Guide to the Human Genome
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Name: CEP120 Sequence: fasta or formatted (986aa) NCBI GI: 96975038
Description:

coiled-coil domain containing 100

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         62           2
 C cysteine            1.1         11           2
 D aspartate           4.9         48           2
 E glutamate          10.2        101           2
 F phenylalanine       2.8         28           3
 G glycine             3.4         34           2
 H histidine           2.2         22           2
 I isoleucine          5.8         57           2
 K lysine              8.0         79           3
 L leucine            11.2        110           3
 M methionine          1.5         15           1
 N asparagine          3.2         32           2
 P proline             5.7         56           2
 Q glutamine           7.5         74           3
 R arginine            5.5         54           2
 S serine              7.3         72           3
 T threonine           5.3         52           2
 V valine              5.0         49           2
 W tryptophan          0.7          7           1
 Y tyrosine            2.3         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 100 
EEA1                  0.030   early endosome antigen 1, 162kD 
TCHH                  0.028   trichohyalin 
LOC283685             0.026   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ITSN1                 0.026   intersectin 1 isoform ITSN-s 
ITSN1                 0.026   intersectin 1 isoform ITSN-l 
AZI1                  0.026   5-azacytidine induced 1 isoform b 
EIF3A                 0.024   eukaryotic translation initiation factor 3, subunit 1...
GIGYF2                0.024   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.024   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.024   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.024   GRB10 interacting GYF protein 2 isoform b 
LOC440243             0.024   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283767             0.023   golgi autoantigen, golgin subfamily a-like 
RNF20                 0.023   ring finger protein 20 
GOLGA4                0.023   golgi autoantigen, golgin subfamily a, 4 
LOC645202             0.023   PREDICTED: hypothetical protein LOC645202 
CENPF                 0.023   centromere protein F 
C14orf145             0.023   hypothetical protein LOC145508 
GOLGB1                0.023   golgi autoantigen, golgin subfamily b, macrogolgin ...
ITSN2                 0.023   intersectin 2 isoform 3 
ZNF853                0.023   zinc finger protein 853 
LOC283685             0.023   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CENPE                 0.023   centromere protein E 
LOC727832             0.023   golgi autoantigen, golgin subfamily a-like 
CEP110                0.023   centrosomal protein 110kDa 
LOC100133758          0.022   PREDICTED: hypothetical protein, partial 
KIF16B                0.022   kinesin-like motor protein C20orf23 
RBM25                 0.022   RNA binding motif protein 25 
LOC400352             0.021   PREDICTED: similar to Putative golgin subfamily A m...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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