Guide to the Human Genome
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Name: SLC24A1 Sequence: fasta or formatted (1099aa) NCBI GI: 4759128
Description:

solute carrier family 24 (sodium/potassium/calcium exchanger), member 1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         65           2
 C cysteine            0.6          7           1
 D aspartate           3.3         36           1
 E glutamate          10.7        118          12
 F phenylalanine       3.5         38           2
 G glycine             6.8         75           3
 H histidine           1.6         18           2
 I isoleucine          5.1         56           2
 K lysine              5.1         56           2
 L leucine             9.6        106           5
 M methionine          3.5         39           4
 N asparagine          2.5         28           2
 P proline             6.8         75           2
 Q glutamine           2.6         29           1
 R arginine            4.2         46           2
 S serine              9.6        106           3
 T threonine           8.1         89           3
 V valine              6.6         73           3
 W tryptophan          1.8         20           2
 Y tyrosine            1.7         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 24 (sodium/potassium/calcium ex... 
SLC24A2               0.149   solute carrier family 24 (sodium/potassium/calcium ex...
SLC24A4               0.091   solute carrier family 24 member 4 isoform 2 precurso...
SLC24A4               0.088   solute carrier family 24 member 4 isoform 3 
SLC24A4               0.088   solute carrier family 24 member 4 isoform 1 precurso...
SLC24A3               0.085   solute carrier family 24 (sodium/potassium/calcium e...
SLC24A5               0.067   solute carrier family 24, member 5 
RPGR                  0.047   retinitis pigmentosa GTPase regulator isoform C [Hom...
NSBP1                 0.032   nucleosomal binding protein 1 
MYT1                  0.030   myelin transcription factor 1 
CENPB                 0.027   centromere protein B 
RP1L1                 0.026   retinitis pigmentosa 1-like 1 
LOC100133758          0.025   PREDICTED: hypothetical protein, partial 
NCL                   0.025   nucleolin 
SLC24A6               0.025   solute carrier family 24 member 6 
ATRX                  0.023   transcriptional regulator ATRX isoform 2 
ATRX                  0.023   transcriptional regulator ATRX isoform 1 
NEFM                  0.022   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.022   neurofilament, medium polypeptide 150kDa isoform 2 ...
YTHDC1                0.022   splicing factor YT521-B isoform 2 
YTHDC1                0.022   splicing factor YT521-B isoform 1 
MYT1L                 0.021   myelin transcription factor 1-like 
EHMT2                 0.021   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.021   euchromatic histone-lysine N-methyltransferase 2 is...
HUWE1                 0.021   HECT, UBA and WWE domain containing 1 
MUC2                  0.020   mucin 2 precursor 
HRC                   0.020   histidine rich calcium binding protein precursor [Hom...
MYST4                 0.019   MYST histone acetyltransferase (monocytic leukemia)...
MDN1                  0.019   MDN1, midasin homolog 
C12orf12              0.019   hypothetical protein LOC196477 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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