UPF3A 9838

Name: UPF3A	Sequence: fasta or formatted (443aa)		NCBI GI: 18375525
Description: UPF3 regulator of nonsense transcripts homolog A isoform hUpf3pdelta		Referenced in: RNases and RNA Stability
Other entries for this name: alt prot [476aa] UPF3 regulator of nonsense transcripts homolog A isoform hUpf3p
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 32 2 C cysteine 1.6 7 1 D aspartate 5.0 22 2 E glutamate 15.3 68 3 F phenylalanine 2.3 10 2 G glycine 8.1 36 3 H histidine 2.0 9 2 I isoleucine 2.5 11 1 K lysine 9.3 41 3 L leucine 7.2 32 2 M methionine 0.9 4 1 N asparagine 1.4 6 1 P proline 6.1 27 2 Q glutamine 4.1 18 3 R arginine 13.1 58 4 S serine 5.6 25 3 T threonine 3.6 16 2 V valine 2.3 10 2 W tryptophan 0.2 1 1 Y tyrosine 2.3 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 UPF3 regulator of nonsense transcripts homolog A iso... UPF3A 0.982 UPF3 regulator of nonsense transcripts homolog A iso... UPF3B 0.353 UPF3 regulator of nonsense transcripts homolog B iso... UPF3B 0.343 UPF3 regulator of nonsense transcripts homolog B iso... SFRS12 0.060 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.060 splicing factor, arginine/serine-rich 12 isoform b [... TCHH 0.056 trichohyalin RBM25 0.055 RNA binding motif protein 25 LOC100286959 0.055 PREDICTED: hypothetical protein XP_002343921 SNRNP70 0.054 U1 small nuclear ribonucleoprotein 70 kDa ZC3H13 0.052 zinc finger CCCH-type containing 13 LOC100133599 0.049 PREDICTED: hypothetical protein LOC100288837 0.048 PREDICTED: hypothetical protein XP_002343931, parti... EIF3A 0.046 eukaryotic translation initiation factor 3, subunit 1... MAP4K4 0.046 mitogen-activated protein kinase kinase kinase kinas... LOC100134067 0.045 PREDICTED: hypothetical protein PRPF38B 0.045 PRP38 pre-mRNA processing factor 38 (yeast) domain ... LOC100131202 0.045 PREDICTED: hypothetical protein LOC645202 0.044 PREDICTED: hypothetical protein LOC645202 LOC100131202 0.043 PREDICTED: hypothetical protein MAP4K4 0.043 mitogen-activated protein kinase kinase kinase kinas... BAT2D1 0.043 HBxAg transactivated protein 2 CALD1 0.041 caldesmon 1 isoform 1 RPGR 0.040 retinitis pigmentosa GTPase regulator isoform C [Hom... LOC100133758 0.040 PREDICTED: hypothetical protein, partial INCENP 0.040 inner centromere protein antigens 135/155kDa isofor... INCENP 0.040 inner centromere protein antigens 135/155kDa isofor... LOC100133599 0.040 PREDICTED: hypothetical protein LOC400352 0.040 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.040 PREDICTED: similar to Putative golgin subfamily A m... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.