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Search of human proteins with 58218998
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58218998 hypothetical protein LOC340204 [Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58218998 hypothetical protein LOC340204 [Homo sapiens] 261 1e-70
gi|4502895 colipase preproprotein [Homo sapiens] 55 1e-08
gi|155029556 hypothetical protein LOC389383 [Homo sapiens] 40 4e-04
gi|169205072 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|113424011 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|239744776 PREDICTED: hypothetical protein [Homo sapiens] 34 0.023
gi|13569952 keratin associated protein 9-9 [Homo sapiens] 33 0.051
gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens] 32 0.087
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 32 0.11
gi|7657023 dickkopf homolog 2 precursor [Homo sapiens] 31 0.25
gi|13994360 keratin associated protein 1.5 [Homo sapiens] 30 0.33
gi|46250735 keratin associated protein 10-2 [Homo sapiens] 30 0.33
gi|16118240 keratin associated protein 9.2 [Homo sapiens] 30 0.33
gi|32140182 keratin associated protein 10-10 [Homo sapiens] 30 0.33
gi|225690544 keratin associated protein 4-11 [Homo sapiens] 30 0.43
gi|14210534 keratin associated protein 4.4 [Homo sapiens] 30 0.43
gi|13994129 keratin associated protein 4-12 [Homo sapiens] 30 0.43
gi|52627203 olfactory receptor, family 9, subfamily Q, member 1 ... 30 0.43
gi|239757193 PREDICTED: hypothetical protein [Homo sapiens] 30 0.57
gi|239751700 PREDICTED: hypothetical protein XP_002347968 [Homo ... 30 0.57
gi|239746204 PREDICTED: hypothetical protein XP_002343661 [Homo ... 30 0.57
gi|21704279 jagged 2 isoform b precursor [Homo sapiens] 30 0.57
gi|21704277 jagged 2 isoform a precursor [Homo sapiens] 30 0.57
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 30 0.57
gi|122937283 6720455I24Rik homolog [Homo sapiens] 30 0.57
gi|239751310 PREDICTED: keratin associated protein 4-9 isoform 2... 29 0.74
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi... 29 0.74
gi|239756792 PREDICTED: hypothetical protein [Homo sapiens] 29 0.97
gi|239751312 PREDICTED: hypothetical protein [Homo sapiens] 29 0.97
gi|239751308 PREDICTED: keratin associated protein 4-9 isoform 1... 29 0.97
>gi|58218998 hypothetical protein LOC340204 [Homo sapiens]
Length = 121
Score = 261 bits (666), Expect = 1e-70
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MMLPQWLLLLFLLFFFLFLLTRGSLSPTKYNLLELKESCIRNQDCETGCCQRAPDNCESH 60
MMLPQWLLLLFLLFFFLFLLTRGSLSPTKYNLLELKESCIRNQDCETGCCQRAPDNCESH
Sbjct: 1 MMLPQWLLLLFLLFFFLFLLTRGSLSPTKYNLLELKESCIRNQDCETGCCQRAPDNCESH 60
Query: 61 CAEKGSEGSLCQTQVFFGQYRACPCLRNLTCIYSKNEKWLSIAYGRCQKIGRQKLAKKMF 120
CAEKGSEGSLCQTQVFFGQYRACPCLRNLTCIYSKNEKWLSIAYGRCQKIGRQKLAKKMF
Sbjct: 61 CAEKGSEGSLCQTQVFFGQYRACPCLRNLTCIYSKNEKWLSIAYGRCQKIGRQKLAKKMF 120
Query: 121 F 121
F
Sbjct: 121 F 121
>gi|4502895 colipase preproprotein [Homo sapiens]
Length = 112
Score = 55.1 bits (131), Expect = 1e-08
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 33 LELKESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLTCI 92
LE E C+ + C++ CCQ + + C SE S C + +G Y CPC R LTC
Sbjct: 28 LENGELCMNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKCPCERGLTCE 87
Query: 93 YSKN--EKWLSIAYGRCQKIGRQK 114
K + +G C GR K
Sbjct: 88 GDKTIVGSITNTNFGICHDAGRSK 111
>gi|155029556 hypothetical protein LOC389383 [Homo sapiens]
Length = 100
Score = 40.0 bits (92), Expect = 4e-04
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 34 ELKESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLTCI 92
++ + C + +C +GCC D+ + CA + +C Q CPC LTCI
Sbjct: 29 KITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTCI 87
>gi|169205072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 35.0 bits (79), Expect = 0.013
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 4 PQWLLLLFLLFFFLFLLTRGSLSPTKYNLLE--LKESCIRNQDCETGCC 50
P W+LLL LL L G K NL + E C R+++C++ CC
Sbjct: 4 PGWMLLLLLLLLLLLGSMAGYGPQKKLNLSHKGIGEPCGRHEECQSNCC 52
>gi|113424011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 35.0 bits (79), Expect = 0.013
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 4 PQWLLLLFLLFFFLFLLTRGSLSPTKYNLLE--LKESCIRNQDCETGCC 50
P W+LLL LL L G K NL + E C R+++C++ CC
Sbjct: 4 PGWMLLLLLLLLLLLGSMAGYGPQKKLNLSHKGIGEPCGRHEECQSNCC 52
>gi|239744776 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 34.3 bits (77), Expect = 0.023
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 PQWLLLLFLLFFFLFLLTRGSLSPTKYNLLE--LKESCIRNQDCETGCC 50
P W LLL LL L G K NL + E C R+++C++ CC
Sbjct: 4 PGWTLLLLLLLLLLLGSMAGYGPQKKLNLSHKGIGEPCRRHEECQSNCC 52
>gi|13569952 keratin associated protein 9-9 [Homo sapiens]
Length = 154
Score = 33.1 bits (74), Expect = 0.051
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 36 KESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRAC-PCLRNLTCIY 93
+ +C +N C T CCQ C S C + S GS C GQ +C P TC Y
Sbjct: 53 RPACCQNTCCRTTCCQ---PTCLSSCCGQTSCGSSC------GQSSSCAPVYCRRTCYY 102
>gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens]
Length = 108
Score = 32.3 bits (72), Expect = 0.087
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 17 LFLLTRGSLSPTKYNLLELKESCIRNQDCETGCCQRAPDNCESH--CAEKGSEGSLCQTQ 74
L LL L+P + + +C ++ C G C +S C G G C
Sbjct: 12 LLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPL 71
Query: 75 V----FFGQ--YRACPCLRNLTCIYSKNEKWLSIA 103
FFG+ + CPCL L C+ + +++ +A
Sbjct: 72 TRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLA 106
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 7 LLLLFLLFFFLFLLTRGSLSPTKYNLLELKESCIRN----QDCETGCCQRAPDNCES 59
LLL+ LLF L RG+L P + + L L C R+ + + G C+R C +
Sbjct: 69 LLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCCRA 125
>gi|7657023 dickkopf homolog 2 precursor [Homo sapiens]
Length = 259
Score = 30.8 bits (68), Expect = 0.25
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 37 ESCIRNQDCETGCCQRAPDNCESH-----CAEKGSEGSLCQTQVFFGQ-----YRACPCL 86
+ C+R+ DC G C C H C +G +C Q G ++ C C
Sbjct: 181 DPCLRSSDCIEGFC------CARHFWTKICKPVLHQGEVCTKQRKKGSHGLEIFQRCDCA 234
Query: 87 RNLTCIYSKNEKWLSIA-YGRCQKI 110
+ L+C K+ + S A CQKI
Sbjct: 235 KGLSCKVWKDATYSSKARLHVCQKI 259
>gi|13994360 keratin associated protein 1.5 [Homo sapiens]
Length = 174
Score = 30.4 bits (67), Expect = 0.33
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 38 SCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQ 72
SC + CET CCQ P CE+ C + S CQ
Sbjct: 59 SCCQPSCCETSCCQ--PSCCETSCCQP----SCCQ 87
Score = 26.2 bits (56), Expect = 6.3
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 14/48 (29%)
Query: 38 SCIRNQDCETGCCQRAPDNCESH------------CAEKGSEGSLCQT 73
SC + CET CCQ P +C++ C+ + S C+T
Sbjct: 23 SCCQPSCCETSCCQ--PRSCQTSFCGFPSFSTSGTCSSSCCQPSCCET 68
>gi|46250735 keratin associated protein 10-2 [Homo sapiens]
Length = 255
Score = 30.4 bits (67), Expect = 0.33
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 34 ELKESCIRNQDCETGCCQRAP---DNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLT 90
E SC + C+ CC +P C S C + S+C V G + PC + +
Sbjct: 157 ESSSSCCQQSSCQPACCTSSPCQQSCCVSVCCKPVCCKSICCVPVCSG--ASSPCCQQSS 214
Query: 91 C 91
C
Sbjct: 215 C 215
Score = 25.8 bits (55), Expect = 8.2
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 38 SCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRAC 83
SC + C+ CC +P C+ C +C V G C
Sbjct: 78 SCCQQSSCQPACCTSSP--CQQACCVPVCCKPVCCVPVCCGASSCC 121
>gi|16118240 keratin associated protein 9.2 [Homo sapiens]
Length = 174
Score = 30.4 bits (67), Expect = 0.33
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 36 KESCIRNQDCETGCCQRA-------PDNCESHCAEKGSEGSLCQTQV----FFGQYRAC- 83
+ +C +N C T CCQ P C + C + GS C Q GQ +C
Sbjct: 53 RPTCCQNTCCRTTCCQPTCVTSCCQPSCCSTPCCQPTCCGSSCCGQTSCGSSCGQSSSCA 112
Query: 84 PCLRNLTCIY 93
P TC Y
Sbjct: 113 PVYCRRTCYY 122
>gi|32140182 keratin associated protein 10-10 [Homo sapiens]
Length = 251
Score = 30.4 bits (67), Expect = 0.33
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 34 ELKESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRAC 83
E SC + C+ CC +P C+ C S+C V G +C
Sbjct: 121 ESSPSCCQQSSCQPTCCTSSP--CQQACCVPVCSKSVCYVPVCSGASTSC 168
>gi|225690544 keratin associated protein 4-11 [Homo sapiens]
Length = 195
Score = 30.0 bits (66), Expect = 0.43
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 36 KESCIRNQDCETGCCQRA---PDNCESHCAEKGSEGSLCQTQVFFGQYRAC--PCLRNLT 90
+E+C R CET CC+ P C S C S+C Q + R C C R
Sbjct: 21 QETCCRPSCCETTCCRTTYCRPSCCVSSCCRPQCCQSVC-CQPTCCRPRCCISSCCRPSC 79
Query: 91 CIYS 94
C+ S
Sbjct: 80 CVSS 83
Score = 28.9 bits (63), Expect = 0.97
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 38 SCIRNQDCETGCCQRAPDNCESHCA-EKGSEGSLCQTQVFFGQYRACPCLR 87
SC R Q C++ CCQ P C C+ S C++ R C CLR
Sbjct: 118 SCCRPQCCQSVCCQ--PTCCHPSCSISSCCRPSCCESSC----CRPCCCLR 162
>gi|14210534 keratin associated protein 4.4 [Homo sapiens]
Length = 166
Score = 30.0 bits (66), Expect = 0.43
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 38 SCIRNQDCETGCCQRA---PDNCESHCAEKGSEGSLC 71
SC R Q C+T CC+ P C S C SLC
Sbjct: 129 SCCRPQCCQTTCCRTTCCRPSCCVSRCYRPHCGQSLC 165
Score = 29.6 bits (65), Expect = 0.57
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 36 KESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQT 73
+ SC R Q C++ CCQ C S+C CQT
Sbjct: 102 RPSCCRPQCCQSVCCQ-PTCCCPSYCVSSCCRPQCCQT 138
Score = 28.9 bits (63), Expect = 0.97
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 38 SCIRNQDCETGCCQRA---PDNCESHCAE-KGSEGSLCQTQVFFGQYRACPCLRNLTC 91
SC R Q C+T CC+ P C S C + + CQ Q C R C
Sbjct: 44 SCCRPQCCQTTCCRTTCCHPSCCVSSCCRPQCCQSVCCQPTCCRPQCCQTTCCRTTCC 101
Score = 26.9 bits (58), Expect = 3.7
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 37 ESCIRNQDCETGCCQRA---PDNCESHCAE-KGSEGSLCQTQVFFGQYRACPCLRNLTC 91
E+C R C+T CC+ P C S C + + + C+T C R C
Sbjct: 18 ENCCRPSYCQTTCCRTTCCRPSCCVSSCCRPQCCQTTCCRTTCCHPSCCVSSCCRPQCC 76
>gi|13994129 keratin associated protein 4-12 [Homo sapiens]
Length = 201
Score = 30.0 bits (66), Expect = 0.43
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 38 SCIRNQDCETGCCQRA---PDNC-ESHCAEKGSEGSLCQTQVFFGQYRACPCLR 87
SC R Q C++ CCQ P C S C E S C R C CLR
Sbjct: 124 SCCRPQCCQSVCCQPTCCRPSCCISSSCCPSCCESSCC---------RPCCCLR 168
Score = 27.3 bits (59), Expect = 2.8
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 37 ESCIRNQDCETGCCQRA---PDNCESHCAEKGSEGSLC 71
E+C R C+T CC+ P C S C S+C
Sbjct: 18 ENCCRPSCCQTTCCRTTCCRPSCCVSSCCRPQCCQSVC 55
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 38 SCIRNQDCETGCCQRAPDNCESHCAE 63
SC R Q C++ CCQ P C C +
Sbjct: 44 SCCRPQCCQSVCCQ--PTCCRPSCCQ 67
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 38 SCIRNQDCETGCCQRAPDNCESHCAE 63
SC R Q C++ CCQ P C C +
Sbjct: 84 SCCRPQCCQSVCCQ--PTCCRPSCCQ 107
Score = 25.8 bits (55), Expect = 8.2
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 36 KESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLC 71
+ SC + C T CC+ P C S C S+C
Sbjct: 62 RPSCCQTTCCRTTCCR--PSCCVSSCCRPQCCQSVC 95
Score = 25.8 bits (55), Expect = 8.2
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 36 KESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLC 71
+ SC + C T CC+ P C S C S+C
Sbjct: 102 RPSCCQTTCCRTTCCR--PSCCVSSCCRPQCCQSVC 135
>gi|52627203 olfactory receptor, family 9, subfamily Q, member 1
[Homo sapiens]
Length = 310
Score = 30.0 bits (66), Expect = 0.43
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 4 PQWLLLLFLLFFFLFLLT 21
P+W L LFLLF F++L+T
Sbjct: 21 PEWALPLFLLFLFMYLIT 38
>gi|239757193 PREDICTED: hypothetical protein [Homo sapiens]
Length = 397
Score = 29.6 bits (65), Expect = 0.57
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 2 MLPQWLL---LLFLLFFFLFLLTRGSLSPTKY 30
+L +W L +LFLLF LFLLT L+P +Y
Sbjct: 301 VLQRWQLTQVILFLLFLLLFLLTLCILNPIQY 332
>gi|239751700 PREDICTED: hypothetical protein XP_002347968 [Homo
sapiens]
Length = 215
Score = 29.6 bits (65), Expect = 0.57
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 2 MLPQWLL---LLFLLFFFLFLLTRGSLSPTKY 30
+L +W L +LFLLF LFLLT L+P +Y
Sbjct: 119 VLQRWQLTQVILFLLFLLLFLLTLCILNPIQY 150
>gi|239746204 PREDICTED: hypothetical protein XP_002343661 [Homo
sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 0.57
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 2 MLPQWLL---LLFLLFFFLFLLTRGSLSPTKY 30
+L +W L +LFLLF LFLLT L+P +Y
Sbjct: 98 VLQRWQLTQVILFLLFLLLFLLTLCILNPIQY 129
>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
Length = 1200
Score = 29.6 bits (65), Expect = 0.57
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 31 NLLELKESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLT 90
N + + +C N G C P E HC G G C + + + PC T
Sbjct: 343 NCEKAEHACTSNPCANGGSCHEVPSGFECHC-PSGWSGPTCALDI--DECASNPCAAGGT 399
Query: 91 CI 92
C+
Sbjct: 400 CV 401
>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
Length = 1238
Score = 29.6 bits (65), Expect = 0.57
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 31 NLLELKESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLT 90
N + + +C N G C P E HC G G C + + + PC T
Sbjct: 343 NCEKAEHACTSNPCANGGSCHEVPSGFECHC-PSGWSGPTCALDI--DECASNPCAAGGT 399
Query: 91 CI 92
C+
Sbjct: 400 CV 401
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 29.6 bits (65), Expect = 0.57
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 36 KESCIRNQDCETGCCQRAPDNCESHCAE-----KGSEGSLCQTQVFFGQYRACPCLRNLT 90
+ SC + C++ CC+ P C+S C + G S CQ+ Y+ C C ++
Sbjct: 175 QSSCCKPYCCQSSCCK--PYCCQSSCCKPCSCFSGCGSSCCQSSC----YKPC-CCQSSC 227
Query: 91 CI 92
C+
Sbjct: 228 CV 229
>gi|122937283 6720455I24Rik homolog [Homo sapiens]
Length = 1413
Score = 29.6 bits (65), Expect = 0.57
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 49 CCQRAPDNCESHCAEK--GSEGSLCQTQV-FFG-----QYRACPCLRNLTC 91
C +R PD+CE + G+ +LCQ + FFG + A PC N C
Sbjct: 464 CRERVPDDCECRNGGRCLGANTTLCQCPLGFFGLLCEFEITAMPCNMNTQC 514
>gi|239751310 PREDICTED: keratin associated protein 4-9 isoform 2
[Homo sapiens]
Length = 195
Score = 29.3 bits (64), Expect = 0.74
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 36 KESCIRNQDCETGCCQRA---PDNCESHCAEKG-SEGSLCQTQVFFGQYRACPCLRNLTC 91
+E+C R CET CC+ P C S C + + C+T + C R C
Sbjct: 21 QETCCRPSCCETTCCRTTCCRPSCCVSSCCRPHCCQTTCCRTTCYRPSCCVSSCCRPQCC 80
Score = 27.3 bits (59), Expect = 2.8
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 38 SCIRNQDCETGCCQRAPDNCESHCA-EKGSEGSLCQTQVFFGQYRACPCLR 87
SC + Q C++ CCQ P+ C C+ S C++ R C C+R
Sbjct: 118 SCCKPQCCQSVCCQ--PNCCRPSCSISSCCRPSCCESSC----CRPCCCVR 162
Score = 26.9 bits (58), Expect = 3.7
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 38 SCIRNQDCETGCCQRAPDNCESHCAE 63
SC R Q C+ CCQ P C C E
Sbjct: 73 SCCRPQCCQPVCCQ--PTCCRPSCCE 96
>gi|7662350 cell recognition molecule Caspr2 precursor [Homo
sapiens]
Length = 1331
Score = 29.3 bits (64), Expect = 0.74
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 23 GSLSPTKYNLLELKESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVF 76
GS + ++ + + C+ N G C + D+ + C E G G+ C ++
Sbjct: 542 GSFANVSIDMCAIIDRCVPNHCEHGGKCSQTWDSFKCTCDETGYSGATCHNSIY 595
>gi|239756792 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 28.9 bits (63), Expect = 0.97
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 38 SCIRNQDCETGCCQRA-------PDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLT 90
+C +N C T CCQ P C + C + GS C Q G P +
Sbjct: 55 TCCQNTCCRTTCCQPTCVASCCQPSCCSTPCCQPTCCGSSCCGQTSCGSSCCQPICGSSC 114
Query: 91 C 91
C
Sbjct: 115 C 115
>gi|239751312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 28.9 bits (63), Expect = 0.97
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 38 SCIRNQDCETGCCQRA-------PDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLT 90
+C +N C T CCQ P C + C + GS C Q G P +
Sbjct: 55 TCCQNTCCRTTCCQPTCVASCCQPSCCSTPCCQPTCCGSSCCGQTSCGSSCCQPICGSSC 114
Query: 91 C 91
C
Sbjct: 115 C 115
>gi|239751308 PREDICTED: keratin associated protein 4-9 isoform 1
[Homo sapiens]
Length = 210
Score = 28.9 bits (63), Expect = 0.97
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 36 KESCIRNQDCETGCCQRA---PDNCESHCAEKGSEGSLC 71
+E+C R CET CC+ P C S C S+C
Sbjct: 21 QETCCRPSCCETTCCRTTCCRPSCCVSSCCRPQCCQSVC 59
Score = 27.3 bits (59), Expect = 2.8
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 38 SCIRNQDCETGCCQRAPDNCESHCA-EKGSEGSLCQTQVFFGQYRACPCLR 87
SC + Q C++ CCQ P+ C C+ S C++ R C C+R
Sbjct: 133 SCCKPQCCQSVCCQ--PNCCRPSCSISSCCRPSCCESSC----CRPCCCVR 177
Score = 26.9 bits (58), Expect = 3.7
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 38 SCIRNQDCETGCCQRAPDNCESHCAE 63
SC R Q C+ CCQ P C C E
Sbjct: 88 SCCRPQCCQPVCCQ--PTCCRPSCCE 111
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 38 SCIRNQDCETGCCQ---RAPDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLTC 91
SC R Q C++ CCQ P C++ C C+T + C R C
Sbjct: 48 SCCRPQCCQSVCCQPTCSRPSCCQTTC---------CRTTCYRPSCCVSSCCRPQCC 95
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.141 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,996,109
Number of Sequences: 37866
Number of extensions: 219064
Number of successful extensions: 1122
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 232
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.