Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GOLGA7 Sequence: fasta or formatted (137aa) NCBI GI: 50541946
Description:

golgi autoantigen, golgin subfamily a, 7

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [137aa] golgi autoantigen, golgin subfamily a, 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          7           1
 C cysteine            2.9          4           1
 D aspartate           2.9          4           1
 E glutamate          10.2         14           2
 F phenylalanine       3.6          5           1
 G glycine             6.6          9           2
 H histidine           0.7          1           1
 I isoleucine          6.6          9           1
 K lysine              5.8          8           2
 L leucine             9.5         13           3
 M methionine          2.2          3           1
 N asparagine          2.9          4           2
 P proline             3.6          5           1
 Q glutamine           8.0         11           2
 R arginine            7.3         10           1
 S serine              5.1          7           2
 T threonine           6.6          9           1
 V valine              4.4          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   golgi autoantigen, golgin subfamily a, 7 
GOLGA7                1.000   golgi autoantigen, golgin subfamily a, 7 
GOLGA7B               0.747   golgi autoantigen, golgin subfamily a, 7B 
CHIC1                 0.036   cysteine-rich hydrophobic domain 1 
CHIC2                 0.032   cysteine-rich hydrophobic domain 2 
ZNF407                0.020   zinc finger protein 407 isoform 3 
ZNF407                0.020   zinc finger protein 407 isoform 2 
ZNF407                0.020   zinc finger protein 407 isoform 1 
SGSM1                 0.020   RUN and TBC1 domain containing 2 isoform 4 
SGSM1                 0.020   RUN and TBC1 domain containing 2 isoform 3 
SGSM1                 0.020   RUN and TBC1 domain containing 2 isoform 2 
SGSM1                 0.020   RUN and TBC1 domain containing 2 isoform 1 
KIAA1984              0.012   hypothetical protein LOC84960 
FAM184B               0.012   hypothetical protein LOC27146 
ACSF2                 0.008   acyl-CoA synthetase family member 2 
SERPINB12             0.008   serine (or cysteine) proteinase inhibitor, clade B (...
AMACR                 0.008   alpha-methylacyl-CoA racemase isoform 1 
JHDM1D                0.008   jumonji C domain containing histone demethylase 1 ho...
SGSM2                 0.008   RUN and TBC1 domain containing 1 isoform 2 
SGSM2                 0.008   RUN and TBC1 domain containing 1 isoform 1 
BBS2                  0.008   Bardet-Biedl syndrome 2 protein 
LAMA2                 0.004   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.004   laminin alpha 2 subunit isoform a precursor 
VPS41                 0.004   vacuolar protein sorting 41 isoform 2 
VPS41                 0.004   vacuolar protein sorting 41 isoform 1 
C19orf36              0.004   hypothetical protein LOC113177 isoform 3 
C19orf36              0.004   hypothetical protein LOC113177 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press