Guide to the Human Genome
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Name: SMTNL1 Sequence: fasta or formatted (512aa) NCBI GI: 157738619
Description:

smoothelin-like 1

Referenced in:

Muscle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         64           2
 C cysteine            1.4          7           1
 D aspartate           5.9         30           2
 E glutamate          16.4         84           3
 F phenylalanine       1.8          9           2
 G glycine             8.2         42           3
 H histidine           1.0          5           1
 I isoleucine          1.4          7           1
 K lysine             10.5         54           3
 L leucine             4.1         21           2
 M methionine          1.8          9           1
 N asparagine          2.0         10           1
 P proline             7.0         36           2
 Q glutamine           3.7         19           1
 R arginine            3.3         17           2
 S serine              8.4         43           3
 T threonine           4.9         25           2
 V valine              4.3         22           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   smoothelin-like 1 
SMTN                  0.180   smoothelin isoform b 
SMTN                  0.149   smoothelin isoform c 
SMTN                  0.145   smoothelin isoform a 
SMTNL2                0.140   smoothelin-like 2 isoform 2 
SMTNL2                0.140   smoothelin-like 2 isoform 1 
EHBP1L1               0.083   tangerin 
CYTSA                 0.082   cytospin A 
CYTSA                 0.082   cytospin A 
RPGR                  0.072   retinitis pigmentosa GTPase regulator isoform C [Hom...
CYTSB                 0.072   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.072   spectrin domain with coiled-coils 1 NSP5b3b 
NEFH                  0.069   neurofilament, heavy polypeptide 200kDa 
EHBP1                 0.068   EH domain binding protein 1 isoform 1 
ACTN3                 0.068   actinin, alpha 3 
EHBP1                 0.068   EH domain binding protein 1 isoform 3 
EHBP1                 0.068   EH domain binding protein 1 isoform 3 
EHBP1                 0.068   EH domain binding protein 1 isoform 2 
ACTN1                 0.068   actinin, alpha 1 isoform c 
ACTN1                 0.068   actinin, alpha 1 isoform a 
ACTN1                 0.068   actinin, alpha 1 isoform b 
NEFM                  0.067   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.067   neurofilament, medium polypeptide 150kDa isoform 2 ...
SPTBN5                0.066   spectrin, beta, non-erythrocytic 5 
ACTN2                 0.064   actinin, alpha 2 
SPTBN4                0.063   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
SPTB                  0.062   spectrin beta isoform a 
SPTB                  0.062   spectrin beta isoform b 
ACTN4                 0.062   actinin, alpha 4 
MICALL1               0.061   molecule interacting with Rab13 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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