Guide to the Human Genome
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Name: E2F8 Sequence: fasta or formatted (867aa) NCBI GI: 38505226
Description:

E2F family member 8

Referenced in:

E2F Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         59           2
 C cysteine            1.3         11           1
 D aspartate           3.2         28           1
 E glutamate           6.8         59           2
 F phenylalanine       3.0         26           2
 G glycine             5.5         48           2
 H histidine           2.3         20           1
 I isoleucine          4.8         42           2
 K lysine              7.4         64           3
 L leucine             8.4         73           2
 M methionine          1.8         16           2
 N asparagine          4.8         42           2
 P proline             9.1         79           2
 Q glutamine           3.9         34           2
 R arginine            4.5         39           3
 S serine             12.0        104           3
 T threonine           5.9         51           2
 V valine              6.5         56           1
 W tryptophan          0.3          3           1
 Y tyrosine            1.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   E2F family member 8 
E2F7                  0.215   E2F transcription factor 7 
E2F3                  0.021   E2F transcription factor 3 
E2F1                  0.018   E2F transcription factor 1 
LOC647546             0.017   PREDICTED: hypothetical protein 
E2F2                  0.017   E2F transcription factor 2 
E2F4                  0.017   E2F transcription factor 4 
E2F5                  0.016   E2F transcription factor 5 isoform 2 
E2F5                  0.016   E2F transcription factor 5 isoform 1 
TMEM108               0.016   transmembrane protein 108 
TMEM108               0.016   transmembrane protein 108 
MKL1                  0.015   megakaryoblastic leukemia 1 protein 
SRCAP                 0.015   Snf2-related CBP activator protein 
PRG4                  0.013   proteoglycan 4 isoform D 
PRG4                  0.013   proteoglycan 4 isoform C 
PRG4                  0.013   proteoglycan 4 isoform B 
PRG4                  0.013   proteoglycan 4 isoform A 
E2F6                  0.013   E2F transcription factor 6 
NOLC1                 0.013   nucleolar and coiled-body phosphoprotein 1 
MUC17                 0.013   mucin 17 
MUC16                 0.012   mucin 16 
AUTS2                 0.012   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.012   autism susceptibility candidate 2 isoform 1 
NACA                  0.012   nascent polypeptide-associated complex alpha subuni...
MDC1                  0.011   mediator of DNA-damage checkpoint 1 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
SRRM2                 0.011   splicing coactivator subunit SRm300 
ARID1A                0.011   AT rich interactive domain 1A isoform a 
ARID1A                0.011   AT rich interactive domain 1A isoform b 
MUC6                  0.011   mucin 6, gastric 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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