Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292534 Sequence: fasta or formatted (397aa) NCBI GI: 239757193
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         23           2
 C cysteine            3.5         14           1
 D aspartate           2.5         10           1
 E glutamate           4.3         17           1
 F phenylalanine       2.8         11           2
 G glycine            13.1         52           2
 H histidine           3.5         14           1
 I isoleucine          1.0          4           1
 K lysine              1.0          4           1
 L leucine            14.6         58           3
 M methionine          1.0          4           1
 N asparagine          1.0          4           1
 P proline             5.3         21           1
 Q glutamine           6.8         27           1
 R arginine            8.1         32           2
 S serine              9.1         36           2
 T threonine           5.5         22           2
 V valine              7.3         29           3
 W tryptophan          2.8         11           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290655          0.538   PREDICTED: hypothetical protein XP_002347968 
LOC100288150          0.482   PREDICTED: hypothetical protein XP_002343661 
KRT9                  0.010   keratin 9 
KCNK4                 0.010   TRAAK 
SLC22A10              0.008   solute carrier family 22, member 10 
OR10Q1                0.008   olfactory receptor, family 10, subfamily Q, member 1...
OR2D3                 0.006   olfactory receptor, family 2, subfamily D, member 3 ...
BRWD3                 0.006   bromodomain and WD repeat domain containing 3 [Homo...
FOXF2                 0.006   forkhead box F2 
KLB                   0.006   klotho beta 
LOC100287616          0.006   PREDICTED: hypothetical protein XP_002343393 
DLG5                  0.006   discs large homolog 5 
C6orf127              0.006   hypothetical protein LOC340204 
C5orf42               0.005   hypothetical protein LOC65250 
RLTPR                 0.005   RGD motif, leucine rich repeats, tropomodulin domain...
SHE                   0.005   Src homology 2 domain containing E 
LOC100131102          0.005   PREDICTED: hypothetical protein 
LOC100131102          0.005   PREDICTED: hypothetical protein 
LOC100131102          0.005   PREDICTED: hypothetical protein 
HEXDC                 0.005   hexosaminidase (glycosyl hydrolase family 20, catal...
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
NEDD1                 0.005   neural precursor cell expressed, developmentally dow...
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
DHX57                 0.005   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
KRTAP19-6             0.005   keratin associated protein 19-6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press