Guide to the Human Genome
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Name: LOC100288150 Sequence: fasta or formatted (194aa) NCBI GI: 239746204
Description:

PREDICTED: hypothetical protein XP_002343661

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.1          4           2
 C cysteine            4.1          8           1
 D aspartate           1.5          3           1
 E glutamate           2.6          5           1
 F phenylalanine       4.6          9           2
 G glycine            13.9         27           2
 H histidine           2.6          5           1
 I isoleucine          2.1          4           1
 K lysine              0.5          1           1
 L leucine            14.9         29           3
 M methionine          0.5          1           1
 N asparagine          2.1          4           1
 P proline             7.2         14           1
 Q glutamine           5.2         10           1
 R arginine            8.2         16           2
 S serine             11.3         22           2
 T threonine           7.2         14           2
 V valine              5.2         10           1
 W tryptophan          3.1          6           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343661 
LOC100292534          0.995   PREDICTED: hypothetical protein 
LOC100290655          0.995   PREDICTED: hypothetical protein XP_002347968 
KRT9                  0.021   keratin 9 
KCNK4                 0.021   TRAAK 
BRWD3                 0.016   bromodomain and WD repeat domain containing 3 [Homo...
SLC22A10              0.016   solute carrier family 22, member 10 
OR10Q1                0.016   olfactory receptor, family 10, subfamily Q, member 1...
OR2D3                 0.013   olfactory receptor, family 2, subfamily D, member 3 ...
FOXF2                 0.013   forkhead box F2 
KLB                   0.013   klotho beta 
DLG5                  0.013   discs large homolog 5 
C6orf127              0.013   hypothetical protein LOC340204 
SHE                   0.010   Src homology 2 domain containing E 
DHX57                 0.010   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
KRTAP19-6             0.010   keratin associated protein 19-6 
LOC730236             0.008   PREDICTED: hypothetical protein 
LOC100292005          0.008   PREDICTED: hypothetical protein XP_002345577 
LOC730236             0.008   PREDICTED: hypothetical protein 
LOC100290520          0.008   PREDICTED: hypothetical protein XP_002348255 
LOC100287616          0.008   PREDICTED: hypothetical protein XP_002343393 
LOC730236             0.008   PREDICTED: hypothetical protein 
LOC100289544          0.008   PREDICTED: hypothetical protein XP_002342244 
BHLHE22               0.008   basic helix-loop-helix domain containing, class B, 5...
PURB                  0.008   purine-rich element binding protein B 
PRR12                 0.008   proline rich 12 
FAM120AOS             0.008   hypothetical protein LOC158293 
JPH3                  0.008   junctophilin 3 
PKD2                  0.008   polycystin 2 
JPH2                  0.008   junctophilin 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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