Guide to the Human Genome
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Name: ACBD3 Sequence: fasta or formatted (528aa) NCBI GI: 15826852
Description:

acyl-Coenzyme A binding domain containing 3

Referenced in:

Additional Enzymes and Related Sequences
ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         41           3
 C cysteine            0.9          5           2
 D aspartate           3.8         20           3
 E glutamate          14.4         76           5
 F phenylalanine       2.8         15           2
 G glycine             6.1         32           2
 H histidine           1.9         10           1
 I isoleucine          2.3         12           1
 K lysine              5.7         30           2
 L leucine             7.8         41           2
 M methionine          1.7          9           2
 N asparagine          3.2         17           1
 P proline             6.1         32           3
 Q glutamine           7.2         38           3
 R arginine            7.4         39           4
 S serine              5.9         31           2
 T threonine           3.2         17           1
 V valine              6.6         35           3
 W tryptophan          1.1          6           1
 Y tyrosine            4.2         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   acyl-Coenzyme A binding domain containing 3 
TMED8                 0.165   transmembrane emp24 protein transport domain contain...
ENAH                  0.052   enabled homolog isoform a 
ENAH                  0.052   enabled homolog isoform b 
MAP4K4                0.052   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.048   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.048   mitogen-activated protein kinase kinase kinase kinas...
GIGYF2                0.047   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.047   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.047   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.047   GRB10 interacting GYF protein 2 isoform b 
TCHH                  0.045   trichohyalin 
MINK1                 0.044   misshapen/NIK-related kinase isoform 4 
ZNF853                0.042   zinc finger protein 853 
MINK1                 0.042   misshapen/NIK-related kinase isoform 2 
MINK1                 0.042   misshapen/NIK-related kinase isoform 3 
MINK1                 0.042   misshapen/NIK-related kinase isoform 1 
MAP7D2                0.042   MAP7 domain containing 2 
INCENP                0.042   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.042   inner centromere protein antigens 135/155kDa isofor...
MYO10                 0.041   myosin X 
CALD1                 0.041   caldesmon 1 isoform 1 
TNIK                  0.040   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.040   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.040   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.040   TRAF2 and NCK interacting kinase isoform 1 
MYO6                  0.039   myosin VI 
MAP7                  0.039   microtubule-associated protein 7 
LOC283685             0.038   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133758          0.037   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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