VAMP1 27525

Name: VAMP1	Sequence: fasta or formatted (117aa)		NCBI GI: 40549446
Description: vesicle-associated membrane protein 1 isoform 2		Referenced in: ER, Golgi, and the Secretory Pathway Synapses
Other entries for this name: alt prot [118aa] vesicle-associated membrane protein 1 isoform 1 alt prot [116aa] vesicle-associated membrane protein 1 isoform 3
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.1 13 2 C cysteine 1.7 2 1 D aspartate 5.1 6 2 E glutamate 6.0 7 2 F phenylalanine 0.9 1 1 G glycine 6.8 8 3 H histidine 0.0 0 0 I isoleucine 6.0 7 2 K lysine 6.8 8 1 L leucine 6.0 7 1 M methionine 4.3 5 2 N asparagine 3.4 4 1 P proline 7.7 9 3 Q glutamine 6.8 8 2 R arginine 6.0 7 2 S serine 6.0 7 2 T threonine 3.4 4 1 V valine 8.5 10 3 W tryptophan 1.7 2 2 Y tyrosine 1.7 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vesicle-associated membrane protein 1 isoform 2 [Hom... VAMP1 0.962 vesicle-associated membrane protein 1 isoform 3 [Homo... VAMP1 0.962 vesicle-associated membrane protein 1 isoform 1 [Homo... VAMP2 0.720 vesicle-associated membrane protein 2 (synaptobrevi... VAMP3 0.536 vesicle-associated membrane protein 3 VAMP4 0.270 vesicle-associated membrane protein 4 VAMP8 0.209 vesicle-associated membrane protein 8 VAMP5 0.156 vesicle-associated membrane protein 5 VAMP7 0.118 vesicle-associated membrane protein 7 isoform 2 [Ho... VAMP7 0.118 vesicle-associated membrane protein 7 isoform 1 [Homo... C6orf174 0.090 hypothetical protein LOC387104 SGIP1 0.047 SH3-domain GRB2-like (endophilin) interacting prote... SEC22B 0.047 SEC22 vesicle trafficking protein homolog B BAT3 0.033 HLA-B associated transcript-3 isoform b BAT3 0.033 HLA-B associated transcript-3 isoform b BAT3 0.033 HLA-B associated transcript-3 isoform b BAT3 0.033 HLA-B associated transcript-3 isoform a FBRSL1 0.033 fibrosin-like 1 CASKIN1 0.028 CASK interacting protein 1 ZC3H10 0.028 zinc finger CCCH-type containing 10 MAPKBP1 0.028 mitogen-activated protein kinase binding protein 1 ... MAPKBP1 0.028 mitogen-activated protein kinase binding protein 1 ... FMNL1 0.028 formin-like 1 TNRC6B 0.028 trinucleotide repeat containing 6B isoform 2 TNRC6B 0.028 trinucleotide repeat containing 6B isoform 1 EPB41L3 0.028 erythrocyte membrane protein band 4.1-like 3 COL10A1 0.028 type X collagen alpha 1 precursor YKT6 0.028 YKT6 v-SNARE protein GPR37 0.024 G protein-coupled receptor 37 PLEKHO2 0.024 pleckstrin homology domain containing, family O memb... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.