Guide to the Human Genome
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Name: VAMP1 Sequence: fasta or formatted (118aa) NCBI GI: 7657673
Description:

vesicle-associated membrane protein 1 isoform 1

Referenced in:

ER, Golgi, and the Secretory Pathway
Synapses

Other entries for this name:
alt prot [117aa] vesicle-associated membrane protein 1 isoform 2
alt prot [116aa] vesicle-associated membrane protein 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         13           2
 C cysteine            1.7          2           1
 D aspartate           5.1          6           2
 E glutamate           5.9          7           2
 F phenylalanine       2.5          3           2
 G glycine             6.8          8           3
 H histidine           0.0          0           0
 I isoleucine          6.8          8           2
 K lysine              5.9          7           1
 L leucine             5.9          7           1
 M methionine          4.2          5           2
 N asparagine          3.4          4           1
 P proline             7.6          9           3
 Q glutamine           6.8          8           2
 R arginine            5.1          6           2
 S serine              5.1          6           2
 T threonine           4.2          5           1
 V valine              8.5         10           3
 W tryptophan          1.7          2           2
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vesicle-associated membrane protein 1 isoform 1 [Homo... 
VAMP1                 0.949   vesicle-associated membrane protein 1 isoform 2 [Hom...
VAMP1                 0.949   vesicle-associated membrane protein 1 isoform 3 [Homo...
VAMP2                 0.743   vesicle-associated membrane protein 2 (synaptobrevi...
VAMP3                 0.537   vesicle-associated membrane protein 3 
VAMP4                 0.262   vesicle-associated membrane protein 4 
VAMP8                 0.215   vesicle-associated membrane protein 8 
VAMP5                 0.164   vesicle-associated membrane protein 5 
VAMP7                 0.107   vesicle-associated membrane protein 7 isoform 2 [Ho...
VAMP7                 0.107   vesicle-associated membrane protein 7 isoform 1 [Homo...
C6orf174              0.089   hypothetical protein LOC387104 
SEC22B                0.047   SEC22 vesicle trafficking protein homolog B 
SGIP1                 0.047   SH3-domain GRB2-like (endophilin) interacting prote...
BAT3                  0.033   HLA-B associated transcript-3 isoform b 
BAT3                  0.033   HLA-B associated transcript-3 isoform b 
BAT3                  0.033   HLA-B associated transcript-3 isoform b 
BAT3                  0.033   HLA-B associated transcript-3 isoform a 
FBRSL1                0.033   fibrosin-like 1 
CASKIN1               0.028   CASK interacting protein 1 
ZC3H10                0.028   zinc finger CCCH-type containing 10 
MAPKBP1               0.028   mitogen-activated protein kinase binding protein 1 ...
MAPKBP1               0.028   mitogen-activated protein kinase binding protein 1 ...
FMNL1                 0.028   formin-like 1 
TNRC6B                0.028   trinucleotide repeat containing 6B isoform 2 
TNRC6B                0.028   trinucleotide repeat containing 6B isoform 1 
EPB41L3               0.028   erythrocyte membrane protein band 4.1-like 3 
COL10A1               0.028   type X collagen alpha 1 precursor 
YKT6                  0.028   YKT6 v-SNARE protein 
GPR37                 0.023   G protein-coupled receptor 37 
PLEKHO2               0.023   pleckstrin homology domain containing, family O memb...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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