Guide to the Human Genome
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Name: DPRX Sequence: fasta or formatted (191aa) NCBI GI: 61969664
Description:

divergent-paired related homeobox

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          9           2
 C cysteine            3.1          6           2
 D aspartate           3.7          7           1
 E glutamate           4.2          8           1
 F phenylalanine       3.7          7           1
 G glycine             5.2         10           2
 H histidine           5.8         11           1
 I isoleucine          5.8         11           1
 K lysine              7.9         15           2
 L leucine             8.4         16           1
 M methionine          2.1          4           1
 N asparagine          5.8         11           1
 P proline             9.9         19           2
 Q glutamine           5.2         10           1
 R arginine            5.8         11           1
 S serine              7.3         14           2
 T threonine           3.7          7           1
 V valine              4.7          9           1
 W tryptophan          0.5          1           1
 Y tyrosine            2.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   divergent-paired related homeobox 
CRX                   0.111   cone-rod homeobox protein 
ARGFX                 0.092   arginine-fifty homeobox 
GSC                   0.089   goosecoid 
SHOX2                 0.087   short stature homeobox 2 isoform a 
SHOX                  0.084   short stature homeobox isoform SHOXb 
SHOX                  0.084   short stature homeobox isoform SHOXa 
SHOX2                 0.084   short stature homeobox 2 isoform b 
DMBX1                 0.084   diencephalon/mesencephalon homeobox 1 isoform b [Hom...
DMBX1                 0.084   diencephalon/mesencephalon homeobox 1 isoform a [Hom...
PITX1                 0.082   paired-like homeodomain transcription factor 1 [Hom...
PITX2                 0.082   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.082   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.082   paired-like homeodomain transcription factor 2 isofo...
OTX2                  0.082   orthodenticle homeobox 2 isoform b 
OTX2                  0.082   orthodenticle homeobox 2 isoform a 
EN1                   0.082   engrailed homeobox 1 
HESX1                 0.079   HESX homeobox 1 
GSC2                  0.079   goosecoid homeobox 2 
PHOX2A                0.079   paired-like homeobox 2a 
DRGX                  0.079   dorsal root ganglia homeobox 
PHOX2B                0.076   paired-like homeobox 2b 
OTX1                  0.076   orthodenticle homeobox 1 
ALX3                  0.076   aristaless-like homeobox 3 
ARX                   0.076   aristaless related homeobox 
UNCX                  0.076   UNC homeobox 
LMX1B                 0.074   LIM homeobox transcription factor 1, beta 
NKX2-4                0.074   NK2 homeobox 4 
PITX3                 0.074   paired-like homeodomain 3 
PAX6                  0.074   paired box gene 6 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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