Guide to the Human Genome
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Name: GOLGA7B Sequence: fasta or formatted (167aa) NCBI GI: 58219040
Description:

golgi autoantigen, golgin subfamily a, 7B

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         11           1
 C cysteine            3.0          5           1
 D aspartate           3.0          5           1
 E glutamate           9.6         16           2
 F phenylalanine       4.8          8           1
 G glycine            10.2         17           5
 H histidine           1.2          2           1
 I isoleucine          6.6         11           1
 K lysine              4.8          8           2
 L leucine             7.8         13           3
 M methionine          1.8          3           1
 N asparagine          1.8          3           1
 P proline             2.4          4           2
 Q glutamine           4.2          7           1
 R arginine            6.6         11           2
 S serine             12.6         21           4
 T threonine           5.4          9           1
 V valine              3.6          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   golgi autoantigen, golgin subfamily a, 7B 
GOLGA7                0.614   golgi autoantigen, golgin subfamily a, 7 
GOLGA7                0.614   golgi autoantigen, golgin subfamily a, 7 
NAP1L3                0.032   nucleosome assembly protein 1-like 3 
PRDM8                 0.032   PR domain containing 8 
PRDM8                 0.032   PR domain containing 8 
RFX1                  0.029   regulatory factor X1 
FOXC1                 0.029   forkhead box C1 
ZIC2                  0.026   zinc finger protein of the cerebellum 2 
C2orf29               0.026   hypothetical protein LOC55571 
ZNF281                0.026   zinc finger protein 281 
KRT10                 0.026   keratin 10 
KRT9                  0.026   keratin 9 
DFNB31                0.026   CASK-interacting protein CIP98 isoform 1 
DMKN                  0.026   dermokine isoform 4 precursor 
DMKN                  0.026   dermokine isoform 5 precursor 
DMKN                  0.026   dermokine isoform 3 precursor 
DMKN                  0.026   dermokine isoform 2 precursor 
DDX3Y                 0.026   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.026   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
TRIM71                0.026   tripartite motif-containing 71 
STXBP5L               0.026   syntaxin binding protein 5-like 
KRT1                  0.023   keratin 1 
LRCH2                 0.023   leucine-rich repeats and calponin homology (CH) dom...
KRT2                  0.023   keratin 2 
ZNF746                0.023   zinc finger protein 746 
MN1                   0.023   meningioma  1 
ZSWIM6                0.023   zinc finger, SWIM-type containing 6 
XKR4                  0.023   XK, Kell blood group complex subunit-related family,...
POU4F2                0.023   Brn3b POU domain transcription factor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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