Guide to the Human Genome
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Name: STX10 Sequence: fasta or formatted (249aa) NCBI GI: 4507285
Description:

syntaxin 10

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         21           2
 C cysteine            0.8          2           1
 D aspartate           6.0         15           1
 E glutamate          10.4         26           2
 F phenylalanine       2.8          7           2
 G glycine             5.6         14           1
 H histidine           1.6          4           1
 I isoleucine          4.0         10           1
 K lysine              4.0         10           1
 L leucine            12.0         30           3
 M methionine          4.4         11           1
 N asparagine          2.4          6           2
 P proline             2.4          6           1
 Q glutamine           7.2         18           2
 R arginine            6.8         17           2
 S serine              6.4         16           1
 T threonine           3.6          9           2
 V valine              8.4         21           2
 W tryptophan          1.6          4           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   syntaxin 10 
STX6                  0.604   syntaxin 6 
STX8                  0.059   syntaxin 8 
SNAP25                0.046   synaptosomal-associated protein 25 isoform SNAP25A [...
SNAP25                0.041   synaptosomal-associated protein 25 isoform SNAP25B [...
STX3                  0.041   syntaxin 3 
CCDC157               0.030   coiled-coil domain containing 157 
STX16                 0.028   syntaxin 16 isoform a 
STX16                 0.028   syntaxin 16 isoform d 
STX16                 0.028   syntaxin 16 isoform c 
STX16                 0.028   syntaxin 16 isoform b 
CGN                   0.028   cingulin 
CEP110                0.024   centrosomal protein 110kDa 
MACF1                 0.022   microfilament and actin filament cross-linker protei...
MACF1                 0.022   microfilament and actin filament cross-linker protei...
CCDC102A              0.022   coiled-coil domain containing 102A 
MYH11                 0.022   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.022   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.022   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.022   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CCDC158               0.020   coiled-coil domain containing 158 
STX1B                 0.020   syntaxin 1B 
DCTN1                 0.020   dynactin 1 isoform 4 
DCTN1                 0.020   dynactin 1 isoform 3 
DCTN1                 0.020   dynactin 1 isoform 2 
DCTN1                 0.020   dynactin 1 isoform 1 
ERC1                  0.017   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.017   RAB6-interacting protein 2 isoform delta 
STX1A                 0.017   syntaxin 1A (brain) 
WDR87                 0.017   NYD-SP11 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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