Guide to the Human Genome
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Name: CCDC66 Sequence: fasta or formatted (914aa) NCBI GI: 213688413
Description:

coiled-coil domain containing 66 isoform 2

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [948aa] coiled-coil domain containing 66 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         33           1
 C cysteine            1.8         16           1
 D aspartate           4.5         41           2
 E glutamate          10.7         98           3
 F phenylalanine       2.0         18           1
 G glycine             3.4         31           1
 H histidine           2.6         24           1
 I isoleucine          5.3         48           2
 K lysine             10.9        100           3
 L leucine             8.3         76           2
 M methionine          2.2         20           1
 N asparagine          5.6         51           2
 P proline             4.3         39           2
 Q glutamine           8.9         81           2
 R arginine            5.0         46           3
 S serine              9.5         87           2
 T threonine           5.5         50           2
 V valine              3.3         30           2
 W tryptophan          1.0          9           1
 Y tyrosine            1.8         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 66 isoform 2 
CCDC66                1.000   coiled-coil domain containing 66 isoform 1 
TCHH                  0.030   trichohyalin 
LOC727832             0.024   golgi autoantigen, golgin subfamily a-like 
INCENP                0.024   inner centromere protein antigens 135/155kDa isofor...
LOC645202             0.023   PREDICTED: hypothetical protein LOC645202 
EEA1                  0.023   early endosome antigen 1, 162kD 
INCENP                0.023   inner centromere protein antigens 135/155kDa isofor...
CSPP1                 0.022   centrosome spindle pole associated protein 1 isofor...
CSPP1                 0.022   centrosome spindle pole associated protein 1 isofor...
GIGYF2                0.022   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.022   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.022   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.022   GRB10 interacting GYF protein 2 isoform b 
MYH10                 0.022   myosin, heavy polypeptide 10, non-muscle 
WDR87                 0.022   NYD-SP11 protein 
LOC283685             0.022   PREDICTED: golgi autoantigen, golgin subfamily a-li...
PLEC1                 0.021   plectin 1 isoform 11 
PLEC1                 0.021   plectin 1 isoform 10 
PLEC1                 0.021   plectin 1 isoform 8 
PLEC1                 0.021   plectin 1 isoform 7 
PLEC1                 0.021   plectin 1 isoform 6 
PLEC1                 0.021   plectin 1 isoform 3 
PLEC1                 0.021   plectin 1 isoform 2 
PLEC1                 0.021   plectin 1 isoform 1 
LOC283767             0.021   golgi autoantigen, golgin subfamily a-like 
MNS1                  0.021   meiosis-specific nuclear structural 1 
RDX                   0.021   radixin 
SFRS17A               0.020   DNA segment on chromosome X and Y (unique) 155 expre...
MAP4K4                0.020   mitogen-activated protein kinase kinase kinase kinas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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