Guide to the Human Genome
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Name: DDX3Y Sequence: fasta or formatted (660aa) NCBI GI: 169881239
Description:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked

Referenced in:

DEAD / H Helicase Family
Y-linked Genes

Other entries for this name:
alt mRNA [660aa] DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         35           2
 C cysteine            1.2          8           1
 D aspartate           7.1         47           2
 E glutamate           6.2         41           2
 F phenylalanine       4.4         29           2
 G glycine            12.0         79           4
 H histidine           2.3         15           2
 I isoleucine          4.8         32           2
 K lysine              5.0         33           2
 L leucine             7.1         47           2
 M methionine          2.1         14           2
 N asparagine          3.8         25           1
 P proline             4.1         27           2
 Q glutamine           3.0         20           2
 R arginine            8.3         55           2
 S serine              9.7         64           4
 T threonine           3.6         24           1
 V valine              5.0         33           3
 W tryptophan          1.1          7           2
 Y tyrosine            3.8         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ... 
DDX3Y                 1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX3X                 0.918   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX4                  0.318   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.318   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.318   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX5                  0.229   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX17                 0.227   DEAD box polypeptide 17 isoform 1 
DDX17                 0.227   DEAD box polypeptide 17 isoform 3 
DDX46                 0.199   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX41                 0.199   DEAD-box protein abstrakt 
DDX23                 0.190   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX43                 0.187   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX42                 0.184   DEAD box polypeptide 42 protein 
DDX42                 0.184   DEAD box polypeptide 42 protein 
DDX53                 0.166   DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 
DDX59                 0.155   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX27                 0.140   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX47                 0.140   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
EIF4A3                0.139   eukaryotic translation initiation factor 4A, isoform ...
DDX52                 0.137   ATP-dependent RNA helicase ROK1 isoform b 
DDX52                 0.137   ATP-dependent RNA helicase ROK1 isoform a 
EIF4A1                0.134   eukaryotic translation initiation factor 4A isoform 1...
EIF4A2                0.134   eukaryotic translation initiation factor 4A2 
DDX21                 0.122   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
DDX50                 0.119   nucleolar protein GU2 
DDX6                  0.117   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
DDX54                 0.117   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.117   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
DDX49                 0.116   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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