Guide to the Human Genome
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Name: C1orf173 Sequence: fasta or formatted (1530aa) NCBI GI: 83921609
Description:

hypothetical protein LOC127254

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0        138           3
 C cysteine            0.8         12           2
 D aspartate           5.0         77           2
 E glutamate          15.8        242           4
 F phenylalanine       1.9         29           2
 G glycine             7.8        120           3
 H histidine           2.1         32           2
 I isoleucine          2.9         44           2
 K lysine              7.8        119           3
 L leucine             7.3        112           2
 M methionine          2.3         35           2
 N asparagine          3.3         51           2
 P proline             5.1         78           3
 Q glutamine           3.5         54           2
 R arginine            5.8         89           4
 S serine              7.5        114           3
 T threonine           5.4         83           2
 V valine              4.9         75           3
 W tryptophan          0.3          5           1
 Y tyrosine            1.4         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC127254 
RP1L1                 0.030   retinitis pigmentosa 1-like 1 
RPGR                  0.026   retinitis pigmentosa GTPase regulator isoform C [Hom...
PCLO                  0.021   piccolo isoform 2 
PCLO                  0.021   piccolo isoform 1 
ATRX                  0.020   transcriptional regulator ATRX isoform 2 
PLEC1                 0.019   plectin 1 isoform 11 
PLEC1                 0.019   plectin 1 isoform 10 
PLEC1                 0.019   plectin 1 isoform 8 
PLEC1                 0.019   plectin 1 isoform 7 
PLEC1                 0.019   plectin 1 isoform 6 
PLEC1                 0.019   plectin 1 isoform 3 
PLEC1                 0.019   plectin 1 isoform 2 
PLEC1                 0.019   plectin 1 isoform 1 
MYH6                  0.018   myosin heavy chain 6 
NEFH                  0.017   neurofilament, heavy polypeptide 200kDa 
BOD1L                 0.016   biorientation of chromosomes in cell division 1-like...
NES                   0.016   nestin 
AKAP12                0.016   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.016   A kinase (PRKA) anchor protein 12 isoform 2 
MYH10                 0.015   myosin, heavy polypeptide 10, non-muscle 
TCHH                  0.015   trichohyalin 
NUMA1                 0.015   nuclear mitotic apparatus protein 1 
MYH8                  0.015   myosin, heavy chain 8, skeletal muscle, perinatal [...
GOLIM4                0.015   golgi integral membrane protein 4 
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
NEFM                  0.014   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.014   neurofilament, medium polypeptide 150kDa isoform 2 ...
EIF5B                 0.014   eukaryotic translation initiation factor 5B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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