Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD79B Sequence: fasta or formatted (230aa) NCBI GI: 90193592
Description:

CD79B antigen isoform 3 precursor

Referenced in:

B cells

Other entries for this name:
alt prot [229aa] CD79B antigen isoform 1 precursor
alt prot [125aa] CD79B antigen isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         14           2
 C cysteine            2.2          5           1
 D aspartate           4.8         11           2
 E glutamate           7.8         18           2
 F phenylalanine       3.0          7           1
 G glycine             6.5         15           1
 H histidine           1.7          4           1
 I isoleucine          6.5         15           2
 K lysine              5.2         12           1
 L leucine            10.4         24           5
 M methionine          3.9          9           1
 N asparagine          3.9          9           2
 P proline             3.9          9           1
 Q glutamine           6.1         14           2
 R arginine            5.7         13           1
 S serine              7.0         16           1
 T threonine           5.7         13           1
 V valine              4.8         11           1
 W tryptophan          2.2          5           1
 Y tyrosine            2.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD79B antigen isoform 3 precursor 
CD79B                 0.986   CD79B antigen isoform 1 precursor 
CD79B                 0.334   CD79B antigen isoform 2 precursor 
CD79A                 0.072   CD79A antigen isoform 1 precursor 
CD8B                  0.032   CD8b antigen isoform 1 precursor 
CD8B                  0.032   CD8b antigen isoform 5 precursor 
CD8B                  0.032   CD8b antigen isoform 2 precursor 
CD8B                  0.032   CD8b antigen isoform 4 precursor 
CD8B                  0.032   CD8b antigen isoform 3 precursor 
LOC100288993          0.032   PREDICTED: hypothetical protein XP_002342967 
KIT                   0.029   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncoge...
KIT                   0.029   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene...
LOC653882             0.029   PREDICTED: similar to v-kit Hardy-Zuckerman 4 feline...
LOC642424             0.027   PREDICTED: similar to hCG1742442 
LOC642424             0.027   PREDICTED: similar to hCG1742442 
LOC642424             0.027   PREDICTED: similar to hCG1742442 
LOC100132426          0.027   PREDICTED: similar to hCG1742442 
LOC642838             0.027   PREDICTED: similar to hCG1742442 
CD7                   0.027   CD7 antigen precursor 
LOC100287723          0.025   PREDICTED: hypothetical protein XP_002342271 
CEACAM1               0.020   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.020   carcinoembryonic antigen-related cell adhesion molec...
CD79A                 0.020   CD79A antigen isoform 2 precursor 
OBSCN                 0.018   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.018   obscurin, cytoskeletal calmodulin and titin-interac...
LOC652493             0.018   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC650405             0.018   PREDICTED: similar to hCG2042707 
ROBO2                 0.018   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.018   roundabout, axon guidance receptor, homolog 2 isofor...
VSTM2A                0.018   V-set and transmembrane domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press