Guide to the Human Genome
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Name: RAE1 Sequence: fasta or formatted (368aa) NCBI GI: 62739173
Description:

RAE1 (RNA export 1, S.pombe) homolog

Referenced in:

Nucleus and Nucleolus
Spindle, M phase, and Meiosis
WD Repeat Proteins

Other entries for this name:
alt mRNA [368aa] RAE1 (RNA export 1, S.pombe) homolog
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         28           2
 C cysteine            3.0         11           2
 D aspartate           6.2         23           2
 E glutamate           3.3         12           2
 F phenylalanine       5.2         19           1
 G glycine             6.2         23           1
 H histidine           3.3         12           1
 I isoleucine          5.4         20           1
 K lysine              6.5         24           2
 L leucine             4.9         18           1
 M methionine          2.4          9           2
 N asparagine          6.0         22           1
 P proline             6.2         23           2
 Q glutamine           4.3         16           2
 R arginine            3.5         13           2
 S serine              9.0         33           2
 T threonine           6.8         25           2
 V valine              4.9         18           2
 W tryptophan          2.4          9           1
 Y tyrosine            2.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAE1 (RNA export 1, S.pombe) homolog 
RAE1                  1.000   RAE1 (RNA export 1, S.pombe) homolog 
BUB3                  0.223   budding uninhibited by benzimidazoles 3 isoform b [H...
BUB3                  0.223   budding uninhibited by benzimidazoles 3 isoform a [Ho...
WDR38                 0.052   WD repeat domain 38 
WDR5                  0.050   WD repeat domain 5 
WDR5                  0.050   WD repeat domain 5 
WDR51A                0.049   WD repeat domain 51A isoform 3 
WDR51A                0.049   WD repeat domain 51A isoform 2 
WDR51A                0.049   WD repeat domain 51A isoform 1 
WDR17                 0.044   WD repeat domain 17 isoform 2 
WDR17                 0.044   WD repeat domain 17 isoform 1 
ATG16L1               0.042   APG16 autophagy 16-like isoform 1 
ATG16L1               0.042   APG16 autophagy 16-like isoform 2 
KATNB1                0.041   katanin p80 subunit B 1 
WDR5B                 0.041   WD repeat domain 5B 
SMU1                  0.040   smu-1 suppressor of mec-8 and unc-52 homolog 
WDR51B                0.040   WD repeat domain 51B 
GNB2L1                0.040   guanine nucleotide binding protein (G protein), beta ...
TAF5L                 0.040   PCAF associated factor 65 beta isoform a 
COPB2                 0.039   coatomer protein complex, subunit beta 2 (beta prime)...
SNRNP40               0.039   WD repeat domain 57 (U5 snRNP specific) 
CHAF1B                0.039   chromatin assembly factor 1 subunit B 
TBL1XR1               0.036   transducin (beta)-like 1 X-linked receptor 1 
SPAG16                0.036   sperm associated antigen 16 isoform 1 
TAF5                  0.035   TBP-associated factor 5 
PRPF4                 0.035   PRP4 pre-mRNA processing factor 4 homolog 
GNB2                  0.033   guanine nucleotide-binding protein, beta-2 subunit [...
WDR69                 0.033   WD repeat domain 69 
GNB1                  0.032   guanine nucleotide-binding protein, beta-1 subunit [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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