104 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ-------GPPPQGGNKPQGPPPP 156
Query: 468 -KSSSSASDGESEGKRGRQ---KPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHA 523
K G+++ + R KP+ P G QG PG+P P G +P
Sbjct: 157 GKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 216
Query: 524 PDKEPE 529
P +P+
Sbjct: 217 PPGKPQ 222
Score = 43.5 bits (101), Expect = 8e-04
Identities = 53/203 (26%), Positives = 73/203 (35%), Gaps = 27/203 (13%)
Query: 331 APPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAA 390
+PPG + + N +G P P+G + G P + P + GS++
Sbjct: 237 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQ-GGSKSR 295
Query: 391 TPRDSPRPGKPDERDIWPPAQAPTSSQELAGAP-EPQGSCAQGGRVAPGQRPAQGATGTD 449
+ R SP PGKP PP Q Q P +PQG QGG G P G
Sbjct: 296 SSR-SP-PGKPQ----GPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG-- 347
Query: 450 LDFDLSSDSESSSESEGTKSSSSASDG--ESEGKRGRQKPKAAPEGAGALAQGSSLEP-G 506
+ S+S +S G + EG P+ P AG Q P G
Sbjct: 348 ------PPPQGGSKSRSARSPPGKPQGPPQQEG----NNPQGPPPPAGGNPQQPQAPPAG 397
Query: 507 RPAAPSLPGEAEPGAHAPDKEPE 529
+P P P P P + P+
Sbjct: 398 QPQGPPRP----PQGGRPSRPPQ 416
Score = 39.7 bits (91), Expect = 0.012
Identities = 38/156 (24%), Positives = 50/156 (32%), Gaps = 26/156 (16%)
Query: 378 EKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAP----EPQGSCAQGG 433
E P+ + A P+ +P P P P + G P +PQG QGG
Sbjct: 27 ESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 86
Query: 434 RVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEG 493
G P G +G KS S S KP+ P
Sbjct: 87 NKPQGPPPPGKPQGPP--------------PQGDKSRSPRSPPG--------KPQGPPPQ 124
Query: 494 AGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPE 529
G QG PG+P P G +P P +P+
Sbjct: 125 GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 160
Score = 30.4 bits (67), Expect = 7.4
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 445 ATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQ-KPKAAPEGAGALAQGSSL 503
++ +L+ D+S + S + + + + +G KP+ P G QG
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPP 73
Query: 504 EPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGER 538
PG+P P G +P P +P+ G +G++
Sbjct: 74 PPGKPQGPPPQGGNKPQGPPPPGKPQ-GPPPQGDK 107
>gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase like 2 [Homo sapiens]
Length = 466
Score = 60.5 bits (145), Expect = 7e-09
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Query: 167 EQLGREDQQRLHRNR--KLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTR 224
EQL R+ L + L++DLD+TL+H + + + FQ + ++ R
Sbjct: 270 EQLNRKPALPLKTRSTPEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQ--VYVR 327
Query: 225 LRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECI 278
LRP ++FLE+++++YE+ +FT ++YA + LDP+K+L HR L R+ C+
Sbjct: 328 LRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHR-LFREHCV 380
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 58.2 bits (139), Expect = 3e-08
Identities = 79/287 (27%), Positives = 121/287 (42%), Gaps = 44/287 (15%)
Query: 364 GVTQAPGV---EPSNGLEKPARELN---GSEAATPRDSPRPGKPDERDIWPPAQAPTSSQ 417
G++Q PGV E G ++ R+ + G R GK + ++ + Q
Sbjct: 1733 GLSQGPGVDEGEDGEGSQRLNRDKDPKLGEAEGDAMAQEREGKTHNSETSAGSELGEAEQ 1792
Query: 418 ELAGAPEP--------------QGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSE 463
E G E QG A GG PGQ + GA G + ++ E+ E
Sbjct: 1793 EGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQ--SDGAEGIEAP---EAEGEAQPE 1847
Query: 464 SEGTKSSSSASDGESEGKRGRQKPKA----APEGAGALAQGSSLEPGRPAAPSLPGEAEP 519
SEG ++ + +G+++ G +P++ APE G AQ S + P A
Sbjct: 1848 SEGVEAPEA--EGDAQEAEGEAQPESEDVEAPEAEGE-AQPESEDVETPEAEWEVQPESE 1904
Query: 520 GAHAPDKE----PELGGQEEGERDGLCGLGNGCADRKEAETESQNSELSGVTAGES-LDQ 574
GA AP+ E PE E E +G + A+ +EAE +Q +E G T ES + +
Sbjct: 1905 GAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAE--GQTQPESEVIE 1962
Query: 575 SMEEEEEEDTDEDDHLIYLEEILVRVHTDYYAKYDRYLNKEIEEAPD 621
S E EEE + +D +E + V V T A+ + E EAP+
Sbjct: 1963 SQEAEEEAQPESED----VEALEVEVETQ-EAEGEAQPESEDVEAPE 2004
Score = 57.8 bits (138), Expect = 4e-08
Identities = 73/261 (27%), Positives = 106/261 (40%), Gaps = 43/261 (16%)
Query: 347 SRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEA-ATPRDSPRPGKPDERD 405
S G E E + EG Q S+G+E P E EA +++ P+ D
Sbjct: 2029 SEGEEAQEVEGETQKTEGDAQPE----SDGVEAPEAEEEAQEAEGEVQEAEGEAHPESED 2084
Query: 406 IWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESE 465
+ +QE G +P+ ++G + AQ A G + ++ E+ ESE
Sbjct: 2085 V--------DAQEAEGEAQPE---SEGVEAPEAEGEAQKAEGIEAP---ETEGEAQPESE 2130
Query: 466 GTKSSSSASDG--ESEGKRGRQ-KPKAAPEGAGALAQGSSLEPGRP-----AAPSLPGEA 517
G ++ + + ESEG + + +A PE G AQ + E +P AP GEA
Sbjct: 2131 GIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAE-EEAQPELEGVEAPEAEGEA 2189
Query: 518 EP---GAHAPDKE----PELGGQEEGERDGLCGLGNGCADRKEAETESQNSELSGVTAGE 570
+P G AP+ E PEL G E E + + EAE E+Q E G T GE
Sbjct: 2190 QPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQ-PESEGETQGE 2248
Query: 571 -------SLDQSMEEEEEEDT 584
SL EE E +
Sbjct: 2249 KKGSPQVSLGDGQSEEASESS 2269
Score = 52.8 bits (125), Expect = 1e-06
Identities = 65/279 (23%), Positives = 100/279 (35%), Gaps = 25/279 (8%)
Query: 325 GTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQ-------APGVEPSNGL 377
G + AP E+Q S G E E ++ EG Q AP E
Sbjct: 1831 GAEGIEAPEAEGEAQPE-----SEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQP 1885
Query: 378 EKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAP 437
E E +E +S P+ P + E G EP+ A+
Sbjct: 1886 ESEDVETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEE 1945
Query: 438 GQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKA----APEG 493
+ A+G T + + S ++E ++ E + + E++ G +P++ APE
Sbjct: 1946 AAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPE- 2004
Query: 494 AGALAQGSSLEPGRPAAPSLPG-EAEP---GAHAPDKEPELGGQEEGERDGLCGLGNGCA 549
A+G E A P G EA+P G A + E E E + G+ A
Sbjct: 2005 ----AEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEA 2060
Query: 550 DRKEAETESQNSELSGVTAGESLDQSMEEEEEEDTDEDD 588
+ + E E + E G ES D +E E E E +
Sbjct: 2061 EEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESE 2099
Score = 45.1 bits (105), Expect = 3e-04
Identities = 63/283 (22%), Positives = 101/283 (35%), Gaps = 40/283 (14%)
Query: 328 DMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVE-----PSNGLEKPAR 382
D++A E+Q S G E E + EG+ +AP E S G+E P
Sbjct: 2084 DVDAQEAEGEAQPE-----SEGVEAPEAEGEAQKAEGI-EAPETEGEAQPESEGIEAPEA 2137
Query: 383 ELNG---SEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAG--APEPQGSCA--QGGRV 435
E SE +D+ +P+ I + EL G APE +G G
Sbjct: 2138 EGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIE 2197
Query: 436 AP-----GQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAA 490
AP Q +G + + + + E E + S+GE++G++ +
Sbjct: 2198 APEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSL 2257
Query: 491 PEGAGALAQGSS--LEPGRPAAPSLPG----EAEPGAHAPDKEPELGG-----QEEGERD 539
+G A SS + RP P PG PG+ Q++ E D
Sbjct: 2258 GDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRASSWGNCWQKDSEND 2317
Query: 540 GLCGLGNGCADRKEAETESQNSELSGVTAGESLDQSMEEEEEE 582
+ G D + + +S + + A +S E+EE
Sbjct: 2318 HVLG------DTRSPDAKSTGTPHAERKATRMYPESSTSEQEE 2354
Score = 38.9 bits (89), Expect = 0.021
Identities = 52/204 (25%), Positives = 70/204 (34%), Gaps = 36/204 (17%)
Query: 409 PAQAPTSSQELAGAPEPQGSCAQGGRVAPGQ--------RPAQGATGTDLDFDLSSDSES 460
P + Q++ + + + VAPG+ R QGA G
Sbjct: 1682 PIKEAFDLQQILQRKRGEHTDGEAAEVAPGKTHTDPTSTRTVQGAEG--------GLGPG 1733
Query: 461 SSESEGTKSSSSASDGESEGKRGRQK-PKAAPEGAGALAQG--SSLEPGRPAAPSLPGEA 517
S+ G DGE + R K PK A+AQ +A S GEA
Sbjct: 1734 LSQGPGV---DEGEDGEGSQRLNRDKDPKLGEAEGDAMAQEREGKTHNSETSAGSELGEA 1790
Query: 518 EPGAHAPDKEPELGGQEEGERDGLCGLGNGCADR-------------KEAETESQNSELS 564
E + E GGQ G D L G D+ EAE E+Q E
Sbjct: 1791 EQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQ-PESE 1849
Query: 565 GVTAGESLDQSMEEEEEEDTDEDD 588
GV A E+ + E E E + +D
Sbjct: 1850 GVEAPEAEGDAQEAEGEAQPESED 1873
Score = 37.4 bits (85), Expect = 0.061
Identities = 43/172 (25%), Positives = 63/172 (36%), Gaps = 34/172 (19%)
Query: 380 PARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAP--EPQGSCA------- 430
PA E + P S P P++ A ++ AG E G C
Sbjct: 455 PASSTGLPEGSEPESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCIDGAGLGG 514
Query: 431 --QGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPK 488
QGGR+ P R +GA S SS S G+ SS G +G G+ + +
Sbjct: 515 PEQGGRLTPRARSEEGA------------SSDSSASTGSHEGSSEWGGRPQGCPGKARAE 562
Query: 489 AAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDG 540
+ + A E G PA+P+L + + D + E GQ + G
Sbjct: 563 TSQQEAS--------EGGDPASPAL---SLSSLRSDDLQAETQGQGTEQATG 603
Score = 35.0 bits (79), Expect = 0.30
Identities = 42/164 (25%), Positives = 56/164 (34%), Gaps = 35/164 (21%)
Query: 412 APTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSS 471
+P SS L EP+ SC + P G DS S S G + +
Sbjct: 454 SPASSTGLPEGSEPESSCCP-------RTPEDGV-----------DSASPSAQIGAERKA 495
Query: 472 SASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELG 531
S GE G PE G L + E G + S A G+H + E G
Sbjct: 496 GGSLGEDPGLCIDGAGLGGPEQGGRLTPRARSEEGASSDSS----ASTGSH--EGSSEWG 549
Query: 532 GQEEGERDGLCGLGNGCADRKEAETESQNSELSGVTAGESLDQS 575
G+ +G C + AET Q + G A +L S
Sbjct: 550 GRPQG-----------CPGKARAETSQQEASEGGDPASPALSLS 582
Score = 32.0 bits (71), Expect = 2.5
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 34/179 (18%)
Query: 374 SNGLEKPARELNGSEAATPRDSPRP--------GKPDERDIWP--------PAQAPTSSQ 417
S+ K G EA RD+P+P G+P++ + P P P
Sbjct: 781 SDSCSKSGAASLGEEA---RDTPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEA 837
Query: 418 ELAGAPEPQGSCAQ------GGRVAPGQRPAQ-GATGTDLDFDLSSDSESSSESEGTKS- 469
+ +PE C + GR P +R + G+TG+ ++ S EGT+
Sbjct: 838 QRGPSPEASWLCGRYCPTPPRGRPCPQRRSSSCGSTGS--SHQSTARGPGGSPQEGTRQP 895
Query: 470 SSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEP 528
+ S G + G R +A +GAG ++G S E + G+ E +P P
Sbjct: 896 GPTPSPGPNSGASRR---SSASQGAG--SRGLSEEKTLRSGGGPQGQEEASGVSPSSLP 949
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 57.4 bits (137), Expect = 6e-08
Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 31/267 (11%)
Query: 366 TQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGK-----PDERDIWPPAQAPTSSQELA 420
T+ PG E +G AR ++ P SP PG+ +E + +Q T++ E A
Sbjct: 8 TKDPGGEGGDGESLAARPSKIKASSGPPTSPEPGELESEPEEEEEEQAASQGGTAADEQA 67
Query: 421 GAPEPQGSCAQGGRVAPGQ--RPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGES 478
AP+ + G PG+ RPA+ + ++ ++ + E A E
Sbjct: 68 EAPKGLTAAEAAGEEGPGEPGRPAEPQPEPEEPAEVGAEEPAQPEP-------GAGPEEL 120
Query: 479 EGKRGRQKPKAAPEGAGALAQGSSL-----EPGRPAAPSLPGEAEPGAHAPDKEPELGGQ 533
E + G ++ + A EG Q S E AAP E G +E + G
Sbjct: 121 EAEAGAEELEQAAEGKEVRFQASLPLTRIDEEEAAAAPEAETERVEGEEEDKEETQRDGA 180
Query: 534 EEGERDGLCGLGNGCADRKEAETESQNSELSGVTAGESLDQSMEEEE-EEDTDEDDHLIY 592
E ERDG + + A+++ + L G E L+ S E ++ +E D L
Sbjct: 181 ESKERDG---------EGRPAKSQEEGKRLYGRDEFEDLEWSEEVQKLQEQQLRSDLLDQ 231
Query: 593 LEEILVRVHTDYYAKYDRYLNKEIEEA 619
+LV + +Y+ YL +I EA
Sbjct: 232 YRSLLVERNRS--QRYNLYLQHKIFEA 256
Score = 42.7 bits (99), Expect = 0.001
Identities = 51/199 (25%), Positives = 74/199 (37%), Gaps = 15/199 (7%)
Query: 326 TGDMNAPPGSRESQTRK--KVNHSRGTEVS------EPSPPVRDPEGVTQAPGVEPSNGL 377
T D G ES + K+ S G S E P + E G
Sbjct: 8 TKDPGGEGGDGESLAARPSKIKASSGPPTSPEPGELESEPEEEEEEQAASQGGTAADEQA 67
Query: 378 EKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAP 437
E P + L +EAA PG+P E P A ++E A PEP + A
Sbjct: 68 EAP-KGLTAAEAAGEEGPGEPGRPAEPQPEPEEPAEVGAEEPA-QPEPGAGPEELEAEAG 125
Query: 438 GQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGAL 497
+ Q A G ++ F S E E +++A + E+E G ++ K + GA
Sbjct: 126 AEELEQAAEGKEVRFQASLPLTRIDEEE----AAAAPEAETERVEGEEEDKEETQRDGAE 181
Query: 498 AQGSSLEPGRPAAPSLPGE 516
++ E GRPA G+
Sbjct: 182 SKERDGE-GRPAKSQEEGK 199
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 56.2 bits (134), Expect = 1e-07
Identities = 56/205 (27%), Positives = 74/205 (36%), Gaps = 25/205 (12%)
Query: 332 PPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGL-EKPARELNGSEAA 390
PPG + + N S+G P R P+G Q+ G P G E+P +
Sbjct: 53 PPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQG 112
Query: 391 TPRDSPRPGKPDERDIWPPAQAPTSSQELAGAP-EPQGSCAQGGRVAPGQRPAQGATGTD 449
TP P PGKP+ PP Q S P +P+ QGG + G P G
Sbjct: 113 TP---PPPGKPER----PPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPG----- 160
Query: 450 LDFDLSSDSESSSESEGTKSSSSAS-DGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRP 508
E EG KS S+ S G+ +G ++ K QG G P
Sbjct: 161 -------KPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNP 213
Query: 509 AAPSLPGEAEPGAHAPDKEPELGGQ 533
P P +P P P GG+
Sbjct: 214 QQPQAPPAGKPQGPPP---PPQGGR 235
Score = 50.4 bits (119), Expect = 7e-06
Identities = 52/188 (27%), Positives = 69/188 (36%), Gaps = 28/188 (14%)
Query: 332 PPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAAT 391
PPG E + + N S+G P P+G Q+ G P G KP R +
Sbjct: 74 PPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPG--KPERPPPQGGNQS 131
Query: 392 PRDSPRPGKPDERDIWPPAQAPTSSQELAGAP-EPQGSCAQGGRVAPGQRPAQGATGTDL 450
R P PGKP+ PP Q SQ P +P+G Q G + R G
Sbjct: 132 HRPPPPPGKPER----PPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPG------ 181
Query: 451 DFDLSSDSESSSESEGTKSSSSASDGESEGK----RGRQKPKAAPEGAGALAQGSSLEP- 505
+ + EG K G+ +G Q+P+A P G QG P
Sbjct: 182 ------KPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGK---PQGPPPPPQ 232
Query: 506 -GRPAAPS 512
GRP P+
Sbjct: 233 GGRPPRPA 240
Score = 42.7 bits (99), Expect = 0.001
Identities = 47/187 (25%), Positives = 66/187 (35%), Gaps = 34/187 (18%)
Query: 357 PPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSS 416
P R P+G Q P G + G+++ P P PGKP+ R P Q S
Sbjct: 36 PEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGP--PPPPGKPEGR----PPQGGNQS 89
Query: 417 QELAGAP-EPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASD 475
Q P +P+ QGG + G P G K
Sbjct: 90 QGPPPHPGKPERPPPQGGNQSQGTPPPPG-----------------------KPERPPPQ 126
Query: 476 GESEGKRGRQ---KPKAAPEGAGALAQGSSLEPGRP-AAPSLPGEAEPGAHAPDKEPELG 531
G ++ R KP+ P G +QG PG+P P G A +P +P+
Sbjct: 127 GGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGP 186
Query: 532 GQEEGER 538
Q+EG +
Sbjct: 187 PQQEGNK 193
Score = 34.7 bits (78), Expect = 0.39
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 456 SDSESSSESEGTKSSSSASDGESEGKR---GRQ---------KPKAAPEGAGALAQGSSL 503
S +ESSSE + S G+ EG+R G Q KP+ P G +QG
Sbjct: 14 SSAESSSEDVSQEESLFLISGKPEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPP 73
Query: 504 EPGRPAAPSLPGEAE-----PGAHAPDKEPELGGQE 534
PG+P G + P P++ P GG +
Sbjct: 74 PPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQ 109
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 53.9 bits (128), Expect = 6e-07
Identities = 49/211 (23%), Positives = 68/211 (32%), Gaps = 20/211 (9%)
Query: 325 GTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPAREL 384
G PP + + + SR P P+G Q G P G +
Sbjct: 65 GNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 124
Query: 385 NGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQG 444
G+ P+ P PGKP PP Q S + +PQG QGG G P G
Sbjct: 125 GGNR---PQGPPPPGKPQG----PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG 177
Query: 445 ATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQ------KPKAAPEGAGALA 498
+ + +G +G + R KP+ P G
Sbjct: 178 KPQ-------GPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQP 230
Query: 499 QGSSLEPGRPAAPSLPGEAEPGAHAPDKEPE 529
QG PG+P P G +P P +P+
Sbjct: 231 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 261
Score = 51.6 bits (122), Expect = 3e-06
Identities = 47/210 (22%), Positives = 72/210 (34%), Gaps = 21/210 (10%)
Query: 335 SRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRD 394
S + V+ + +P P+G + G P G + G++ P+
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNK---PQG 70
Query: 395 SPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDL 454
P PGKP PP Q S + +PQG QGG G P G
Sbjct: 71 PPPPGKPQG----PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ------- 119
Query: 455 SSDSESSSESEGTKSSSSASDGESEGKRGRQ------KPKAAPEGAGALAQGSSLEPGRP 508
+ + +G +G + R KP+ P G QG PG+P
Sbjct: 120 GPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP 179
Query: 509 AAPSLPGEAEPGAHAPDKEPELGGQEEGER 538
P G +P P +P+ G +G++
Sbjct: 180 QGPPPQGGKKPQGPPPPGKPQ-GPPPQGDK 208
Score = 42.4 bits (98), Expect = 0.002
Identities = 34/121 (28%), Positives = 46/121 (38%), Gaps = 8/121 (6%)
Query: 325 GTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPAREL 384
G PP + + + SR ++ P P+G Q G P G +
Sbjct: 187 GKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 246
Query: 385 NGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAP-EPQGSCAQGGRVAPGQRPAQ 443
G++ P+ P PGKP PPAQ + SQ P +PQG Q G G P
Sbjct: 247 GGNK---PQGPPPPGKPQ----GPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA 299
Query: 444 G 444
G
Sbjct: 300 G 300
Score = 35.4 bits (80), Expect = 0.23
Identities = 38/182 (20%), Positives = 57/182 (31%), Gaps = 19/182 (10%)
Query: 330 NAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEA 389
N P G + + +G + + PP P+G P + S + P + G
Sbjct: 167 NQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQG--PPPQGDKSRSSQSPPGKPQGPPP 224
Query: 390 ATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTD 449
P P + PP Q Q +PQG AQGG + R G
Sbjct: 225 QGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPG----- 279
Query: 450 LDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPA 509
+ + EG ++ + P P+G QG GRP+
Sbjct: 280 -------KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQG-----GRPS 327
Query: 510 AP 511
P
Sbjct: 328 RP 329
>gi|42518068 trans-golgi network protein 2 [Homo sapiens]
Length = 437
Score = 53.1 bits (126), Expect = 1e-06
Identities = 60/229 (26%), Positives = 88/229 (38%), Gaps = 30/229 (13%)
Query: 378 EKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAP 437
E R G+ + P S RPG + P + S+ A A P+ + + G A
Sbjct: 30 EAGVRPSAGNVSTHPSLSQRPGGSTKSHPEPQTPKDSPSKSSAEAQTPEDTPNKSGAEAK 89
Query: 438 GQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGAL 497
Q+ + +G + S S+S SE++ TK S+S S E Q PK + +GA
Sbjct: 90 TQKDSSNKSGAEAKTQKGSTSKSGSEAQTTKDSTSKSHPEL------QTPKDSTGKSGAE 143
Query: 498 AQGSSLEPGRPAA--------PSLPG-EAEPGAHAPDKEPELGGQEEGERDGLCGLGNGC 548
AQ P R A PS G EA+ P+K G + +DG +G
Sbjct: 144 AQTPEDSPNRSGAEAKTQKDSPSKSGSEAQTTKDVPNKS---GADGQTPKDG--SSKSGA 198
Query: 549 ADR----------KEAETESQNSELSGVTAGESLDQSMEEEEEEDTDED 587
D+ E +T S SG +D + EE T +D
Sbjct: 199 EDQTPKDVPNKSGAEKQTPKDGSNKSGAEEQGPIDGPSKSGAEEQTSKD 247
Score = 45.4 bits (106), Expect = 2e-04
Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 22/205 (10%)
Query: 337 ESQTRKKVNHSRGTEVSEP--SPPVRDPEGVTQAPGVEPSNG---LEKPARELNGSEAAT 391
E QT K E P +P E TQ S +K + +GSEA T
Sbjct: 59 EPQTPKDSPSKSSAEAQTPEDTPNKSGAEAKTQKDSSNKSGAEAKTQKGSTSKSGSEAQT 118
Query: 392 PRDSPRPGKPDERDIWPPAQAPTSSQELAGAPE--PQGSCAQGGRVAPGQRPAQGATGTD 449
+DS P+ Q P S +GA P+ S + G A Q+ + +G++
Sbjct: 119 TKDSTSKSHPE-------LQTPKDSTGKSGAEAQTPEDSPNRSGAEAKTQKDSPSKSGSE 171
Query: 450 LDFDLSSDSESSSESEGTKSSSSASDGESE------GKRGRQK--PKAAPEGAGALAQGS 501
++S ++ + K SS S E + K G +K PK +GA QG
Sbjct: 172 AQTTKDVPNKSGADGQTPKDGSSKSGAEDQTPKDVPNKSGAEKQTPKDGSNKSGAEEQGP 231
Query: 502 SLEPGRPAAPSLPGEAEPGAHAPDK 526
P + A + P P++
Sbjct: 232 IDGPSKSGAEEQTSKDSPNKVVPEQ 256
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 53.1 bits (126), Expect = 1e-06
Identities = 61/192 (31%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 330 NAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGL----EKPARELN 385
+A P +R ++T + S+ + S+P P R P VTQA G P G + PAR L
Sbjct: 1861 SATPPARLAKTPSS-SSSQTSPASQPLPRKRPP--VTQAAGALPGPGASPVPKTPARTLL 1917
Query: 386 GSEAATPRDS---PRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPA 442
+ T R P +P R P A+A PEP G PG R
Sbjct: 1918 AKQHKTQRSPVRIPFMQRPARRGPPPLARA---------VPEPGPRGRAGTEAGPGARG- 1967
Query: 443 QGATG-TDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGS 501
G G + LSS SESS S + + ES G R R+ ++ E A + QG+
Sbjct: 1968 -GRLGLVRVASALSSGSESSDRSGFRRQLTFIK--ESPGLRRRRSELSSAESAASAPQGA 2024
Query: 502 SLEPGRPAAPSL 513
S GRPA P++
Sbjct: 2025 SPRRGRPALPAV 2036
Score = 35.0 bits (79), Expect = 0.30
Identities = 59/214 (27%), Positives = 85/214 (39%), Gaps = 41/214 (19%)
Query: 324 QGTGDMNAPPGSRESQ---TRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKP 380
+G A PG+R + R S G+E S+ S R + ++PG L +
Sbjct: 1954 RGRAGTEAGPGARGGRLGLVRVASALSSGSESSDRSGFRRQLTFIKESPG------LRRR 2007
Query: 381 ARELNGSEAATPRD---SPRPGKPDERDIWPPAQAPTSSQELAGAPE----PQGSCAQGG 433
EL+ +E+A SPR G+P ++ + +EL AP P
Sbjct: 2008 RSELSSAESAASAPQGASPRRGRPALPAVF---LCSSRCEELRAAPRQGPAPARQRPPAA 2064
Query: 434 RVAPGQRPAQGATGTDLDFDLSSDSES-------SSESEGTKSSSSASDGESEGKRGRQK 486
R +PG+RPA+ T S+S S ++ E K +S S +R
Sbjct: 2065 RPSPGERPARRTT---------SESPSRLPVRAPAARPETVKRYASLPH-ISVARRPDGA 2114
Query: 487 PKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPG 520
AAP A A + S EP RP LP A PG
Sbjct: 2115 VPAAPASADAARRSSDGEP-RP----LPRVAAPG 2143
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 52.0 bits (123), Expect = 2e-06
Identities = 56/209 (26%), Positives = 81/209 (38%), Gaps = 28/209 (13%)
Query: 355 PSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPT 414
P+P G ++ E + G P GS + TP SP DE PA++P+
Sbjct: 485 PAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGPAGDE-----PAESPS 539
Query: 415 SSQELAGAPEPQGSC----AQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSS 470
+ P P G A+ PG RPA G G + +ES SE+ G +
Sbjct: 540 ETP----GPRPAGPAGDEPAESPSETPGPRPA-GPAGDE-------PAESPSETPGPSPA 587
Query: 471 SSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPG-RPAAPSLPGEAEPGAHAPDKEPE 529
D +E P+ A A+ S PG RPA P+ AE + P P
Sbjct: 588 GPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPA 647
Query: 530 LGGQEEGERDGLCGLGNGCADRKEAETES 558
++E + G A+ ++AE ES
Sbjct: 648 GPTRDEPAKAG------EAAELQDAEVES 670
Score = 42.0 bits (97), Expect = 0.002
Identities = 51/189 (26%), Positives = 63/189 (33%), Gaps = 29/189 (15%)
Query: 337 ESQTRKKVNHSRGTEVSEPSPPVRDPEGVT-QAPGVEPSNGLEKPARELNGSEAATPRDS 395
E T + GT S P P G P PS E P G P +S
Sbjct: 501 EEDTEGRTGPKEGTPGSPSETPGPSPAGPAGDEPAESPS---ETPGPRPAGPAGDEPAES 557
Query: 396 PRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSC----AQGGRVAPGQRPAQGATGTDLD 451
P P R P P S P P G A+ PG RPA G G +
Sbjct: 558 PSE-TPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPA-GPAGDE-- 613
Query: 452 FDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAA------PEGAGALAQ------ 499
+ES SE+ G + + A D +E P A P AG A+
Sbjct: 614 -----PAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEAAELQDAEV 668
Query: 500 GSSLEPGRP 508
SS + G+P
Sbjct: 669 ESSAKSGKP 677
Score = 35.8 bits (81), Expect = 0.18
Identities = 66/278 (23%), Positives = 93/278 (33%), Gaps = 53/278 (19%)
Query: 346 HSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERD 405
HS+G + P R E P +E S G E + E +P++S + R
Sbjct: 334 HSKGGGRVDEGPQPRSVEPQDAGP-LERSQGDEAGGHGEDRPEPLSPKESKKRKLELSRR 392
Query: 406 IWPPAQ-APTSSQE-------LAGAPEPQGSCAQGGRVAPGQRPAQ---------GATGT 448
PP + P S+ E L G QGS G + GQ P + GA
Sbjct: 393 EQPPTEPGPQSASEVEKIALNLEGCALSQGSLRTGTQEVGGQDPGEAVQPCRQPLGARVA 452
Query: 449 DLDFDLSSDSESSSESEGTKSSSS-------------------ASDGESEGKRGRQKPKA 489
D E + +S S + + +G E GR PK
Sbjct: 453 DKVRKRRKVDEGAGDSAAVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKE 512
Query: 490 APEGAGALAQGSSLEPGRPA------APSLPGEAEPGAHAPDKEPELGGQEEGERDGLCG 543
G+ + G S P PA +PS P A D+ E + G R
Sbjct: 513 GTPGSPSETPGPS--PAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPA--- 567
Query: 544 LGNGCADRKEAETESQNSELSGVTAGESLDQSMEEEEE 581
G A + AE+ S+ S AG + D+ E E
Sbjct: 568 ---GPAGDEPAESPSETPGPS--PAGPTRDEPAESPSE 600
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 50.4 bits (119), Expect = 7e-06
Identities = 60/248 (24%), Positives = 90/248 (36%), Gaps = 47/248 (18%)
Query: 308 WKFAPNLITVKKYVYFQGTGDMNAP-PGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVT 366
W+ +L+++ Y G+ + AP P + + G EP P G+T
Sbjct: 2492 WQEPKSLLSLGSYPPAAGSSEPKAPWPKATD-----------GDLAQEPGP------GLT 2534
Query: 367 QAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQ 426
P + +K E +G+E + S G + + T +E G
Sbjct: 2535 FEDSGNPKSP-DKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEE-EGDKNGD 2592
Query: 427 GSCAQGGR--VAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGR 484
G C GGR A R A A+ + SS S SSS S + SSSS+S S
Sbjct: 2593 GGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2652
Query: 485 QKPKAAPEGAGALAQGSS--------------LEPGRPAAPS----LP-------GEAEP 519
++ + + + SS P A PS LP G+A P
Sbjct: 2653 SSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARP 2712
Query: 520 GAHAPDKE 527
AH+P K+
Sbjct: 2713 SAHSPGKK 2720
Score = 42.0 bits (97), Expect = 0.002
Identities = 58/268 (21%), Positives = 88/268 (32%), Gaps = 36/268 (13%)
Query: 340 TRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPG 399
TR K +R E S P R E ++ G+ P + EA R+ P G
Sbjct: 2433 TRPKPKKARAAEESGAKGPRRPGEEAELLVKLD-HEGVTSP-KSKKAKEALLLREDPGAG 2490
Query: 400 KPDERDI------WPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDL--- 450
E +PPA AG+ EP+ + Q P G T D
Sbjct: 2491 GWQEPKSLLSLGSYPPA---------AGSSEPKAPWPKATDGDLAQEPGPGLTFEDSGNP 2541
Query: 451 ----------DFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQG 500
D S+S SSS S + SSSS+S SE + + K G G +
Sbjct: 2542 KSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRN 2601
Query: 501 SSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDGLCGLGNGCADRKEAETESQN 560
S R A+P+ + + + + + + + S +
Sbjct: 2602 CSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSS------SSSSSSSSSSSSSSSS 2655
Query: 561 SELSGVTAGESLDQSMEEEEEEDTDEDD 588
S S ++ S S +E+ DD
Sbjct: 2656 SSSSSSSSSSSSSSSSTTDEDSSCSSDD 2683
Score = 37.4 bits (85), Expect = 0.061
Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 5/195 (2%)
Query: 335 SRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRD 394
S S + + S G+E ++ +G G S + A + S +++
Sbjct: 2564 SSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSS 2623
Query: 395 SPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDL 454
S + + +SS + + S + + + ++ TD D
Sbjct: 2624 SSSSSSSSSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSC 2679
Query: 455 SSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLP 514
SSD E++ S+ +A ++ + G+ +P A G A P +P P P
Sbjct: 2680 SSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPPQPTQPLQP 2739
Query: 515 GEAEPGAHAPDKEPE 529
+A+ GA + K+ E
Sbjct: 2740 -KAQAGAKSRPKKRE 2753
Score = 30.4 bits (67), Expect = 7.4
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 461 SSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAG----ALAQG---SSLEPGRPA--AP 511
S++ K+S +G+ G G ++P A G G A A+G ++LE G P P
Sbjct: 2299 SAKRRSRKTSKDTGEGKDGGTAGSEEPGAKARGRGRKPSAKAKGDRAATLEEGNPTDEVP 2358
Query: 512 SLPGEAEP----GAHAPDKEP 528
S P EP G+ EP
Sbjct: 2359 STPLALEPSSTPGSKKSPPEP 2379
Score = 30.0 bits (66), Expect = 9.7
Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 23/185 (12%)
Query: 327 GDMNAPPGSRESQTRKKVNHSRGTEV-SEPSPPVRDPEGVTQAPGVEPSNGLEKPARELN 385
G + APPGS R + + + + S PP D AP V + P +
Sbjct: 408 GVLQAPPGSPRPLDRPEGLREKNSVIRSLKRPPPAD------APTVRATRASPDPRAYVP 461
Query: 386 GSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGA 445
E P PRP + R P A + +L G + PG+ P G
Sbjct: 462 AKELLKPEADPRPCERAPRG--PAGPAAQQAAKLFG-------------LEPGRPPPTGP 506
Query: 446 TGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEP 505
F+L + + + + S ++ E+ KA + GA+ S+
Sbjct: 507 EHKWKPFELGNFAATQMAVLAAQHHHSRAEEEAAVVAASSSKKAYLD-PGAVLPRSAATC 565
Query: 506 GRPAA 510
GRP A
Sbjct: 566 GRPVA 570
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 49.3 bits (116), Expect = 2e-05
Identities = 49/164 (29%), Positives = 62/164 (37%), Gaps = 17/164 (10%)
Query: 386 GSEAATPRDSPR--------PGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAP 437
G T +D PR PGKP E+ + P P + GAP G Q G P
Sbjct: 207 GPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPL-GPPGQKGSIGAPGIPGMNGQKGE--P 263
Query: 438 GQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGAL 497
G A G G + E + + ++ GE +G G E +
Sbjct: 264 GLPGAVGQNG--IPGPKGEPGEQGEKGDAGENGPKGDTGE-KGDPGSSAAGIKGEPGESG 320
Query: 498 AQGSSLEPGRPAAPSLPG-EAEPGAHAPDKEPELGG--QEEGER 538
G EPG P P LPG + EPG P EP L G +GER
Sbjct: 321 RPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGER 364
Score = 38.5 bits (88), Expect = 0.027
Identities = 62/245 (25%), Positives = 89/245 (36%), Gaps = 47/245 (19%)
Query: 326 TGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARE-- 383
TG+ P S + R + EP P G+ PG++ G P E
Sbjct: 299 TGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLP-----GLPGLPGIKGEPGFIGPQGEPG 353
Query: 384 ---LNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSC----------A 430
L G++ P PG+ + + P A P Q +G P+GS A
Sbjct: 354 LPGLPGTKGERGEAGP-PGRGERGE--PGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGA 410
Query: 431 QGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAA 490
QG R PGQ+ QGAT D + + + + T + + G +G Q PK
Sbjct: 411 QGPRGPPGQKGDQGATEI---IDYNGNLHEALQRITTLTVTGPPG--PPGPQGLQGPKG- 464
Query: 491 PEGAGALAQGSSLEPGRPAAPSLPGE-AEPGAHAPDKEPELGGQEEGERDGLCGL--GNG 547
E G P P + GE G+ +P + G++ G GL GL NG
Sbjct: 465 -------------EQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGG--IGLPGLPGANG 509
Query: 548 CADRK 552
K
Sbjct: 510 MKGEK 514
Score = 30.0 bits (66), Expect = 9.7
Identities = 51/212 (24%), Positives = 66/212 (31%), Gaps = 26/212 (12%)
Query: 332 PPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVE-PSNGLEKPARELNGSEAA 390
PPG + Q K S G + ++ +G PG+ G+ P
Sbjct: 453 PPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGGIGLPGLPGANGMKG 512
Query: 391 TPRDSPRPGKPDERDIWPPA----QAPTSSQELAGAPEPQGSCAQGGRVAP-------GQ 439
DS PG I PP P G P P+G+ G P G+
Sbjct: 513 EKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKGERGE 572
Query: 440 RPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQ 499
+ A G G + L K DG G RG +K +G +
Sbjct: 573 KGAMGEPGPRGPYGLPG-----------KDGEPGLDG-FPGPRG-EKGDLGEKGEKGF-R 618
Query: 500 GSSLEPGRPAAPSLPGEAEPGAHAPDKEPELG 531
G E G P P L G P PD P G
Sbjct: 619 GVKGEKGEPGQPGLDGLDAPCQLGPDGLPMPG 650
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 49.3 bits (116), Expect = 2e-05
Identities = 49/164 (29%), Positives = 62/164 (37%), Gaps = 17/164 (10%)
Query: 386 GSEAATPRDSPR--------PGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAP 437
G T +D PR PGKP E+ + P P + GAP G Q G P
Sbjct: 207 GPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPL-GPPGQKGSIGAPGIPGMNGQKGE--P 263
Query: 438 GQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGAL 497
G A G G + E + + ++ GE +G G E +
Sbjct: 264 GLPGAVGQNG--IPGPKGEPGEQGEKGDAGENGPKGDTGE-KGDPGSSAAGIKGEPGESG 320
Query: 498 AQGSSLEPGRPAAPSLPG-EAEPGAHAPDKEPELGG--QEEGER 538
G EPG P P LPG + EPG P EP L G +GER
Sbjct: 321 RPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGER 364
Score = 38.5 bits (88), Expect = 0.027
Identities = 62/245 (25%), Positives = 89/245 (36%), Gaps = 47/245 (19%)
Query: 326 TGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARE-- 383
TG+ P S + R + EP P G+ PG++ G P E
Sbjct: 299 TGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLP-----GLPGLPGIKGEPGFIGPQGEPG 353
Query: 384 ---LNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSC----------A 430
L G++ P PG+ + + P A P Q +G P+GS A
Sbjct: 354 LPGLPGTKGERGEAGP-PGRGERGE--PGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGA 410
Query: 431 QGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAA 490
QG R PGQ+ QGAT D + + + + T + + G +G Q PK
Sbjct: 411 QGPRGPPGQKGDQGATEI---IDYNGNLHEALQRITTLTVTGPPG--PPGPQGLQGPKG- 464
Query: 491 PEGAGALAQGSSLEPGRPAAPSLPGE-AEPGAHAPDKEPELGGQEEGERDGLCGL--GNG 547
E G P P + GE G+ +P + G++ G GL GL NG
Sbjct: 465 -------------EQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGG--IGLPGLPGANG 509
Query: 548 CADRK 552
K
Sbjct: 510 MKGEK 514
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 48.5 bits (114), Expect = 3e-05
Identities = 67/229 (29%), Positives = 85/229 (37%), Gaps = 32/229 (13%)
Query: 318 KKYVYFQGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPP--VRDPEGVTQAPGVEPSN 375
K + F G N G R + + RG P+ P R P G+T PG + ++
Sbjct: 882 KGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-----PTGPRGERGPRGITGKPGPKGNS 936
Query: 376 GLEKPA-----RELNGSEAAT----PRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQ 426
G + PA R NG + T P+ P P D P + T Q G P P
Sbjct: 937 GGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPP 996
Query: 427 GSCA-QG--GRVAP-GQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSS-----ASDGE 477
G QG G P G+R G G + L + EGTK DG
Sbjct: 997 GVVGPQGPTGETGPMGERGHPGPPGPPGEQGL----PGLAGKEGTKGDPGPAGLPGKDG- 1051
Query: 478 SEGKRGRQKPKAAPEGAGALA-QGSSLEPGRPAAPSLPGEAEP-GAHAP 524
G RG + P GAL +G+ PG P PGE P GA P
Sbjct: 1052 PPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGP 1100
Score = 42.4 bits (98), Expect = 0.002
Identities = 52/208 (25%), Positives = 72/208 (34%), Gaps = 27/208 (12%)
Query: 356 SPPVRDPEGVTQAPGVEPSNGLEKPAREL-----NGSEAATPRDSPRPGKPDERDIWPPA 410
+P + P+G G++ GL PA + +G + + K D+ + PP
Sbjct: 1121 APGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPG 1180
Query: 411 QAPTSSQELAGAPEPQGSCAQGGRVAP----GQRPAQGATG----------TDLDFDLSS 456
PT Q G P P G+ + G GQ+ +G G L
Sbjct: 1181 --PTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGE 1238
Query: 457 DSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGAL-AQGSSLEPGRPAAPSLPG 515
E+ + G S G G P+ P G G A G EPG P LPG
Sbjct: 1239 KGETGDVGQMGPPGPPGPRGPS-GAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPG 1297
Query: 516 EAEPGAHAPDKEPELGGQEEGERDGLCG 543
E P P + E G + E G G
Sbjct: 1298 EGGP----PGPKGERGEKGESGPSGAAG 1321
Score = 41.2 bits (95), Expect = 0.004
Identities = 58/196 (29%), Positives = 73/196 (37%), Gaps = 25/196 (12%)
Query: 332 PPGSRESQTRKKVNHSRGTEVSEPSP---PVRD-PEGVTQAPGVEPSNGLEKPARELNGS 387
PPG Q + GT+ +P P P +D P G+ PG GL P L
Sbjct: 1019 PPGPPGEQGLPGLAGKEGTK-GDPGPAGLPGKDGPPGLRGFPG---DRGLPGPVGALGLK 1074
Query: 388 EAATPRDSPRP-GKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGG-RVAPGQRPAQGA 445
P P P G P ER PA A + G P PQG G + APG++ QG
Sbjct: 1075 GNEGPPGPPGPAGSPGERG---PAGA-AGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGP 1130
Query: 446 TGTD-LDFDLSSDSESSSESEGTKSSSSASDGE-----SEGKRGRQKPKAAPEGAGALAQ 499
G D L + + + GE S+G +G Q P P G Q
Sbjct: 1131 AGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGP-PGPTG----PQ 1185
Query: 500 GSSLEPGRPAAPSLPG 515
G +PG A PG
Sbjct: 1186 GPIGQPGPSGADGEPG 1201
Score = 39.7 bits (91), Expect = 0.012
Identities = 52/199 (26%), Positives = 66/199 (33%), Gaps = 21/199 (10%)
Query: 325 GTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPAREL 384
G PPG + R+ ++G E P P G APG +GL R +
Sbjct: 1387 GPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGL----RGI 1442
Query: 385 NG--SEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVA----PG 438
G E P SP P P P P L G P+G G + PG
Sbjct: 1443 PGPVGEQGLP-GSPGPDGP------PGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPG 1495
Query: 439 QRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALA 498
++ +G G S E T S G G PK A +G
Sbjct: 1496 EQGEKGDRGLP---GPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTG 1552
Query: 499 -QGSSLEPGRPAAPSLPGE 516
+G + PG P P PGE
Sbjct: 1553 PKGEAGHPGPPGPPGPPGE 1571
Score = 35.4 bits (80), Expect = 0.23
Identities = 53/215 (24%), Positives = 72/215 (33%), Gaps = 33/215 (15%)
Query: 324 QGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARE 383
QG + PPG R+ G++ + P P+G G+ G EK R
Sbjct: 591 QGPRGVQGPPGPAGKPGRRG---RAGSDGARGMPGQTGPKGDRGFDGLAGLPG-EKGHR- 645
Query: 384 LNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQ 443
P S PG P + D + L G P P+G G PG
Sbjct: 646 ------GDPGPSGPPGPPGD-DGERGDDGEVGPRGLPGEPGPRGLLGPKG--PPGPPGPP 696
Query: 444 GATGTDLDFDLSSDSESSSESEGTKSSSSASDGES--EGKRGRQKPKAAPEGAGALAQGS 501
G TG D + + GE G++G + P GA+
Sbjct: 697 GVTGMD--------------GQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPG 742
Query: 502 SLEP-GRPAAPSLPGEAEPGAHAPDKEP--ELGGQ 533
P G+P P +PG P H + P E GGQ
Sbjct: 743 EKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQ 777
Score = 33.5 bits (75), Expect = 0.88
Identities = 46/196 (23%), Positives = 62/196 (31%), Gaps = 46/196 (23%)
Query: 351 EVSEPSPPVRDPEGVTQAPGVE----PSNGLEKPARELNGSEAATPRDSPRPGKPDERDI 406
++ P PP P G + APG + P G+ P E P ++ PG P E
Sbjct: 1247 QMGPPGPP--GPRGPSGAPGADGPQGPPGGIGNPGAV---GEKGEPGEAGEPGLPGE--- 1298
Query: 407 WPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEG 466
G P P+G + G P GA G + +G
Sbjct: 1299 -------------GGPPGPKGERGEKGESGPS-----GAAGPP-------GPKGPPGDDG 1333
Query: 467 TKSSSSASDGESEGKRGRQKPKAAPEGAGALA----QGSSLEPGRPAAPSLPGEAEPGAH 522
K S G G P P AG +G EPG+ +P GE P
Sbjct: 1334 PKGSPGPV-----GFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGP 1388
Query: 523 APDKEPELGGQEEGER 538
+ P EG +
Sbjct: 1389 PGKRGPPGPAGPEGRQ 1404
Score = 30.0 bits (66), Expect = 9.7
Identities = 35/130 (26%), Positives = 46/130 (35%), Gaps = 19/130 (14%)
Query: 745 PDREGVPPTALFHPMPVLPKAQPGPEVRIYDSNTGKLIRTGARGPPAPSSSLPIRQEPSS 804
P E P HP P P + G G + G +G P P+ LP + P
Sbjct: 1004 PTGETGPMGERGHPGPPGPPGEQGLP--------GLAGKEGTKGDPGPAG-LPGKDGPPG 1054
Query: 805 FRWTTSLEKAATTATARRGGLRSRRRSP-------SPGSQGPAGSGRSGHLRPARGARQG 857
R A GL+ P SPG +GPAG+ + P R QG
Sbjct: 1055 LRGFPGDRGLPGPVGAL--GLKGNEGPPGPPGPAGSPGERGPAGAAGPIGI-PGRPGPQG 1111
Query: 858 AGGPEATRGS 867
GP +G+
Sbjct: 1112 PPGPAGEKGA 1121
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 48.5 bits (114), Expect = 3e-05
Identities = 56/197 (28%), Positives = 67/197 (34%), Gaps = 29/197 (14%)
Query: 334 GSRESQTRKKVNHSRGTEVSE--PSPP-------VRDPEGVTQAPGVEPSNGLEKPAREL 384
GSR K GT + P PP V G+T PGV E+ REL
Sbjct: 469 GSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIREL 528
Query: 385 NGSE-----AATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQ-GGRVAPG 438
G A +P P PA P G P P GS G R PG
Sbjct: 529 CGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPP-------GPPGPPGSIGHPGARGPPG 581
Query: 439 QRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALA 498
R G G + G K ++ A EG +G Q P+ P +
Sbjct: 582 YRGPTGELG-------DPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQ 634
Query: 499 QGSSLEPGRPAAPSLPG 515
G+ EPG P P LPG
Sbjct: 635 DGAPGEPGPPGDPGLPG 651
Score = 38.9 bits (89), Expect = 0.021
Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 15/185 (8%)
Query: 362 PEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSP-RPGKPDERDIWPPAQAPTSSQELA 420
P G PG +G++ A P+ +P +PGKP E + P
Sbjct: 33 PPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGL-PGLPGVDGLTGRD 91
Query: 421 GAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEG 480
G P P+G+ + G + P P G G ++ S G G
Sbjct: 92 GPPGPKGAPGERGSLGPPGPPGLGGKGLP---GPPGEAGVSGPPGGIGLRGPPGPSGLPG 148
Query: 481 KRGRQKPKAAPEGAGALAQGSS-------LEPGRPAAPSLPGEAEPGAHAPDKEPELGGQ 533
G P P G L +G++ PG P P +PG P + ++ E+G
Sbjct: 149 LPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGY-KGEQGEVG-- 205
Query: 534 EEGER 538
++GE+
Sbjct: 206 KDGEK 210
Score = 35.0 bits (79), Expect = 0.30
Identities = 45/167 (26%), Positives = 58/167 (34%), Gaps = 39/167 (23%)
Query: 360 RDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAP--TSSQ 417
R P G+ APG G E+ G + D RPG + P+ P
Sbjct: 252 RGPPGIPGAPGKAGDRG-ERGPEGFRGPKG----DLGRPGPKGTPGVAGPSGEPGMPGKD 306
Query: 418 ELAGAPEPQGSCAQGGRV-APGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDG 476
G P G + GR APG++ G G + S G
Sbjct: 307 GQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLP--------------------GRAGSKG 346
Query: 477 ESEGKRGRQKPKAAPEGAGALAQ-GSSLEPGRPAAPSLPGEAEPGAH 522
E +G+RGR AG L + G S EPG P +PGE H
Sbjct: 347 E-KGERGR---------AGELGEAGPSGEPGVPGDAGMPGERGEAGH 383
>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 1 [Homo sapiens]
Length = 1099
Score = 48.1 bits (113), Expect = 3e-05
Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 30/216 (13%)
Query: 378 EKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAP 437
EK LN A P+ + KP+E + PA+ P + A P+ +G + P
Sbjct: 690 EKEEESLNQGARAQPQ-AKAESKPEEEE---PAKLPAVTVTPAPVPDIKGDQKEN----P 741
Query: 438 GQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGAL 497
G + + +++ES+ E G + +A +GE+E K G + PEG G
Sbjct: 742 GGQ------------EDVAEAESTGEMPG-EEGETAGEGETEEKSGGE---TQPEGEGET 785
Query: 498 ---AQGSSLEPGRPAAPS--LPGEAEPGAHAPDKEPELGGQEEGERDGLCGLGNGCADRK 552
+G E A GE E HA D E + G + E E L +G A
Sbjct: 786 ETQGKGEECEDENEAEGKGDNEGEDEGEIHAEDGEMK-GNEGETESQELSAENHGEAKND 844
Query: 553 EAETESQNSELSGVTAGESLDQSMEEEEEEDTDEDD 588
E E G + E ++ +EEEEE+ ++++
Sbjct: 845 EKGVEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEE 880
>gi|157738619 smoothelin-like 1 [Homo sapiens]
Length = 512
Score = 48.1 bits (113), Expect = 3e-05
Identities = 61/254 (24%), Positives = 90/254 (35%), Gaps = 36/254 (14%)
Query: 334 GSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEA-ATP 392
GS+E RK+ S E E + E EK A+ +G +A A
Sbjct: 125 GSQEMTGRKEETKSEPKEAEEKESTLAS----------EKQKAEEKEAKPESGQKADAND 174
Query: 393 RDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDLDF 452
RD P P E + A T+SQE G R P + AT D
Sbjct: 175 RDKPEPKATVEEE-----DAKTASQEETGQ-----------RKECSTEPKEKAT----DE 214
Query: 453 DLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPS 512
+ ++S+ + + K+ DG+ E K G ++ A E A + P
Sbjct: 215 EAKAESQKAVVEDEAKAEPKEPDGKEEAKHGAKEEADAKEEAEDAEEAEPGSPSEEQEQD 274
Query: 513 LPGEAEPGA----HAPDKEPELGGQEEGERDGLCGLGNGCADRKEAETESQNSELSGVTA 568
+ E E GA +P++ PE EG GLG C + + S S V
Sbjct: 275 VEKEPEGGAGVIPSSPEEWPE-SPTGEGHNLSTDGLGPDCVASGQTSPSASESSPSDVPQ 333
Query: 569 GESLDQSMEEEEEE 582
S E++E+
Sbjct: 334 SPPESPSSGEKKEK 347
Score = 39.7 bits (91), Expect = 0.012
Identities = 60/261 (22%), Positives = 95/261 (36%), Gaps = 46/261 (17%)
Query: 338 SQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVE--PSNGLEKPARELNGSEAATPRDS 395
++ R+K+ G ++SE +G T +P + +G PA E G+ +
Sbjct: 13 AEAREKMEQKEG-KLSE--------DGTTVSPAADNPEMSGGGAPAEETKGTAGKAINEG 63
Query: 396 PRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLS 455
P PT S + AP A+ G A Q A G ++
Sbjct: 64 P----------------PTESGKQEKAP------AEDGMSAELQGEANGLDEVKVESQRE 101
Query: 456 SDSESSSESE-----GTKSSSSASDGESEGKRGRQK--PKAAPEGAGALAQGSSLEPGRP 508
+ + +E+E G K ++ E G++ K PK A E LA +
Sbjct: 102 AGGKEDAEAELKKEDGEKEETTVGSQEMTGRKEETKSEPKEAEEKESTLASEKQKAEEKE 161
Query: 509 AAPSLPGEAEPGAHAPDK-EPELGGQEEGERDGLCGLGNGCADRKEAETESQNSELSGVT 567
A P +A+ A+ DK EP+ +EE D RKE TE +
Sbjct: 162 AKPESGQKAD--ANDRDKPEPKATVEEE---DAKTASQEETGQRKECSTEPKEKATDEEA 216
Query: 568 AGESLDQSMEEEEEEDTDEDD 588
ES +E+E + + E D
Sbjct: 217 KAESQKAVVEDEAKAEPKEPD 237
Score = 38.1 bits (87), Expect = 0.036
Identities = 62/276 (22%), Positives = 101/276 (36%), Gaps = 63/276 (22%)
Query: 331 APPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEK----PARELNG 386
AP + K +N TE + + + G +NGL++ RE G
Sbjct: 47 APAEETKGTAGKAINEGPPTESGKQEKAPAEDGMSAELQG--EANGLDEVKVESQREAGG 104
Query: 387 SEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGAT 446
E A G+ +E + SQE+ G E S P + + +T
Sbjct: 105 KEDAEAELKKEDGEKEETTV--------GSQEMTGRKEETKS-------EPKEAEEKEST 149
Query: 447 GTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGS----- 501
L+S+ + + E E S +D R + +PKA E A
Sbjct: 150 -------LASEKQKAEEKEAKPESGQKADAND---RDKPEPKATVEEEDAKTASQEETGQ 199
Query: 502 ----SLEPGRPA------APSLPGEAEPGAHAPDKEPELGGQEEGERDGLCGLGNGCADR 551
S EP A A S E A A KEP+ G+EE + +G +
Sbjct: 200 RKECSTEPKEKATDEEAKAESQKAVVEDEAKAEPKEPD--GKEEAK--------HGAKEE 249
Query: 552 KEAETESQNSELSGVTAGESLDQSMEEEEEEDTDED 587
+A+ E++++E E+ S EE+E+D +++
Sbjct: 250 ADAKEEAEDAE-------EAEPGSPSEEQEQDVEKE 278
Score = 30.4 bits (67), Expect = 7.4
Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 18/177 (10%)
Query: 328 DMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGS 387
+ + P + + K + E ++P+G +A +G ++ A +
Sbjct: 202 ECSTEPKEKATDEEAKAESQKAVVEDEAKAEPKEPDGKEEA-----KHGAKEEADAKEEA 256
Query: 388 EAATPRDSPRPGKPDERDIWPPAQA-----PTSSQELAGAPEPQGSCAQGGRVAPGQRPA 442
E A + P + E+D+ + P+S +E +P +G + P A
Sbjct: 257 EDAEEAEPGSPSEEQEQDVEKEPEGGAGVIPSSPEEWPESPTGEGHNLSTDGLGP-DCVA 315
Query: 443 QGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQ 499
G T S SESS S S GE + K ++ A G AQ
Sbjct: 316 SGQTSP-------SASESSPSDVPQSPPESPSSGEKKEKAPERRVSAPARPRGPRAQ 365
>gi|83921609 hypothetical protein LOC127254 [Homo sapiens]
Length = 1530
Score = 48.1 bits (113), Expect = 3e-05
Identities = 72/298 (24%), Positives = 109/298 (36%), Gaps = 48/298 (16%)
Query: 295 DSMVCIIDDREDVWKFAPNLITVKKYVYFQGTGDMNAPPGSRESQTRKKVNHSRGTEVSE 354
+++V I + K N+ ++K +G G+ + E + R++++ + E
Sbjct: 1151 ETVVPIFEATPGFEKSLENITALRK----EGGGERLSEARDTEHKDREELSSRENRALKE 1206
Query: 355 PSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPT 414
+D EG AP EP+ ++ P + P G+ +E A+
Sbjct: 1207 GHR--QDGEGALAAPEAEPAGKVQAPEGLI-----------PATGQAEEL----AAKDHD 1249
Query: 415 SSQELAGAPEPQGSCAQGGRVA-------PGQRPAQGATGTDLDFDLSSDSESSSESEGT 467
S L G E QG R P D D + D E + E+E
Sbjct: 1250 SCAGLEGRAEGQGGVDVVLRTQEAVAEEDPIMAEKFREEAVDEDPEEEEDKECTLETEAM 1309
Query: 468 KSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPS-LPGEAEPGAHAPDK 526
+ +S DG+ EG+ QK EG G GR A L G E A ++
Sbjct: 1310 QDRNSEGDGDMEGEGNTQK----NEGMGG---------GRVVAVEVLHGGGETAETAAEE 1356
Query: 527 EPELGGQEEGERDGLCGLGNGCADRKEAETESQNSELSGVTAG------ESLDQSMEE 578
L G E E + + +D E ET Q EL G TA E L +S EE
Sbjct: 1357 REVLAGSETAEEKTIANKASSFSDVAEEETWHQQDELVGKTAAAGKVVVEELARSGEE 1414
Score = 32.0 bits (71), Expect = 2.5
Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 35/156 (22%)
Query: 437 PGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGA 496
PGQ + L ++ D E E +G KS+ +G+++ +
Sbjct: 481 PGQEVLEDDQENTLKYEYEEDFEVDEEKQGEKSNE---EGQADVQMN------------- 524
Query: 497 LAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGE-RDGLCGLGNGCA------ 549
P P + + P+KE E Q+ + RD + +GC+
Sbjct: 525 ------------GIPQSPLDDKKDNLDPEKESETSSQKAPDARDNVKDENDGCSESELEE 572
Query: 550 DRKEAETESQNSELSGVTAGESLDQSMEEEEEEDTD 585
D+++ +T S S S + +S D+S + E TD
Sbjct: 573 DKQDMKTASSTSSRSHPYSSDSEDESAVGDREAHTD 608
>gi|5803080 macrophage receptor with collagenous structure [Homo
sapiens]
Length = 520
Score = 47.4 bits (111), Expect = 6e-05
Identities = 54/174 (31%), Positives = 64/174 (36%), Gaps = 34/174 (19%)
Query: 364 GVTQAPGVEPSNGLEKPARELNGSEAATPRDSPR--PGKPDERDIWPPAQAPTSSQELAG 421
G+ APG P EK A+ G + AT P+ PG E + P AP Q G
Sbjct: 163 GMPGAPG-PPGPPAEKGAKGAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAP-GKQGATG 220
Query: 422 APEPQG---SCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGES 478
P PQG S GG + P +G TGT E S D
Sbjct: 221 TPGPQGEKGSKGDGGLIGP-----KGETGT------------KGEKGDLGLPGSKGDRGM 263
Query: 479 EGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGG 532
+G G P A QGS + GRP P L G PGA +P L G
Sbjct: 264 KGDAGVMGPPGA--------QGSKGDFGRPGPPGLAG--FPGAKGDQGQPGLQG 307
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 47.4 bits (111), Expect = 6e-05
Identities = 55/213 (25%), Positives = 79/213 (37%), Gaps = 25/213 (11%)
Query: 331 APPGSRESQTRKKVNHSRGTEVSEPSPP-VRDPEGVTQAPGVEPSN--GLEKPARELNGS 387
A P ++ S K + GT PP P P P+ G EKP+ E G
Sbjct: 329 AKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGP 388
Query: 388 EAA--------TPRDSPRPGKPDERDIWPP---AQAPTSSQELAGAPEPQGSCAQGGRVA 436
+A TP P P KP + + P AQ P Q A AP P + Q +
Sbjct: 389 KALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQP-GLQSPAKAPGPTKTPVQ--QPG 445
Query: 437 PGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGA 496
PG+ PAQ A + ++ S+ G G ++ P P A
Sbjct: 446 PGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAK------PPPQQPGSAKP 499
Query: 497 LAQ--GSSLEPGRPAAPSLPGEAEPGAHAPDKE 527
+Q GS+ P + P+ P +PG+ P +
Sbjct: 500 PSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQ 532
Score = 35.8 bits (81), Expect = 0.18
Identities = 47/188 (25%), Positives = 70/188 (37%), Gaps = 23/188 (12%)
Query: 357 PPVRDPEGVTQAPG-----VEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWP--- 408
PP + P PG +PS GL KP + G+ P P KP + + P
Sbjct: 314 PPAQQPGHEKSQPGPAKPPAQPS-GLTKPLAQQPGT-VKPPVQPPGTTKPPAQPLGPAKP 371
Query: 409 PAQAPTSSQELAGAPEPQGSCAQGG-------RVAPGQRPAQGATGTDLDFDLSSDSESS 461
PAQ S + + P P+ G + P + P Q GT +S
Sbjct: 372 PAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQ-QVGTPKPLAQQPGLQSP 430
Query: 462 SESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPG- 520
+++ G + G GK Q+ A P A G + P + P+ P +PG
Sbjct: 431 AKAPGPTKTPVQQPGP--GKIPAQQ--AGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGP 486
Query: 521 AHAPDKEP 528
A P ++P
Sbjct: 487 AKPPPQQP 494
Score = 34.3 bits (77), Expect = 0.51
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 350 TEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERD---I 406
+++ P+ P G + P +P G KP + GS P+ P P KP +
Sbjct: 471 SQLPGPAKPPPQQPGPAKPPPQQP--GSAKPPSQQPGSTKPPPQQ-PGPAKPSPQQPGST 527
Query: 407 WPPAQAPTSSQELAGAPEPQGSCAQ 431
PP+Q P S++ A P P AQ
Sbjct: 528 KPPSQQPGSAKPSAQQPSPAKPSAQ 552
Score = 30.8 bits (68), Expect = 5.7
Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 25/217 (11%)
Query: 329 MNAPPGSRESQTRKKVNHSRGTEVSEPS-PPVRDPEGVTQAPGVEPSNGLEKPARELNGS 387
++ P ++ Q + + S+ EPS P +D V +P + KP +L S
Sbjct: 712 LHGSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDKAPVADDKPKQPK--MVKPTTDLVSS 769
Query: 388 EAATPRD---SPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQG 444
+AT + S + E PP + ++ + P + + P RPA
Sbjct: 770 SSATTKPDIPSSKVQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIP--RPAS- 826
Query: 445 ATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLE 504
D + S SSES+G K + + + +++PK A +
Sbjct: 827 ------DSKIISHPGPSSESKGQK--------QVDPVQKKEEPKKAQTKMSPKPDAKPMP 872
Query: 505 PGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDGL 541
G P P A P + P+ QE+ R L
Sbjct: 873 KGSPTPPGPRPTAGQTVPTPQQSPK--PQEQSRRFSL 907
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 47.4 bits (111), Expect = 6e-05
Identities = 55/213 (25%), Positives = 79/213 (37%), Gaps = 25/213 (11%)
Query: 331 APPGSRESQTRKKVNHSRGTEVSEPSPP-VRDPEGVTQAPGVEPSN--GLEKPARELNGS 387
A P ++ S K + GT PP P P P+ G EKP+ E G
Sbjct: 329 AKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGP 388
Query: 388 EAA--------TPRDSPRPGKPDERDIWPP---AQAPTSSQELAGAPEPQGSCAQGGRVA 436
+A TP P P KP + + P AQ P Q A AP P + Q +
Sbjct: 389 KALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQP-GLQSPAKAPGPTKTPVQ--QPG 445
Query: 437 PGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGA 496
PG+ PAQ A + ++ S+ G G ++ P P A
Sbjct: 446 PGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAK------PPPQQPGSAKP 499
Query: 497 LAQ--GSSLEPGRPAAPSLPGEAEPGAHAPDKE 527
+Q GS+ P + P+ P +PG+ P +
Sbjct: 500 PSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQ 532
Score = 35.8 bits (81), Expect = 0.18
Identities = 47/188 (25%), Positives = 70/188 (37%), Gaps = 23/188 (12%)
Query: 357 PPVRDPEGVTQAPG-----VEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWP--- 408
PP + P PG +PS GL KP + G+ P P KP + + P
Sbjct: 314 PPAQQPGHEKSQPGPAKPPAQPS-GLTKPLAQQPGT-VKPPVQPPGTTKPPAQPLGPAKP 371
Query: 409 PAQAPTSSQELAGAPEPQGSCAQGG-------RVAPGQRPAQGATGTDLDFDLSSDSESS 461
PAQ S + + P P+ G + P + P Q GT +S
Sbjct: 372 PAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQ-QVGTPKPLAQQPGLQSP 430
Query: 462 SESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPG- 520
+++ G + G GK Q+ A P A G + P + P+ P +PG
Sbjct: 431 AKAPGPTKTPVQQPGP--GKIPAQQ--AGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGP 486
Query: 521 AHAPDKEP 528
A P ++P
Sbjct: 487 AKPPPQQP 494
Score = 34.3 bits (77), Expect = 0.51
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 350 TEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERD---I 406
+++ P+ P G + P +P G KP + GS P+ P P KP +
Sbjct: 471 SQLPGPAKPPPQQPGPAKPPPQQP--GSAKPPSQQPGSTKPPPQQ-PGPAKPSPQQPGST 527
Query: 407 WPPAQAPTSSQELAGAPEPQGSCAQ 431
PP+Q P S++ A P P AQ
Sbjct: 528 KPPSQQPGSAKPSAQQPSPAKPSAQ 552
Score = 30.8 bits (68), Expect = 5.7
Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 25/217 (11%)
Query: 329 MNAPPGSRESQTRKKVNHSRGTEVSEPS-PPVRDPEGVTQAPGVEPSNGLEKPARELNGS 387
++ P ++ Q + + S+ EPS P +D V +P + KP +L S
Sbjct: 712 LHGSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDKAPVADDKPKQPK--MVKPTTDLVSS 769
Query: 388 EAATPRD---SPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQG 444
+AT + S + E PP + ++ + P + + P RPA
Sbjct: 770 SSATTKPDIPSSKVQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIP--RPAS- 826
Query: 445 ATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLE 504
D + S SSES+G K + + + +++PK A +
Sbjct: 827 ------DSKIISHPGPSSESKGQK--------QVDPVQKKEEPKKAQTKMSPKPDAKPMP 872
Query: 505 PGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDGL 541
G P P A P + P+ QE+ R L
Sbjct: 873 KGSPTPPGPRPTAGQTVPTPQQSPK--PQEQSRRFSL 907
>gi|219555649 dullard homolog [Homo sapiens]
Length = 244
Score = 47.4 bits (111), Expect = 6e-05
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 174 QQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKG------IFHFQLGRGEPMLHTRLRP 227
+ RL + ++ +L++DLD+TLIH+ + + + I + + RP
Sbjct: 53 RNRLAQVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRP 112
Query: 228 HCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNL 287
H FLE +++ YEL VFT +Y +A LD + + R R C
Sbjct: 113 HVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYY-RQHCTLELGSYIKD 171
Query: 288 RNLFPCGDSMVCIIDDREDVWKFAP-NLITVKKY 320
++ S + I+D+ ++ P N I +K +
Sbjct: 172 LSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSW 205
>gi|31542547 dullard homolog [Homo sapiens]
Length = 244
Score = 47.4 bits (111), Expect = 6e-05
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 174 QQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKG------IFHFQLGRGEPMLHTRLRP 227
+ RL + ++ +L++DLD+TLIH+ + + + I + + RP
Sbjct: 53 RNRLAQVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRP 112
Query: 228 HCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNL 287
H FLE +++ YEL VFT +Y +A LD + + R R C
Sbjct: 113 HVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYY-RQHCTLELGSYIKD 171
Query: 288 RNLFPCGDSMVCIIDDREDVWKFAP-NLITVKKY 320
++ S + I+D+ ++ P N I +K +
Sbjct: 172 LSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSW 205
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.0 bits (110), Expect = 8e-05
Identities = 60/197 (30%), Positives = 68/197 (34%), Gaps = 30/197 (15%)
Query: 360 RDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRP-GKP-DERDIWPPAQA----P 413
R P G APG + G E S PR P P GKP D+ + P +A P
Sbjct: 209 RGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP 268
Query: 414 TSSQELAGAPEPQG-SCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSS 472
Q G P G +G R PG A+G G ES S E
Sbjct: 269 PGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAP-----GVKGESGSPGENGSPGPM 323
Query: 473 ASDGESEGKRGRQKPKAAPEGAGALAQ----------GSSLEPGRPAAPSLPGEAEP--- 519
G G+RGR P A G Q G + PG P AP GEA P
Sbjct: 324 GPRG-LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 382
Query: 520 ----GAHAPDKEPELGG 532
GA P EP G
Sbjct: 383 RGPEGAQGPRGEPGTPG 399
Score = 42.4 bits (98), Expect = 0.002
Identities = 59/236 (25%), Positives = 75/236 (31%), Gaps = 29/236 (12%)
Query: 325 GTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPAREL 384
G P G+ Q V +G ++ P G G SNG P
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 920
Query: 385 NGSEAATPR----DSPRPGKPDERDIWPPAQAPTSSQE--------LAGAPEPQGSCAQG 432
S P+ DS PG+ E + PA P E G P PQG Q
Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 980
Query: 433 GRVA-PGQRPAQGATGTDLDFDLSSDSESSSESEGTKS----------SSSASDGESEGK 481
G V PGQR +G G + + + G + + A + EG
Sbjct: 981 GIVGLPGQRGERGFPGLPGPSG-EPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS 1039
Query: 482 RGRQKPKAAPEGAGALAQ----GSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQ 533
G P AG G+ PG P P PG A P D+ E G Q
Sbjct: 1040 PGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR-GEAGAQ 1094
Score = 40.0 bits (92), Expect = 0.009
Identities = 68/252 (26%), Positives = 85/252 (33%), Gaps = 40/252 (15%)
Query: 324 QGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARE 383
QG + PG R + RG +V E + PEG APG + GL P
Sbjct: 743 QGPPGLQGMPGERGAAGIAGPKGDRG-DVGE-----KGPEG---APGKDGGRGLTGPIGP 793
Query: 384 -----LNGSEAATPRDSPRP-----GKPDER-DIWPPAQA----PTSSQELAGAPEPQGS 428
NG + P G P ER + PP A P + GA QG
Sbjct: 794 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGE 853
Query: 429 CAQGGRV-APGQRPAQGATGTDLDFDLSSDSESSSESE---GTKSSSSASDGESEGKRGR 484
Q G APG + GA G ++ + T +A G G
Sbjct: 854 AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGN 913
Query: 485 QKPKAAPEGAGAL----AQGSSLEPGRPAAPSLPGEA-------EPGAHAPD-KEPELGG 532
P P +G A+G S PGR P L G A EPG P E G
Sbjct: 914 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGP 973
Query: 533 QEEGERDGLCGL 544
Q + G+ GL
Sbjct: 974 QGLAGQRGIVGL 985
Score = 39.7 bits (91), Expect = 0.012
Identities = 57/216 (26%), Positives = 74/216 (34%), Gaps = 37/216 (17%)
Query: 347 SRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDI 406
++G +P P G + PG + G + A P + PG P R
Sbjct: 388 AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK--------GSAGAPGIAGAPGFPGPRG- 438
Query: 407 WPP----AQAPTSSQELAGAPEPQG-SCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESS 461
PP A P + G P G QG + PG QGA G + +
Sbjct: 439 -PPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGP-----AGEEGKRG 492
Query: 462 SESEGTKSSSSASDGES--------EGKRGRQKPKAAP--EGAGALA--QGSSLEPGRPA 509
+ E GE G+ G PK AP G LA +G++ +PGRP
Sbjct: 493 ARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPG 552
Query: 510 APSLPG----EAEPGAHAPD-KEPELGGQEEGERDG 540
P LPG PG P K G E R G
Sbjct: 553 EPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG 588
Score = 38.5 bits (88), Expect = 0.027
Identities = 38/115 (33%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 760 PVLPKAQPGPEVRIYDSN-TGKLIRTGARGPPAPSSSLPIRQEP-----SSFRWTTSLEK 813
P+ P+ PGP + D GK + G RGPP P + P R L+
Sbjct: 238 PMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDG 297
Query: 814 AATTATARRGGLRSRRRSP----SPGSQGPAG-SGRSGHLRP--ARGARQGAGGP 861
A A A G++ SP SPG GP G G G P A GAR G P
Sbjct: 298 AKGEAGA--PGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQP 350
Score = 34.7 bits (78), Expect = 0.39
Identities = 51/185 (27%), Positives = 61/185 (32%), Gaps = 22/185 (11%)
Query: 354 EPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRP----GKPDERDIWPP 409
E SP P G A GV+ G + A P SP P GK +R
Sbjct: 1037 EGSPGADGPPGRDGAAGVKGDRG---ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGE-AG 1092
Query: 410 AQAPTSSQELAGA---PEPQGSCAQGGRVA-PGQRPAQGATG-TDLDFDLSSDSESSSES 464
AQ P AGA PQG G PG+R +G G T L S +
Sbjct: 1093 AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQG 1152
Query: 465 EGTKSSSSASDGE--------SEGKRGRQKPKAAPEGAGALAQ-GSSLEPGRPAAPSLPG 515
+ S G +G G P P G + G + PG P P PG
Sbjct: 1153 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG 1212
Query: 516 EAEPG 520
PG
Sbjct: 1213 PPGPG 1217
Score = 32.7 bits (73), Expect = 1.5
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 758 PMPVLPKAQPGPEVRIYDS-------NTGKLIRTGARGPPAPSSSLPIRQEPSSFRWTTS 810
P P+ P+ PG R + N G+ G GP P+ P +
Sbjct: 320 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGA-----K 374
Query: 811 LEKAATTATARRGGLRSRRRSPSPGSQGPAGSGRSGHLRPARGARQGAGGP 861
E T A G R +PGS GPAG+ + GA+ AG P
Sbjct: 375 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAP 425
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.0 bits (110), Expect = 8e-05
Identities = 60/197 (30%), Positives = 68/197 (34%), Gaps = 30/197 (15%)
Query: 360 RDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRP-GKP-DERDIWPPAQA----P 413
R P G APG + G E S PR P P GKP D+ + P +A P
Sbjct: 140 RGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP 199
Query: 414 TSSQELAGAPEPQG-SCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSS 472
Q G P G +G R PG A+G G ES S E
Sbjct: 200 PGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAP-----GVKGESGSPGENGSPGPM 254
Query: 473 ASDGESEGKRGRQKPKAAPEGAGALAQ----------GSSLEPGRPAAPSLPGEAEP--- 519
G G+RGR P A G Q G + PG P AP GEA P
Sbjct: 255 GPRG-LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 313
Query: 520 ----GAHAPDKEPELGG 532
GA P EP G
Sbjct: 314 RGPEGAQGPRGEPGTPG 330
Score = 42.4 bits (98), Expect = 0.002
Identities = 59/236 (25%), Positives = 75/236 (31%), Gaps = 29/236 (12%)
Query: 325 GTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPAREL 384
G P G+ Q V +G ++ P G G SNG P
Sbjct: 792 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 851
Query: 385 NGSEAATPR----DSPRPGKPDERDIWPPAQAPTSSQE--------LAGAPEPQGSCAQG 432
S P+ DS PG+ E + PA P E G P PQG Q
Sbjct: 852 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 911
Query: 433 GRVA-PGQRPAQGATGTDLDFDLSSDSESSSESEGTKS----------SSSASDGESEGK 481
G V PGQR +G G + + + G + + A + EG
Sbjct: 912 GIVGLPGQRGERGFPGLPGPSG-EPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS 970
Query: 482 RGRQKPKAAPEGAGALAQ----GSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQ 533
G P AG G+ PG P P PG A P D+ E G Q
Sbjct: 971 PGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR-GEAGAQ 1025
Score = 40.0 bits (92), Expect = 0.009
Identities = 68/252 (26%), Positives = 85/252 (33%), Gaps = 40/252 (15%)
Query: 324 QGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARE 383
QG + PG R + RG +V E + PEG APG + GL P
Sbjct: 674 QGPPGLQGMPGERGAAGIAGPKGDRG-DVGE-----KGPEG---APGKDGGRGLTGPIGP 724
Query: 384 -----LNGSEAATPRDSPRP-----GKPDER-DIWPPAQA----PTSSQELAGAPEPQGS 428
NG + P G P ER + PP A P + GA QG
Sbjct: 725 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGE 784
Query: 429 CAQGGRV-APGQRPAQGATGTDLDFDLSSDSESSSESE---GTKSSSSASDGESEGKRGR 484
Q G APG + GA G ++ + T +A G G
Sbjct: 785 AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGN 844
Query: 485 QKPKAAPEGAGAL----AQGSSLEPGRPAAPSLPGEA-------EPGAHAPD-KEPELGG 532
P P +G A+G S PGR P L G A EPG P E G
Sbjct: 845 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGP 904
Query: 533 QEEGERDGLCGL 544
Q + G+ GL
Sbjct: 905 QGLAGQRGIVGL 916
Score = 39.7 bits (91), Expect = 0.012
Identities = 57/216 (26%), Positives = 74/216 (34%), Gaps = 37/216 (17%)
Query: 347 SRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDI 406
++G +P P G + PG + G + A P + PG P R
Sbjct: 319 AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK--------GSAGAPGIAGAPGFPGPRG- 369
Query: 407 WPP----AQAPTSSQELAGAPEPQG-SCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESS 461
PP A P + G P G QG + PG QGA G + +
Sbjct: 370 -PPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGP-----AGEEGKRG 423
Query: 462 SESEGTKSSSSASDGES--------EGKRGRQKPKAAP--EGAGALA--QGSSLEPGRPA 509
+ E GE G+ G PK AP G LA +G++ +PGRP
Sbjct: 424 ARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPG 483
Query: 510 APSLPG----EAEPGAHAPD-KEPELGGQEEGERDG 540
P LPG PG P K G E R G
Sbjct: 484 EPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG 519
Score = 38.5 bits (88), Expect = 0.027
Identities = 38/115 (33%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 760 PVLPKAQPGPEVRIYDSN-TGKLIRTGARGPPAPSSSLPIRQEP-----SSFRWTTSLEK 813
P+ P+ PGP + D GK + G RGPP P + P R L+
Sbjct: 169 PMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDG 228
Query: 814 AATTATARRGGLRSRRRSP----SPGSQGPAG-SGRSGHLRP--ARGARQGAGGP 861
A A A G++ SP SPG GP G G G P A GAR G P
Sbjct: 229 AKGEAGA--PGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQP 281
Score = 34.7 bits (78), Expect = 0.39
Identities = 51/185 (27%), Positives = 61/185 (32%), Gaps = 22/185 (11%)
Query: 354 EPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRP----GKPDERDIWPP 409
E SP P G A GV+ G + A P SP P GK +R
Sbjct: 968 EGSPGADGPPGRDGAAGVKGDRG---ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGE-AG 1023
Query: 410 AQAPTSSQELAGA---PEPQGSCAQGGRVA-PGQRPAQGATG-TDLDFDLSSDSESSSES 464
AQ P AGA PQG G PG+R +G G T L S +
Sbjct: 1024 AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQG 1083
Query: 465 EGTKSSSSASDGE--------SEGKRGRQKPKAAPEGAGALAQ-GSSLEPGRPAAPSLPG 515
+ S G +G G P P G + G + PG P P PG
Sbjct: 1084 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG 1143
Query: 516 EAEPG 520
PG
Sbjct: 1144 PPGPG 1148
Score = 32.7 bits (73), Expect = 1.5
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 758 PMPVLPKAQPGPEVRIYDS-------NTGKLIRTGARGPPAPSSSLPIRQEPSSFRWTTS 810
P P+ P+ PG R + N G+ G GP P+ P +
Sbjct: 251 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGA-----K 305
Query: 811 LEKAATTATARRGGLRSRRRSPSPGSQGPAGSGRSGHLRPARGARQGAGGP 861
E T A G R +PGS GPAG+ + GA+ AG P
Sbjct: 306 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAP 356
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 46.6 bits (109), Expect = 1e-04
Identities = 68/260 (26%), Positives = 84/260 (32%), Gaps = 43/260 (16%)
Query: 325 GTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPP----VRDPEGVTQAPGVEPSNGLEKP 380
G M PG S + S+G E P PP R GV PG + ++G
Sbjct: 534 GMRGMPGSPGGPGSDGKPGPPGSQG-ESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK 592
Query: 381 ARELNG------------SEAATPRDSPRPGKP--DERDIWPPAQAPTSSQELAGAPEPQ 426
E G + P+ P P P D+ D PP P Q L G P
Sbjct: 593 NGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPG--PQGLQGLPGTGGPP 650
Query: 427 GSCAQGGRVAP-GQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQ 485
G + G P G A GA G D + + A EG +G
Sbjct: 651 GENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAA 710
Query: 486 KPKAAPEGAGALA----------------QGSSLEPGRPAAPSLPGEAEP-GAHAPDKEP 528
P P AG +G EPG P A +PG+ P G P P
Sbjct: 711 GPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPP 770
Query: 529 ELGGQE----EGERDGLCGL 544
GQ EG GL G+
Sbjct: 771 GPAGQPGDKGEGGAPGLPGI 790
Score = 42.7 bits (99), Expect = 0.001
Identities = 53/200 (26%), Positives = 73/200 (36%), Gaps = 23/200 (11%)
Query: 347 SRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDI 406
+RG++ +P PP P G PG + G PA + A R P P
Sbjct: 325 ARGSD-GQPGPP--GPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP------QG 375
Query: 407 WPPAQAPTSSQELAGAPEPQGSCAQGG-RVAPGQRPAQGATGTDLDFDLSSDSESSSESE 465
AQ P + G+P +G G APG A+G G ++
Sbjct: 376 HAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPG-----PAGANGAPGLRGG 430
Query: 466 GTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQ-GSSLEPGRPAAPSLPGEA----EPG 520
+ + + GE G RG + P GA + G PG P A LPG A PG
Sbjct: 431 AGEPGKNGAKGE-PGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPG 489
Query: 521 AHAPDKEPELGGQE--EGER 538
P + G++ GER
Sbjct: 490 FRGPAGPNGIPGEKGPAGER 509
Score = 40.0 bits (92), Expect = 0.009
Identities = 54/210 (25%), Positives = 72/210 (34%), Gaps = 38/210 (18%)
Query: 325 GTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARE- 383
G+ PPG S + G + SP V P+G PG + S G + P
Sbjct: 885 GSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAP 944
Query: 384 ----LNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQ 439
+ G A P PG P R G+P PQG + G+ PG
Sbjct: 945 GPLGIAGITGARGLAGP-PGMPGPR----------------GSPGPQGVKGESGK--PGA 985
Query: 440 RPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGE--SEGKRGRQKPKAAPEGAGAL 497
G G L + ++ E DG S+G GR +P G G
Sbjct: 986 NGLSGERGPPGPQGLPGLAGTAGE--------PGRDGNPGSDGLPGRD---GSPGGKGDR 1034
Query: 498 AQ-GSSLEPGRPAAPSLPGEAEPGAHAPDK 526
+ GS PG P P PG P + D+
Sbjct: 1035 GENGSPGAPGAPGHPGPPGPVGPAGKSGDR 1064
Score = 37.0 bits (84), Expect = 0.079
Identities = 54/179 (30%), Positives = 65/179 (36%), Gaps = 28/179 (15%)
Query: 362 PEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAP-TSSQELA 420
P G APG GL A G++ A D +PG P PP A S
Sbjct: 298 PMGPRGAPGERGRPGL-PGAAGARGNDGARGSDG-QPGPPG-----PPGTAGFPGSPGAK 350
Query: 421 GAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEG 480
G P GS G APGQR G G + ++G + S G
Sbjct: 351 GEVGPAGSPGSNG--APGQRGEPGPQG-------------HAGAQGPPGPPGING--SPG 393
Query: 481 KRGRQKPKAAPEGAGAL-AQGSSLEPGRPAAPSLPGEA-EPGAHAPDKEPELGGQEEGE 537
+G P P G + A+G G AP L G A EPG + EP G E GE
Sbjct: 394 GKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRG-ERGE 451
Score = 34.3 bits (77), Expect = 0.51
Identities = 59/274 (21%), Positives = 83/274 (30%), Gaps = 50/274 (18%)
Query: 311 APNLITVKKYVYFQGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPG 370
AP + + +G PG R S + V G + R P G PG
Sbjct: 943 APGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPG 1002
Query: 371 VEPSNGLEKPARELN-GSEAATPRDSPRPGKPDERDIWPPA------------------- 410
+ + G +P R+ N GS+ RD GK D + P
Sbjct: 1003 LAGTAG--EPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1060
Query: 411 ---QAPTSSQELAGAPEPQGSCA----QGGRVAPGQRPAQGATGTDLDFDLSSDSESSSE 463
+ + AGAP P GS QG R G+ +GA G + +
Sbjct: 1061 SGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS 1120
Query: 464 SEGTKSSSSASDGESEGKRGRQKPKAAPEGAGAL-------------------AQGSSLE 504
+ G RG P P G ++GS
Sbjct: 1121 PGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH 1180
Query: 505 PGRPAAPSLPGEAEP--GAHAPDKEPELGGQEEG 536
PG+P P PG P G +GG++ G
Sbjct: 1181 PGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAG 1214
Score = 32.0 bits (71), Expect = 2.5
Identities = 32/132 (24%), Positives = 40/132 (30%), Gaps = 30/132 (22%)
Query: 735 AQRENSPAAFPDREGVPPTALFHPMPVLPKAQPGPEVRIYDSNTGKLIRTGARGPPAPSS 794
A+ E PA P G P + +PGP+ GA+GPP P
Sbjct: 349 AKGEVGPAGSPGSNGAPGQ----------RGEPGPQGH-----------AGAQGPPGPPG 387
Query: 795 SLPIRQEPSSFRWTTSLEKAATTATARRGGLRSRRRSPSPGSQGPAGSGRSGHLRPARGA 854
I P + GL R P P A R G P +
Sbjct: 388 ---INGSPGG------KGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNG 438
Query: 855 RQGAGGPEATRG 866
+G GP RG
Sbjct: 439 AKGEPGPRGERG 450
Score = 30.8 bits (68), Expect = 5.7
Identities = 48/190 (25%), Positives = 59/190 (31%), Gaps = 28/190 (14%)
Query: 355 PSPPVRDPEGV-TQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAP 413
P+ P R P G Q P +P P + P PG P I P
Sbjct: 92 PTAPTRPPNGQGPQGPKGDPG----PPGIPGRNGDPGIPGQPGSPGSPGPPGICE--SCP 145
Query: 414 TSSQELA---GAPEPQGSCAQGGRVA-PGQRPAQGATGTDLDFDLSSDSESSSESEGTKS 469
T Q + + + + A GG PG G G +S G+
Sbjct: 146 TGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPP----------GTSGHPGSPG 195
Query: 470 SSSASDGESE-GKRGRQKPKAAPEGAG----ALAQGSSLEPGRPAAPSLPGEAEPGAHAP 524
S E G+ G P P G A G S PGRP LPG PG P
Sbjct: 196 SPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPG--PPGIKGP 253
Query: 525 DKEPELGGQE 534
P G +
Sbjct: 254 AGIPGFPGMK 263
Score = 30.8 bits (68), Expect = 5.7
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 18/130 (13%)
Query: 748 EGVPPTALFHPMPVLPKAQPGPE----VRIYDSNTGKLIRTGARG------------PPA 791
EG PP P P PGP+ R G GARG PP
Sbjct: 835 EGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPG 894
Query: 792 PSSSLPIRQEPSSFRWTTSLEKAATTATARRGGLRSRRRSPSPGSQGPAGSGRSGHLRPA 851
PS S P + P T + + +G SPG+QGP G+ +
Sbjct: 895 PSGS-PGKDGPPGPAGNTGAP-GSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGI 952
Query: 852 RGARQGAGGP 861
GAR AG P
Sbjct: 953 TGARGLAGPP 962
>gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo
sapiens]
Length = 1331
Score = 46.6 bits (109), Expect = 1e-04
Identities = 70/298 (23%), Positives = 109/298 (36%), Gaps = 43/298 (14%)
Query: 328 DMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGV---TQAPGVEPSNGL-EKPARE 383
D N PP S ES + V +R + P P + P V +Q P + S + E+P +
Sbjct: 532 DPNLPPRS-ESFSISGVQPARTPPMLRPVDP-QIPHLVAVKSQGPALTASQSVHEQPTKG 589
Query: 384 LNGSEAA-----------------TPRDSPRPGKPD----------ERDIWP--PAQAPT 414
L+G + A T + P P + + E DI P P + +
Sbjct: 590 LSGFQEALNVTSHRVEMPRQNSDPTSENPPLPTRIEKFDRSSWLRQEEDIPPKVPQRTTS 649
Query: 415 SSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSAS 474
S LA P A G R+ G +P + + + +S S G+ SSSS
Sbjct: 650 ISPALARKNSPGNGSALGPRL--GSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTP 707
Query: 475 DGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPEL-GGQ 533
+ + G Q A + +S G P P P + +P P
Sbjct: 708 SSQPSSQGGSQPGSQAGSSERTRVRANSKSEGSPVLPHEPAKVKPEESRDITRPSRPASY 767
Query: 534 EEGERDGLCGLGNGCADRKEAETESQNSELSGVT--AGESLDQSMEEEEEEDTDEDDH 589
++ + L L + +E E N + VT + S + EEEEED + + H
Sbjct: 768 KKAIDEDLTALAK---ELRELRIEETNRPMKKVTDYSSSSEESESSEEEEEDGESETH 822
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,414,970
Number of Sequences: 37866
Number of extensions: 2356751
Number of successful extensions: 19481
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 1125
Number of HSP's that attempted gapping in prelim test: 13804
Number of HSP's gapped (non-prelim): 5126
length of query: 867
length of database: 18,247,518
effective HSP length: 111
effective length of query: 756
effective length of database: 14,044,392
effective search space: 10617560352
effective search space used: 10617560352
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.