Search of human proteins with 61969664

Search of human proteins with 61969664

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|61969664 divergent-paired related homeobox [Homo sapiens]
         (191 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|61969664 divergent-paired related homeobox [Homo sapiens]          405   e-114
gi|4557489 cone-rod homeobox protein [Homo sapiens]                    67   9e-12
gi|61969666 arginine-fifty homeobox [Homo sapiens]                     60   1e-09
gi|27777663 goosecoid [Homo sapiens]                                   59   3e-09
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]          58   6e-09
gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]         57   7e-09
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]         57   7e-09
gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]          57   1e-08
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom...    57   1e-08
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom...    57   1e-08
gi|152963644 paired-like homeodomain transcription factor 1 [Hom...    56   2e-08
gi|21361183 paired-like homeodomain transcription factor 2 isofo...    56   2e-08
gi|24234711 paired-like homeodomain transcription factor 2 isofo...    56   2e-08
gi|24234708 paired-like homeodomain transcription factor 2 isofo...    56   2e-08
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]          56   2e-08
gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]          56   2e-08
gi|126090909 engrailed homeobox 1 [Homo sapiens]                       56   2e-08
gi|4504367 HESX homeobox 1 [Homo sapiens]                              55   3e-08
gi|4885363 goosecoid homeobox 2 [Homo sapiens]                         55   3e-08
gi|46249382 paired-like homeobox 2a [Homo sapiens]                     55   5e-08
gi|122937484 dorsal root ganglia homeobox [Homo sapiens]               55   5e-08
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     54   6e-08
gi|20070107 orthodenticle homeobox 1 [Homo sapiens]                    54   6e-08
gi|113204604 aristaless-like homeobox 3 [Homo sapiens]                 54   8e-08
gi|24497589 aristaless related homeobox [Homo sapiens]                 54   8e-08
gi|122937321 UNC homeobox [Homo sapiens]                               54   1e-07
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]    53   1e-07
gi|157426823 NK2 homeobox 4 [Homo sapiens]                             53   1e-07
gi|4826912 paired-like homeodomain 3 [Homo sapiens]                    53   2e-07
gi|189083681 paired box gene 6 isoform a [Homo sapiens]                53   2e-07

>gi|61969664 divergent-paired related homeobox [Homo sapiens]
          Length = 191

 Score =  405 bits (1042), Expect = e-114
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MPGSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVL 60
           MPGSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVL
Sbjct: 1   MPGSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVL 60

Query: 61  QVWFKNHRAKLKKAKCKHIHQKQETPQPPIPEGGVSTSVGLRNADTLPRLPNAAHPIGLV 120
           QVWFKNHRAKLKKAKCKHIHQKQETPQPPIPEGGVSTSVGLRNADTLPRLPNAAHPIGLV
Sbjct: 61  QVWFKNHRAKLKKAKCKHIHQKQETPQPPIPEGGVSTSVGLRNADTLPRLPNAAHPIGLV 120

Query: 121 YTGHRVPSFQLILYPNLKVPANDFIGHRIVHFGCCRDPNIYCLYPILESQVCAPSFHSGS 180
           YTGHRVPSFQLILYPNLKVPANDFIGHRIVHFGCCRDPNIYCLYPILESQVCAPSFHSGS
Sbjct: 121 YTGHRVPSFQLILYPNLKVPANDFIGHRIVHFGCCRDPNIYCLYPILESQVCAPSFHSGS 180

Query: 181 PACSSNQSRER 191
           PACSSNQSRER
Sbjct: 181 PACSSNQSRER 191


>gi|4557489 cone-rod homeobox protein [Homo sapiens]
          Length = 299

 Score = 67.0 bits (162), Expect = 9e-12
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 6/92 (6%)

Query: 18  RKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRAKLKKAKCK 77
           R+RT FT+ QLE+L  LF +  YP+   ++E+A KI++  + +QVWFKN R     AKC+
Sbjct: 41  RERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRR-----AKCR 95

Query: 78  HIHQKQETPQPPIPEGGVSTSVGLRNADTLPR 109
              Q+Q+  Q P P G        R A T PR
Sbjct: 96  QQRQQQKQQQQP-PGGQAKARPAKRKAGTSPR 126


>gi|61969666 arginine-fifty homeobox [Homo sapiens]
          Length = 315

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 24/57 (42%), Positives = 43/57 (75%)

Query: 17  HRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRAKLKK 73
           H++RT FT +Q E+L  LF++  +P+ +LQ+++A ++D+  + ++VWF+N R KLKK
Sbjct: 79  HKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKK 135


>gi|27777663 goosecoid [Homo sapiens]
          Length = 257

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 12  DQMHSHRKR---TMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHR 68
           +Q+H  RKR   T+FT +QLE L  LF E  YP+   ++++A K+ +    ++VWFKN R
Sbjct: 153 NQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 212

Query: 69  AKLKKAK 75
           AK ++ K
Sbjct: 213 AKWRRQK 219


>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
          Length = 331

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 3   GSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQV 62
           G ED  +G+ ++   R RT FT +QL +L  LF+E  YP+  +++E++ ++ +    +QV
Sbjct: 129 GMED--EGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQV 186

Query: 63  WFKNHRAKLKK 73
           WF+N RAK +K
Sbjct: 187 WFQNRRAKCRK 197


>gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]
          Length = 225

 Score = 57.4 bits (137), Expect = 7e-09
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 4   SEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVW 63
           SED   G+ ++   R RT FT +QL +L  LF+E  YP+  +++E++ ++ +    +QVW
Sbjct: 106 SED-EDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVW 164

Query: 64  FKNHRAKLKK 73
           F+N RAK +K
Sbjct: 165 FQNRRAKCRK 174


>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
          Length = 292

 Score = 57.4 bits (137), Expect = 7e-09
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 4   SEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVW 63
           SED   G+ ++   R RT FT +QL +L  LF+E  YP+  +++E++ ++ +    +QVW
Sbjct: 106 SED-EDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVW 164

Query: 64  FKNHRAKLKK 73
           F+N RAK +K
Sbjct: 165 FQNRRAKCRK 174


>gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
          Length = 190

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 24/65 (36%), Positives = 43/65 (66%)

Query: 9  KGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHR 68
          +G+ ++   R RT FT +QL +L  LF+E  YP+  +++E++ ++ +    +QVWF+N R
Sbjct: 4  EGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRR 63

Query: 69 AKLKK 73
          AK +K
Sbjct: 64 AKCRK 68


>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
           sapiens]
          Length = 382

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 5/119 (4%)

Query: 6   DLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFK 65
           + R G       R RT FT +QLE L   F +  YP+  +++ +A   ++    +QVWFK
Sbjct: 61  EARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFK 120

Query: 66  NHRAKLKKAK---CKHIHQKQETPQPPIPEGGVSTSVGLRNADT--LPRLPNAAHPIGL 119
           N RAK +K +    K   QKQ+  +    EG           DT   PRLP +  P  L
Sbjct: 121 NRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAEL 179


>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
           sapiens]
          Length = 377

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 5/119 (4%)

Query: 6   DLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFK 65
           + R G       R RT FT +QLE L   F +  YP+  +++ +A   ++    +QVWFK
Sbjct: 56  EARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFK 115

Query: 66  NHRAKLKKAK---CKHIHQKQETPQPPIPEGGVSTSVGLRNADT--LPRLPNAAHPIGL 119
           N RAK +K +    K   QKQ+  +    EG           DT   PRLP +  P  L
Sbjct: 116 NRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAEL 174


>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
           sapiens]
          Length = 314

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 3   GSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQV 62
           G++D  K K Q    R+RT FT +QL++L   F  N YP+ S+++E+A   ++    ++V
Sbjct: 79  GADDPAKKKKQ---RRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRV 135

Query: 63  WFKNHRAKLKK 73
           WFKN RAK +K
Sbjct: 136 WFKNRRAKWRK 146


>gi|21361183 paired-like homeodomain transcription factor 2 isoform
           c [Homo sapiens]
          Length = 324

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 3   GSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQV 62
           G+ED  K K Q    R+RT FT +QL++L   F  N YP+ S ++E+A   ++    ++V
Sbjct: 82  GAEDPSKKKRQ---RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRV 138

Query: 63  WFKNHRAKLKK 73
           WFKN RAK +K
Sbjct: 139 WFKNRRAKWRK 149


>gi|24234711 paired-like homeodomain transcription factor 2
          isoform a [Homo sapiens]
          Length = 271

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 3  GSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQV 62
          G+ED  K K Q    R+RT FT +QL++L   F  N YP+ S ++E+A   ++    ++V
Sbjct: 29 GAEDPSKKKRQ---RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRV 85

Query: 63 WFKNHRAKLKK 73
          WFKN RAK +K
Sbjct: 86 WFKNRRAKWRK 96


>gi|24234708 paired-like homeodomain transcription factor 2 isoform
           b [Homo sapiens]
          Length = 317

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 3   GSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQV 62
           G+ED  K K Q    R+RT FT +QL++L   F  N YP+ S ++E+A   ++    ++V
Sbjct: 75  GAEDPSKKKRQ---RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRV 131

Query: 63  WFKNHRAKLKK 73
           WFKN RAK +K
Sbjct: 132 WFKNRRAKWRK 142


>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
          Length = 289

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 10/112 (8%)

Query: 18  RKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRAKLKKA--- 74
           R+RT FT+ QL+ L  LF +  YP+  +++E+A KI++  + +QVWFKN RAK ++    
Sbjct: 40  RERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 99

Query: 75  -------KCKHIHQKQETPQPPIPEGGVSTSVGLRNADTLPRLPNAAHPIGL 119
                  K +   +K    +    E G S      ++ ++P + +++ P+ +
Sbjct: 100 QQNGGQNKVRPAKKKTSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSI 151


>gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]
          Length = 297

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 10/112 (8%)

Query: 18  RKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRAKLKKA--- 74
           R+RT FT+ QL+ L  LF +  YP+  +++E+A KI++  + +QVWFKN RAK ++    
Sbjct: 48  RERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 107

Query: 75  -------KCKHIHQKQETPQPPIPEGGVSTSVGLRNADTLPRLPNAAHPIGL 119
                  K +   +K    +    E G S      ++ ++P + +++ P+ +
Sbjct: 108 QQNGGQNKVRPAKKKTSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSI 159


>gi|126090909 engrailed homeobox 1 [Homo sapiens]
          Length = 392

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query: 2   PGSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQ 61
           P +  L+K K++    R RT FT +QL+ L   F  N Y     ++ +A ++ ++ + ++
Sbjct: 289 PRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIK 348

Query: 62  VWFKNHRAKLKKA 74
           +WF+N RAK+KKA
Sbjct: 349 IWFQNKRAKIKKA 361


>gi|4504367 HESX homeobox 1 [Homo sapiens]
          Length = 185

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 24/68 (35%), Positives = 42/68 (61%)

Query: 7   LRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKN 66
           L++        R RT FT+ Q+E L  +F  N YP   +++++A K+++    +Q+WF+N
Sbjct: 99  LKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQN 158

Query: 67  HRAKLKKA 74
            RAKLK++
Sbjct: 159 RRAKLKRS 166


>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
          Length = 205

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 25/63 (39%), Positives = 41/63 (65%)

Query: 13  QMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRAKLK 72
           Q  + R RT+F+++QL+ L  LF +N YP+ S ++ +A +I +    ++VWFKN RAK +
Sbjct: 123 QRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182

Query: 73  KAK 75
             K
Sbjct: 183 HQK 185


>gi|46249382 paired-like homeobox 2a [Homo sapiens]
          Length = 284

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 14  MHSHRK----RTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRA 69
           +H  RK    RT FT  QL++L  +F E  YP+   ++E+A KID+    +QVWF+N RA
Sbjct: 84  LHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRA 143

Query: 70  KLKK 73
           K +K
Sbjct: 144 KFRK 147


>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
          Length = 268

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 30/85 (35%), Positives = 46/85 (54%)

Query: 4   SEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVW 63
           S D   G  +    R RT FT +QLE L  +F +  YP+   ++E+A KI++    +QVW
Sbjct: 26  SGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVW 85

Query: 64  FKNHRAKLKKAKCKHIHQKQETPQP 88
           F+N RAK +K +     Q+    +P
Sbjct: 86  FQNRRAKWRKTERGASDQEPGAKEP 110


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 54.3 bits (129), Expect = 6e-08
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 12  DQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRAKL 71
           ++    R RT FT  QL++L  +F E  YP+   ++E+A KID+    +QVWF+N RAK 
Sbjct: 94  EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKF 153

Query: 72  KK 73
           +K
Sbjct: 154 RK 155


>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
          Length = 354

 Score = 54.3 bits (129), Expect = 6e-08
 Identities = 25/56 (44%), Positives = 40/56 (71%)

Query: 18 RKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRAKLKK 73
          R+RT FT+ QL+ L  LF +  YP+  +++E+A KI++  + +QVWFKN RAK ++
Sbjct: 40 RERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95


>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
          Length = 343

 Score = 53.9 bits (128), Expect = 8e-08
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 1   MPGSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVL 60
           +P S +L K K +    R RT F+  QLE+L  +F +  YP+   ++++A + D+    +
Sbjct: 140 LPDSMELAKNKSK--KRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARV 197

Query: 61  QVWFKNHRAKLKKAKCKHIHQKQETPQPPIPEGGVSTSVGLRNADTLPRLPNA 113
           QVWF+N RAK +K   +   + QE   P      +S    L   D+ P+L N+
Sbjct: 198 QVWFQNRRAKWRKR--ERYGKIQEGRNPFTAAYDISV---LPRTDSHPQLQNS 245


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score = 53.9 bits (128), Expect = 8e-08
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query: 1   MPGSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVL 60
           +    D  +G  +    R RT FT  QLE+L   F +  YP+   ++E+A ++D+    +
Sbjct: 313 LSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARV 372

Query: 61  QVWFKNHRAKLKK 73
           QVWF+N RAK +K
Sbjct: 373 QVWFQNRRAKWRK 385


>gi|122937321 UNC homeobox [Homo sapiens]
          Length = 531

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 25/56 (44%), Positives = 39/56 (69%)

Query: 18  RKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRAKLKK 73
           R RT FT  QLE+L   FNE+ YP+  +++ +A ++D+  + +QVWF+N RAK +K
Sbjct: 107 RTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRK 162


>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
          Length = 372

 Score = 53.1 bits (126), Expect = 1e-07
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 4/142 (2%)

Query: 10  GKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRA 69
           GKD     R RT+ T +Q       F  +  P   +++ +A++  +   V+QVWF+N RA
Sbjct: 190 GKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRA 249

Query: 70  KLKKAKCKHIHQKQETPQPPIPEGGVSTSVGLRNADTLPRLPNAAHPIGLVYT--GHRVP 127
           K+KK   +H  Q+++     + +  +S+ +    A   P  P     + +  +  G   P
Sbjct: 250 KMKKLARRHQQQQEQQNSQRLGQEVLSSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDP 309

Query: 128 SFQLILYPNLKVPANDFIGHRI 149
             Q +  P  ++P ND I H I
Sbjct: 310 FQQGLTPP--QMPGNDSIFHDI 329


>gi|157426823 NK2 homeobox 4 [Homo sapiens]
          Length = 354

 Score = 53.1 bits (126), Expect = 1e-07
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 13/129 (10%)

Query: 1   MPGSEDLRKGKDQMHS--------HRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASK 52
           + G  D  K    +H+         ++R +F++ Q+ +L   F +  Y +   ++ +AS 
Sbjct: 166 LTGIADAAKSLGPLHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASM 225

Query: 53  IDIHPTVLQVWFKNHRAKLKK-AKCKHIHQKQET----PQPPIPEGGVSTSVGLRNADTL 107
           I + PT +++WF+NHR K+K+ AK K   Q Q+     P PP P      +V +   D  
Sbjct: 226 IHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVPVLVKDGK 285

Query: 108 PRLPNAAHP 116
           P    A+ P
Sbjct: 286 PCQNGASTP 294


>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
          Length = 302

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 1   MPGSEDLRKGKDQMHSHRKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVL 60
           +PG      G  +    R+RT FT +QL++L   F  N YP+ S ++E+A   ++    +
Sbjct: 48  LPGGSP-EDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARV 106

Query: 61  QVWFKNHRAKLKK 73
           +VWFKN RAK +K
Sbjct: 107 RVWFKNRRAKWRK 119


>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 18  RKRTMFTKKQLEDLNILFNENPYPNPSLQKEMASKIDIHPTVLQVWFKNHRAKLKKAKCK 77
           R RT FT++Q+E L   F    YP+   ++ +A+KID+    +QVWF N RAK ++ +  
Sbjct: 212 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 271

Query: 78  HIHQKQETPQPP-IP-EGGVSTSV 99
              ++Q +  P  IP     STSV
Sbjct: 272 RNQRRQASNTPSHIPISSSFSTSV 295


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,052,134
Number of Sequences: 37866
Number of extensions: 444798
Number of successful extensions: 1553
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1220
Number of HSP's gapped (non-prelim): 362
length of query: 191
length of database: 18,247,518
effective HSP length: 96
effective length of query: 95
effective length of database: 14,612,382
effective search space: 1388176290
effective search space used: 1388176290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.