Guide to the Human Genome
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Name: POGK Sequence: fasta or formatted (609aa) NCBI GI: 22027480
Description:

pogo transposable element with KRAB domain

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         38           2
 C cysteine            1.1          7           1
 D aspartate           5.4         33           2
 E glutamate           9.9         60           7
 F phenylalanine       3.3         20           1
 G glycine             6.7         41           3
 H histidine           1.3          8           1
 I isoleucine          3.6         22           2
 K lysine              5.3         32           2
 L leucine             8.9         54           2
 M methionine          4.4         27           2
 N asparagine          3.9         24           2
 P proline             6.7         41           2
 Q glutamine           4.8         29           2
 R arginine            6.4         39           3
 S serine              6.2         38           2
 T threonine           3.8         23           1
 V valine              6.6         40           3
 W tryptophan          2.3         14           1
 Y tyrosine            3.1         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pogo transposable element with KRAB domain 
POGZ                  0.072   pogo transposable element with ZNF domain isoform 1 ...
POGZ                  0.072   pogo transposable element with ZNF domain isoform 2 ...
ZNF619                0.044   zinc finger protein 619 isoform 2 
LOC100293029          0.043   PREDICTED: similar to zinc finger protein 30 
LOC100290062          0.043   PREDICTED: hypothetical protein XP_002346980 
LOC100289678          0.043   PREDICTED: hypothetical protein XP_002342831 
LOC100289678          0.043   PREDICTED: similar to zinc finger protein 30 
ZNF777                0.038   zinc finger protein 777 
TIGD6                 0.038   hypothetical protein LOC81789 
ZNF620                0.037   zinc finger protein 620 
ZNF398                0.037   zinc finger 398 isoform a 
ZNF425                0.036   zinc finger protein 425 
ZNF862                0.035   zinc finger protein 862 
ZNF786                0.034   zinc finger protein 786 
ZNF662                0.034   zinc finger protein 662 isoform 2 
TIGD4                 0.033   tigger transposable element derived 4 
ZNF707                0.033   zinc finger protein 707 
ZNF707                0.033   zinc finger protein 707 
ZNF707                0.033   zinc finger protein 707 
ZNF311                0.032   zinc finger protein 311 
ZNF251                0.032   zinc finger protein 251 
ZNF780A               0.032   zinc finger protein 780A isoform c 
ZNF621                0.031   zinc finger protein 621 
ZNF621                0.031   zinc finger protein 621 
ZNF785                0.030   zinc finger protein 785 
ZNF780A               0.030   zinc finger protein 780A isoform b 
ZNF780A               0.030   zinc finger protein 780A isoform b 
ZNF75A                0.030   zinc finger protein 75a 
ZNF2                  0.029   zinc finger protein 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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