Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BUB3 Sequence: fasta or formatted (326aa) NCBI GI: 56550081
Description:

budding uninhibited by benzimidazoles 3 isoform b

Referenced in:

Spindle, M phase, and Meiosis
WD Repeat Proteins

Other entries for this name:
alt prot [328aa] budding uninhibited by benzimidazoles 3 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         17           1
 C cysteine            2.1          7           1
 D aspartate           6.4         21           2
 E glutamate           4.9         16           1
 F phenylalanine       4.3         14           1
 G glycine             5.8         19           2
 H histidine           3.1         10           1
 I isoleucine          4.3         14           1
 K lysine              5.2         17           3
 L leucine             6.7         22           2
 M methionine          2.1          7           1
 N asparagine          5.5         18           2
 P proline             5.5         18           2
 Q glutamine           4.6         15           2
 R arginine            5.2         17           2
 S serine              8.3         27           2
 T threonine           7.1         23           2
 V valine              7.4         24           1
 W tryptophan          1.8          6           1
 Y tyrosine            4.3         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   budding uninhibited by benzimidazoles 3 isoform b [H... 
BUB3                  0.997   budding uninhibited by benzimidazoles 3 isoform a [Ho...
RAE1                  0.256   RAE1 (RNA export 1, S.pombe) homolog 
RAE1                  0.256   RAE1 (RNA export 1, S.pombe) homolog 
WDR51A                0.059   WD repeat domain 51A isoform 2 
WDR51A                0.059   WD repeat domain 51A isoform 1 
SNRNP40               0.059   WD repeat domain 57 (U5 snRNP specific) 
WDR69                 0.053   WD repeat domain 69 
UTP15                 0.050   UTP15, U3 small nucleolar ribonucleoprotein, homolog...
WDR38                 0.049   WD repeat domain 38 
WDR5B                 0.049   WD repeat domain 5B 
GNB4                  0.047   guanine nucleotide-binding protein, beta-4 subunit [...
GNB1                  0.047   guanine nucleotide-binding protein, beta-1 subunit [...
KATNB1                0.046   katanin p80 subunit B 1 
SPAG16                0.046   sperm associated antigen 16 isoform 1 
WDR51A                0.044   WD repeat domain 51A isoform 3 
GNB5                  0.044   guanine nucleotide-binding protein, beta-5 subunit is...
GNB5                  0.044   guanine nucleotide-binding protein, beta-5 subunit i...
WDR51B                0.044   WD repeat domain 51B 
GNB2                  0.041   guanine nucleotide-binding protein, beta-2 subunit [...
WDR12                 0.041   WD repeat domain 12 protein 
BTRC                  0.038   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.038   beta-transducin repeat containing protein isoform 1 ...
THOC3                 0.038   THO complex 3 
RBBP7                 0.038   retinoblastoma binding protein 7 
RBBP4                 0.038   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.038   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.038   retinoblastoma binding protein 4 isoform a 
WDR5                  0.037   WD repeat domain 5 
WDR5                  0.037   WD repeat domain 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press