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Search of human proteins with 5730112
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens] 227 1e-60
gi|172072620 vesicle-associated membrane protein 2 (synaptobrevi... 64 3e-11
gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens] 62 7e-11
gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens] 61 2e-10
gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo... 60 4e-10
gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Hom... 58 2e-09
gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo... 58 2e-09
gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Ho... 52 1e-07
gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo... 52 1e-07
gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens] 49 9e-07
gi|4507285 syntaxin 10 [Homo sapiens] 29 0.70
gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens] 29 0.91
gi|11038676 CD79B antigen isoform 2 precursor [Homo sapiens] 29 0.91
gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens] 29 0.91
gi|5032131 syntaxin 6 [Homo sapiens] 29 0.91
gi|38454326 CD38 antigen [Homo sapiens] 28 1.2
gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens] 28 1.6
gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens] 28 1.6
gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens] 28 1.6
gi|157364974 sucrase-isomaltase [Homo sapiens] 27 2.7
gi|24797067 major histocompatibility complex, class I, A precurs... 27 3.5
gi|150010604 kinesin family member 4B [Homo sapiens] 27 4.5
gi|149158702 major histocompatibility complex, class I, F isofor... 27 4.5
gi|4505243 myelin protein zero [Homo sapiens] 27 4.5
gi|189217915 syntaxin binding protein 5 (tomosyn) isoform b [Hom... 27 4.5
gi|189217897 syntaxin binding protein 5 (tomosyn) isoform a [Hom... 27 4.5
gi|117168277 amino acid transporter system A1 [Homo sapiens] 26 5.9
gi|117168275 amino acid transporter system A1 [Homo sapiens] 26 5.9
gi|39930343 transmembrane and coiled-coil domain family 1 isofor... 26 5.9
gi|190014612 transmembrane and coiled-coil domain family 1 isofo... 26 5.9
>gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]
Length = 116
Score = 227 bits (579), Expect = 1e-60
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MAGIELERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQ 60
MAGIELERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQ
Sbjct: 1 MAGIELERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQ 60
Query: 61 KKCWENIRYRICVGLVVVGVLLIILIVLLVVFLPQSSDSSSAPRTQDAGIASGPGN 116
KKCWENIRYRICVGLVVVGVLLIILIVLLVVFLPQSSDSSSAPRTQDAGIASGPGN
Sbjct: 61 KKCWENIRYRICVGLVVVGVLLIILIVLLVVFLPQSSDSSSAPRTQDAGIASGPGN 116
>gi|172072620 vesicle-associated membrane protein 2 (synaptobrevin
2) [Homo sapiens]
Length = 116
Score = 63.9 bits (154), Expect = 3e-11
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 6 LERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWE 65
L++ Q Q +EV +IMR N KVLER KL+EL R+D L +S F + L +K W+
Sbjct: 32 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 91
Query: 66 NIRYRICVGLVVVGVLLIILI 86
N++ I +G++ +L+II++
Sbjct: 92 NLKMMIILGVICAIILIIIIV 112
>gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens]
Length = 141
Score = 62.4 bits (150), Expect = 7e-11
Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 5 ELERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCW 64
+++ Q Q +EV ++M+ N KV+ERG +L ELQ +S+ L D ++ F+ ++ L ++ W
Sbjct: 52 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 111
Query: 65 ENIRYRICVGLVVVGVLLIILIVLLVV 91
+ + + L V +LL+++I+L+V+
Sbjct: 112 RGCKIKAIMAL-VAAILLLVIIILIVM 137
>gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens]
Length = 100
Score = 60.8 bits (146), Expect = 2e-10
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 6 LERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWE 65
L++ Q Q +EV +IMR N KVLER KL+EL R+D L +S F + L +K W+
Sbjct: 15 LQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 74
Query: 66 NIRYRICVGLVVVGVLLIILIVLLV 90
N + +G+ V+ + +II+IV +V
Sbjct: 75 NCK-MWAIGITVLVIFIIIIIVWVV 98
>gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo
sapiens]
Length = 118
Score = 60.1 bits (144), Expect = 4e-10
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 6 LERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWE 65
L++ Q Q EV +I+R N KVLER KL+EL R+D L +S F + L +K W+
Sbjct: 34 LQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWK 93
Query: 66 NIRYRICVGLVVVGVLLIILIVLLVVF 92
N C ++++G + I++V++V++
Sbjct: 94 N-----CKMMIMLGAICAIIVVVIVIY 115
>gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Homo
sapiens]
Length = 117
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 6 LERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWE 65
L++ Q Q EV +I+R N KVLER KL+EL R+D L +S F + L +K W+
Sbjct: 34 LQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWK 93
Query: 66 NIRYRICVGLVVVGVLLIILIVLLV 90
N C ++++G + I++V++V
Sbjct: 94 N-----CKMMIMLGAICAIIVVVIV 113
>gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo
sapiens]
Length = 116
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 6 LERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWE 65
L++ Q Q EV +I+R N KVLER KL+EL R+D L +S F + L +K W+
Sbjct: 34 LQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWK 93
Query: 66 NIRYRICVGLVVVGVLLIILIVLLV 90
N C ++++G + I++V++V
Sbjct: 94 N-----CKMMIMLGAICAIIVVVIV 113
>gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Homo
sapiens]
Length = 179
Score = 52.0 bits (123), Expect = 1e-07
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 10 QQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWENIRY 69
Q Q +E+ IM N V +RG +L L +++ L+D S TF T++NLA+ C +N++
Sbjct: 89 QAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKL 148
Query: 70 RICVGLVVVGVLLIILIV 87
I + ++V ++ I +IV
Sbjct: 149 TIII--IIVSIVFIYIIV 164
>gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo
sapiens]
Length = 220
Score = 52.0 bits (123), Expect = 1e-07
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 10 QQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWENIRY 69
Q Q +E+ IM N V +RG +L L +++ L+D S TF T++NLA+ C +N++
Sbjct: 130 QAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKL 189
Query: 70 RICVGLVVVGVLLIILIV 87
I + ++V ++ I +IV
Sbjct: 190 TIII--IIVSIVFIYIIV 205
>gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens]
Length = 100
Score = 48.9 bits (115), Expect = 9e-07
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 10 QQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWENIRY 69
Q + V IM N ++L RG L L+ +++ L S F T+Q +A+K W+N++
Sbjct: 17 QSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVKM 76
Query: 70 RICVGLVVVGVLLIILIVLLVVF 92
+V++ V++ I+I+ +V+F
Sbjct: 77 -----IVLICVIVFIIILFIVLF 94
>gi|4507285 syntaxin 10 [Homo sapiens]
Length = 249
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 15 EVTEIMRNNFGKVL-ERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWENIRYRICV 73
+V + M G+ L E+G+ L Q D S + + LA+ + R + C
Sbjct: 175 QVLKHMSGRVGEELDEQGIMLDAFAQEMDHT---QSRMDGVLRKLAKVSHMTSDRRQWCA 231
Query: 74 GLVVVGVLLIILIVL 88
V+VGVLL++LI+L
Sbjct: 232 IAVLVGVLLLVLILL 246
>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
Length = 230
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 74 GLVVVGVLLIILIVLLVVFLPQSSDSSSAPRTQD 107
G++++ LLIIL +++ +FL D S A +D
Sbjct: 161 GIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEED 194
>gi|11038676 CD79B antigen isoform 2 precursor [Homo sapiens]
Length = 125
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 74 GLVVVGVLLIILIVLLVVFLPQSSDSSSAPRTQD 107
G++++ LLIIL +++ +FL D S A +D
Sbjct: 56 GIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEED 89
>gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]
Length = 229
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 74 GLVVVGVLLIILIVLLVVFLPQSSDSSSAPRTQD 107
G++++ LLIIL +++ +FL D S A +D
Sbjct: 160 GIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEED 193
>gi|5032131 syntaxin 6 [Homo sapiens]
Length = 255
Score = 28.9 bits (63), Expect = 0.91
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 4 IELERCQQQA-----NEVTEIMRNNFGKVLERGVKLA-ELQQRSDQLLDMS-------ST 50
IE ++ QQQ +E E++ + G + ++ EL++++ L D S S
Sbjct: 155 IEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSR 214
Query: 51 FNKTTQNLAQKKCWENIRYRICVGLVVVGVLLIILIVLLVV 91
+ + LA+ + R + C ++ VLL++LI+ LV+
Sbjct: 215 LDNVMKKLAKVSHMTSDRRQWCAIAILFAVLLVVLILFLVL 255
>gi|38454326 CD38 antigen [Homo sapiens]
Length = 300
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 63 CWENIRYRICVGLVVVGVLLIILIVLLVVFLPQSSDSSSAPRT 105
C + R ++C+G V +L++IL+V+L V +P+ S P T
Sbjct: 16 CRLSRRAQLCLG---VSILVLILVVVLAVVVPRWRQQWSGPGT 55
>gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens]
Length = 1072
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 55 TQNLAQKKCWENIRYRICVGL-VVVGVLLIILIVLLVV 91
TQ++A +E + R+ + + VV G++ +ILI+L+VV
Sbjct: 862 TQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVV 899
>gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]
Length = 1200
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 55 TQNLAQKKCWENIRYRICVGL-VVVGVLLIILIVLLVV 91
TQ++A +E + R+ + + VV G++ +ILI+L+VV
Sbjct: 815 TQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVV 852
>gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens]
Length = 1069
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 55 TQNLAQKKCWENIRYRICVGL-VVVGVLLIILIVLLVV 91
TQ++A +E + R+ + + VV G++ +ILI+L+VV
Sbjct: 862 TQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVV 899
>gi|157364974 sucrase-isomaltase [Homo sapiens]
Length = 1827
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 58 LAQKKCWENIRYRICVGLVVVGVLLIILIVLLVVFLP---QSSDSSSAPRT 105
+A+KK + + + V V+V ++ I LIV+L P + SDS+S P T
Sbjct: 1 MARKK-FSGLEISLIVLFVIVTIIAIALIVVLATKTPAVDEISDSTSTPAT 50
>gi|24797067 major histocompatibility complex, class I, A precursor
[Homo sapiens]
Length = 365
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 71 ICVGLVVVGVLLIILIVLLVVFLPQSSDSSSAPRTQDAGIASGPGN 116
I GLV++G ++ +V V++ +SSD TQ A S G+
Sbjct: 311 IIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGS 356
>gi|150010604 kinesin family member 4B [Homo sapiens]
Length = 1234
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 36 ELQQRSDQLLDMSSTFNKTTQNLAQKKCWENI 67
E++ RS Q+ D+ K+CWENI
Sbjct: 826 EMELRSAQIADLQQKLLDAESEDRPKQCWENI 857
>gi|149158702 major histocompatibility complex, class I, F isoform 1
precursor [Homo sapiens]
Length = 442
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 71 ICVGLVVVGVLLIILIVLLVVFLPQSSDSSSAPRTQDAGIASGPGN 116
I GLVV+G ++ +V V++ +SSD + +Q A + GN
Sbjct: 308 IVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGN 353
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 68 RYRICVGLVVVGVLLIILIVLLVVFL 93
RY + +G V+ GVL ++L++LL+ ++
Sbjct: 163 RYGVVLGAVIGGVLGVVLLLLLLFYV 188
>gi|189217915 syntaxin binding protein 5 (tomosyn) isoform b [Homo
sapiens]
Length = 1151
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 29 ERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQK 61
ERG KL +L++R+ +L + +F+K + K
Sbjct: 1110 ERGQKLGDLEERTAAMLSSAESFSKHAHEIMLK 1142
>gi|189217897 syntaxin binding protein 5 (tomosyn) isoform a [Homo
sapiens]
Length = 1115
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 29 ERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQK 61
ERG KL +L++R+ +L + +F+K + K
Sbjct: 1074 ERGQKLGDLEERTAAMLSSAESFSKHAHEIMLK 1106
>gi|117168277 amino acid transporter system A1 [Homo sapiens]
Length = 487
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 68 RYRICVGLVVVGVLLIILIVLLVVFLPQSSD 98
++ +C VV +LL++ I LLV+F+P D
Sbjct: 387 KFNLCRHTVVTCILLVV-INLLVIFIPSMKD 416
>gi|117168275 amino acid transporter system A1 [Homo sapiens]
Length = 487
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 68 RYRICVGLVVVGVLLIILIVLLVVFLPQSSD 98
++ +C VV +LL++ I LLV+F+P D
Sbjct: 387 KFNLCRHTVVTCILLVV-INLLVIFIPSMKD 416
>gi|39930343 transmembrane and coiled-coil domain family 1 isoform b
[Homo sapiens]
Length = 329
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 15/55 (27%)
Query: 36 ELQQRSDQLLDMSSTFNKTTQNLAQKKCWENIRYRICVGLVVVGVLLIILIVLLV 90
ELQQ+ Q++ + N T +NL K ++ +LL ++ VLLV
Sbjct: 239 ELQQQQQQVVQLEGLENATARNLLGK---------------LINILLAVMAVLLV 278
>gi|190014612 transmembrane and coiled-coil domain family 1 isoform
c [Homo sapiens]
Length = 539
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 15/55 (27%)
Query: 36 ELQQRSDQLLDMSSTFNKTTQNLAQKKCWENIRYRICVGLVVVGVLLIILIVLLV 90
ELQQ+ Q++ + N T +NL K ++ +LL ++ VLLV
Sbjct: 449 ELQQQQQQVVQLEGLENATARNLLGK---------------LINILLAVMAVLLV 488
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,871,569
Number of Sequences: 37866
Number of extensions: 128564
Number of successful extensions: 717
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 34
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.