Guide to the Human Genome
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Name: LOC100290655 Sequence: fasta or formatted (215aa) NCBI GI: 239751700
Description:

PREDICTED: hypothetical protein XP_002347968

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          8           2
 C cysteine            3.7          8           1
 D aspartate           1.4          3           1
 E glutamate           2.3          5           1
 F phenylalanine       4.2          9           2
 G glycine            13.0         28           2
 H histidine           2.3          5           1
 I isoleucine          1.9          4           1
 K lysine              0.5          1           1
 L leucine            14.0         30           3
 M methionine          1.4          3           1
 N asparagine          1.9          4           1
 P proline             7.0         15           1
 Q glutamine           4.7         10           1
 R arginine            8.8         19           2
 S serine             12.1         26           2
 T threonine           7.4         16           2
 V valine              5.1         11           1
 W tryptophan          3.7          8           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347968 
LOC100292534          1.000   PREDICTED: hypothetical protein 
LOC100288150          0.897   PREDICTED: hypothetical protein XP_002343661 
KRT9                  0.019   keratin 9 
KCNK4                 0.019   TRAAK 
SLC22A10              0.014   solute carrier family 22, member 10 
OR10Q1                0.014   olfactory receptor, family 10, subfamily Q, member 1...
OR2D3                 0.012   olfactory receptor, family 2, subfamily D, member 3 ...
BRWD3                 0.012   bromodomain and WD repeat domain containing 3 [Homo...
FOXF2                 0.012   forkhead box F2 
KLB                   0.012   klotho beta 
LOC100287616          0.012   PREDICTED: hypothetical protein XP_002343393 
DLG5                  0.012   discs large homolog 5 
C6orf127              0.012   hypothetical protein LOC340204 
SHE                   0.009   Src homology 2 domain containing E 
DHX57                 0.009   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
KRTAP19-6             0.009   keratin associated protein 19-6 
LOC100292005          0.007   PREDICTED: hypothetical protein XP_002345577 
LOC100290520          0.007   PREDICTED: hypothetical protein XP_002348255 
LOC100289544          0.007   PREDICTED: hypothetical protein XP_002342244 
JPH3                  0.007   junctophilin 3 
BHLHE22               0.007   basic helix-loop-helix domain containing, class B, 5...
PURB                  0.007   purine-rich element binding protein B 
PRR12                 0.007   proline rich 12 
FAM120AOS             0.007   hypothetical protein LOC158293 
LOC100293493          0.007   PREDICTED: hypothetical protein 
LOC100290633          0.007   PREDICTED: hypothetical protein XP_002346942 
LOC100287877          0.007   PREDICTED: hypothetical protein XP_002342071 
JPH2                  0.007   junctophilin 2 isoform 1 
ARHGEF17              0.007   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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