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Search of human proteins with 5729812
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5729812 elongation factor RNA polymerase II [Homo sapiens]
(621 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5729812 elongation factor RNA polymerase II [Homo sapiens] 1252 0.0
gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens] 553 e-157
gi|13376768 elongation factor RNA polymerase II-like 3 [Homo sap... 126 5e-29
gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens] 89 1e-17
gi|4505487 occludin [Homo sapiens] 84 4e-16
gi|13375756 occludin/ELL domain containing 1 [Homo sapiens] 60 6e-09
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 51 3e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 50 6e-06
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 3e-04
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 42 0.001
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.006
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 40 0.008
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 40 0.008
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 40 0.008
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 39 0.011
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens] 39 0.011
gi|169207799 PREDICTED: hypothetical protein [Homo sapiens] 39 0.014
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 39 0.014
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 39 0.014
gi|45505151 nuclear factor I/C isoform 2 [Homo sapiens] 39 0.014
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 39 0.014
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 39 0.014
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 39 0.014
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 39 0.019
gi|147905592 coiled-coil domain containing 102B [Homo sapiens] 39 0.019
gi|148233522 coiled-coil domain containing 102B [Homo sapiens] 39 0.019
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 38 0.024
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 38 0.024
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 38 0.024
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 38 0.024
>gi|5729812 elongation factor RNA polymerase II [Homo sapiens]
Length = 621
Score = 1252 bits (3240), Expect = 0.0
Identities = 621/621 (100%), Positives = 621/621 (100%)
Query: 1 MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIRFQGSQ 60
MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIRFQGSQ
Sbjct: 1 MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIRFQGSQ 60
Query: 61 GHISIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQDKITV 120
GHISIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQDKITV
Sbjct: 61 GHISIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQDKITV 120
Query: 121 CATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPSRKRAT 180
CATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPSRKRAT
Sbjct: 121 CATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPSRKRAT 180
Query: 181 PINLASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKD 240
PINLASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKD
Sbjct: 181 PINLASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKD 240
Query: 241 ALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQPQSTGS 300
ALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQPQSTGS
Sbjct: 241 ALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQPQSTGS 300
Query: 301 LLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPN 360
LLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPN
Sbjct: 301 LLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPN 360
Query: 361 GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPA 420
GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPA
Sbjct: 361 GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPA 420
Query: 421 PTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHAT 480
PTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHAT
Sbjct: 421 PTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHAT 480
Query: 481 PGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLH 540
PGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLH
Sbjct: 481 PGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLH 540
Query: 541 ARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS 600
ARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS
Sbjct: 541 ARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS 600
Query: 601 KLAHIKRLIAEYDQRQLQAWP 621
KLAHIKRLIAEYDQRQLQAWP
Sbjct: 601 KLAHIKRLIAEYDQRQLQAWP 621
>gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens]
Length = 640
Score = 553 bits (1426), Expect = e-157
Identities = 306/642 (47%), Positives = 412/642 (64%), Gaps = 36/642 (5%)
Query: 4 LKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIRFQGSQGHI 63
L+E++ YGLSCGR+ + ++V HVKLT++A+RA E+Y++ ++ + RPSI+FQG G +
Sbjct: 9 LREEQRYGLSCGRLGQDN-ITVLHVKLTETAIRALETYQSHKNLIPFRPSIQFQGLHGLV 67
Query: 64 SIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQDKITVCAT 123
IP+ D E F+FYLSN+G+DNPQGSFDCIQQ SS G L+CLG IQDKITVCAT
Sbjct: 68 KIPKNDPLNEVHNFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQDKITVCAT 127
Query: 124 DDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPSRKRATPIN 183
+DSYQ R+ M QAEEE+R+RS VIK GG Y+GK+VQ RK +D VP RKR+TP+N
Sbjct: 128 NDSYQMTRERMTQAEEESRNRSTKVIKPGGPYVGKRVQIRKAPQAVSDTVPERKRSTPMN 187
Query: 184 LASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALD 243
A+ IRK+ +S S +SQRP+RDRV+HLLAL+ Y+K ELL RLQKDG+ Q DK++L
Sbjct: 188 PANTIRKTHSS-----STISQRPYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLG 242
Query: 244 GLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQPQSTGSLLG 303
+LQQVAN+++KD + TL+D ++K++Q+DWPGYSE D++ L+ VL RKL Q+ G
Sbjct: 243 AILQQVANLNSKDLSYTLKDYVFKELQRDWPGYSEIDRRSLESVLSRKLNPSQNAA---G 299
Query: 304 DPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPNGRE 363
+ SP + S PQKRL +FIDPL NKK RISH T R P +NG L P +
Sbjct: 300 TSRSESPVCSSRDAVSSPQKRLLDSEFIDPLMNKKARISHLTNRVPPTLNGHLN-PTSEK 358
Query: 364 ALLPTPGPPAS----TDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDC-------- 411
+ P PPA+ T ST+LP P + S G +D
Sbjct: 359 SAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDSFSQN 418
Query: 412 ----EHGEAAAPAPTVRLGLP---LLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAE- 463
E + + T LP +L C +P + S S K KKKSKKHK+K++ +
Sbjct: 419 DSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQIKKH 478
Query: 464 -----DKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISS 518
++ L +P + G+ C+ S P S E PDYL+KY AI S
Sbjct: 479 DIETIEEKEEDLKREEEIAKLNNSSPNSSGGVKEDCTASMEP-SAIELPDYLIKYIAIVS 537
Query: 519 SEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEY 578
EQRQ+YK+DFNAEY EYR LHAR+E + RRF +LDAQ ++LS GS+EY+ ++LQEY
Sbjct: 538 YEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEY 597
Query: 579 RKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAW 620
+KIK+++ NY +EK+RCEYLH+KLAHIKRLI E+DQ+Q ++W
Sbjct: 598 QKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESW 639
>gi|13376768 elongation factor RNA polymerase II-like 3 [Homo
sapiens]
Length = 397
Score = 126 bits (317), Expect = 5e-29
Identities = 71/203 (34%), Positives = 111/203 (54%), Gaps = 21/203 (10%)
Query: 434 AQPSRPHGSPSRSKPKKKSKKHKDKERAA-------EDKPRAQLPDCAPATHATPGAPAD 486
+Q P+ P ++ P S+K DK+R+ E+K LP
Sbjct: 191 SQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSPLQGLTNQDLQ 250
Query: 487 T------------PGLNGTCSVS--SVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAE 532
P L + SV S S + PDYLL+Y AI S+EQ+ +Y+ DF +
Sbjct: 251 EGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQHAYEQDFETD 310
Query: 533 YSEYRDLHARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEK 592
Y+EYR LHAR+ ++RF +L A+++++ +G+ EY+ +I+QEY+K +K +Y +EK
Sbjct: 311 YAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEK 370
Query: 593 HRCEYLHSKLAHIKRLIAEYDQR 615
RCEYLH KL+HIK LI E++++
Sbjct: 371 RRCEYLHQKLSHIKGLILEFEEK 393
Score = 58.2 bits (139), Expect = 2e-08
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 18 SDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIRFQGSQGHISIPQPDCPAEARTF 77
+ ++ S+ ++L D+ALRA + + +Q +RP I FQG +G++ +P P F
Sbjct: 17 TQAARTSLLLLRLNDAALRALQECQRQQ----VRPVIAFQGHRGYLRLPGPGWSC---LF 69
Query: 78 SFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQDKITVCATDDS 126
SF +S ++ GS D + Q G L CLGS+++++ + A DS
Sbjct: 70 SFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDS 118
>gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens]
Length = 558
Score = 89.0 bits (219), Expect = 1e-17
Identities = 43/111 (38%), Positives = 75/111 (67%), Gaps = 5/111 (4%)
Query: 507 PDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQL---SQG 563
PDY+ KY I + ++R+ YK F ++SEY++L A ++ + R+F +LDA + +L S+
Sbjct: 440 PDYVAKYPVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVMSRLPHHSES 499
Query: 564 SEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQ 614
+E+E +I +E++K KK + + ++K RC+YL +KL+HIK+ I EYD+
Sbjct: 500 RQEHERI-SRIHEEFKK-KKNDPTFLEKKERCDYLKNKLSHIKQRIQEYDK 548
>gi|4505487 occludin [Homo sapiens]
Length = 522
Score = 84.0 bits (206), Expect = 4e-16
Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 27/235 (11%)
Query: 385 PPRLEPPRAHDPLADVSNDLGHSGRDC-EHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSP 443
PP R P+A SN + R E + P P V LPL + +P S
Sbjct: 311 PPSDYVERVDSPMAYSSNGKVNDKRFYPESSYKSTPVPEVVQELPLTSPVDDFRQPRYS- 369
Query: 444 SRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSSVPTST 503
S + SK+ K RA K Q D + T G D
Sbjct: 370 SGGNFETPSKRAPAKGRAGRSKRTEQ--DHYETDYTTGGESCD----------------- 410
Query: 504 SETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQG 563
D++ +Y I+S +QRQ YK +F+ EY+ L + ++ I + ++LD +L +
Sbjct: 411 ELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREE 470
Query: 564 SEEYETTRGQILQEYRKIK--KTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQ 616
SEEY EY ++K K + +Y +K+ C+ L SKL+HIK+++ +YD+++
Sbjct: 471 SEEYMAA----ADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQK 521
>gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]
Length = 264
Score = 60.1 bits (144), Expect = 6e-09
Identities = 63/270 (23%), Positives = 95/270 (35%), Gaps = 45/270 (16%)
Query: 367 PTPGPPASTDTLSSSTHLPPRLEPPRA-HD-------------------PLADVSNDLGH 406
PT P + TL + PP PPRA HD P+
Sbjct: 10 PTADPGSELQTLGQAARRPP---PPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTR 66
Query: 407 SGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKP 466
R H P P ++ P + P P +P+ K K K+ ED+
Sbjct: 67 GSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPP------CQPQPGPHKAKTKKIVFEDEL 120
Query: 467 RAQ-LPDCAPATHATPGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSSEQRQSY 525
+Q L A P P PDY LKY +SS +R Y
Sbjct: 121 LSQALLGAKKPIGAIPKGHKPRP---------------HPVPDYELKYPPVSSERERSRY 165
Query: 526 KNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTN 585
F +Y E+ +L + + QL+A L L + E + ++K+ +
Sbjct: 166 VAVFQDQYGEFLELQHEVGCAQAKLRQLEALLSSLPPPQSQKEAQVAARVWREFEMKRMD 225
Query: 586 TNYSQEKHRCEYLHSKLAHIKRLIAEYDQR 615
+ ++ RC YL KL H+K I ++D +
Sbjct: 226 PGFLDKQARCHYLKGKLRHLKTQIQKFDDQ 255
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 51.2 bits (121), Expect = 3e-06
Identities = 51/201 (25%), Positives = 65/201 (32%), Gaps = 25/201 (12%)
Query: 303 GDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGV--PN 360
G P PPG G SP Q P A P G +G P
Sbjct: 177 GPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPS---------GPPGPPGAIGPSGPA 227
Query: 361 GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPA 420
G++ PG P PP ++ P + G GR+ E GE AP
Sbjct: 228 GKDGESGRPGRPGERGLPG-----PPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Query: 421 PTVRLGLPLLTDCAQPSRPHGSPSR----SKPKKKSKKHKDKERAAEDKPRAQLPDCAPA 476
GLP P P G+P P + D R ++ +P P
Sbjct: 283 LKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG 342
Query: 477 THATPGA-----PADTPGLNG 492
+PGA PA +PG NG
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNG 363
Score = 36.2 bits (82), Expect = 0.092
Identities = 54/219 (24%), Positives = 64/219 (29%), Gaps = 24/219 (10%)
Query: 295 PQSTGSLLGDPAASSPPGERGRSASPPQK-RLQPPDFIDPLANKKPRISHFTQ-----RA 348
P G P + PG +G +P +K PP P P Q R
Sbjct: 805 PPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERG 864
Query: 349 QPAVNGKLGVPNGREALLP-----TPGPPASTDTLSSSTHLPPRLE-----PPRAHDPLA 398
P G G P R P PGPP + + P P P
Sbjct: 865 SPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKG 924
Query: 399 DVSNDLGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQP---SRPHGSPSRSKPKKKSKKH 455
D G G G AP P G+ A P P GSP K +S K
Sbjct: 925 DAGQP-GEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKP 983
Query: 456 KDKERAAEDKPRAQLPDCAPATHATPGAPA--DTPGLNG 492
+ E P P P T G P PG +G
Sbjct: 984 GANGLSGERGPPG--PQGLPGLAGTAGEPGRDGNPGSDG 1020
Score = 35.0 bits (79), Expect = 0.21
Identities = 45/193 (23%), Positives = 60/193 (31%), Gaps = 30/193 (15%)
Query: 303 GDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPNGR 362
G P PPG G + +P + P K ++ P G G P
Sbjct: 897 GSPGKDGPPGPAGNTGAPGSPGVSGP---------KGDAGQPGEKGSPGAQGPPGAPG-- 945
Query: 363 EALLPTPGPPASTDTLSSSTHL--PPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPA 420
P ++ + L PP + PR V + G G + GE P
Sbjct: 946 ---------PLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPG 996
Query: 421 PTVRLGLPLLTDCA-QPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHA 479
P GLP L A +P R S P + +R P A AP H
Sbjct: 997 PQ---GLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGA---PGAPG-HP 1049
Query: 480 TPGAPADTPGLNG 492
P P G +G
Sbjct: 1050 GPPGPVGPAGKSG 1062
Score = 31.6 bits (70), Expect = 2.3
Identities = 52/211 (24%), Positives = 63/211 (29%), Gaps = 32/211 (15%)
Query: 303 GDPAASSPPGERGRSASPPQKRLQ--PPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPN 360
G P + P G++G + P + LQ P P N KP +P G G P
Sbjct: 618 GPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKP--------GEPGPKGDAGAPG 669
Query: 361 GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPA 420
P D + PP L A P + G G + G A P
Sbjct: 670 ---------APGGKGDAGAPGERGPPGL----AGAP--GLRGGAGPPGPEGGKGAAGPPG 714
Query: 421 PTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHAT 480
P G P L GSP K + +D PR P A
Sbjct: 715 PPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPA- 773
Query: 481 PGAPAD-----TPGLNGTCSVSSVPTSTSET 506
G P D PGL G P ET
Sbjct: 774 -GQPGDKGEGGAPGLPGIAGPRGSPGERGET 803
Score = 31.6 bits (70), Expect = 2.3
Identities = 53/213 (24%), Positives = 66/213 (30%), Gaps = 42/213 (19%)
Query: 295 PQSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLA-NKKPRISHFTQRAQPAVN 353
P L G P PPGE G+ P K D P A K +R P +
Sbjct: 634 PPGPQGLQGLPGTGGPPGENGKPGEPGPK----GDAGAPGAPGGKGDAGAPGERGPPGLA 689
Query: 354 GKLGV--------PNGREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLG 405
G G+ P G + PGPP + T P L+ + LG
Sbjct: 690 GAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGT--------PGLQ------GMPGERGGLG 735
Query: 406 HSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPS-RSKPKKKSKKHKDKERAAED 464
G + GE P G+P P+ P G P +P K E A
Sbjct: 736 SPGPKGDKGEPGGPGAD---GVPGKDGPRGPTGPIGPPGPAGQPGDKG------EGGAPG 786
Query: 465 KPRAQLPDCAPATHATPGAPA-----DTPGLNG 492
P P +P G P PG NG
Sbjct: 787 LPGIAGPRGSPGERGETGPPGPAGFPGAPGQNG 819
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 50.1 bits (118), Expect = 6e-06
Identities = 69/243 (28%), Positives = 91/243 (37%), Gaps = 41/243 (16%)
Query: 305 PAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPNGREA 364
P A++PP +G A+PP K P + P + K PA + G P A
Sbjct: 1266 PPAATPPSLKGGLATPPHKGAPNPAVVTPPSPK----------GGPATSPPKGAPTPPAA 1315
Query: 365 LLPTP-GPPASTDTLSSSTHLPPRLEPPRAHD----PLADVSNDLGHSGRDCEHGEAAAP 419
P+P G P + + T PP + PP P S+ G + + G
Sbjct: 1316 TPPSPKGSPGTPPPKGAPT--PPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPA 1373
Query: 420 APTVRLGLPLLTDCAQPSR------PHGSPSRS-----KPKKKSKKHKDKERAAEDK--- 465
A G P +T P R P G P+ PKK +E AA
Sbjct: 1374 ATPSHKGGPAMTP-PSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGD 1432
Query: 466 --PRAQLP---DCAPATHATPGAPADTPGLNGTCSVSSV-PTSTSETPDYLLKYAAISSS 519
P A P APAT A G PA TP G ++ +V P S E P K A SSS
Sbjct: 1433 LTPPAVTPVSLKKAPATSAPKGGPA-TPSSKGDPTLPAVTPPSPKEPP--APKQVATSSS 1489
Query: 520 EQR 522
++
Sbjct: 1490 PKK 1492
Score = 44.3 bits (103), Expect = 3e-04
Identities = 58/220 (26%), Positives = 76/220 (34%), Gaps = 22/220 (10%)
Query: 305 PAASSPPGERGRSASPPQKRLQPPDFIDPLANK-KPRISHFTQRAQPAVNGKLGVPNGRE 363
P A++PP +G A+P K P + P + K P + F + A P G
Sbjct: 988 PPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSP 1047
Query: 364 ALLPTP--GPPASTDTLSSSTHLP--PRLE---PPRAHDPLADVSNDLGHSGRDCEHGEA 416
A P P P TL S P P L+ P A P + S + A
Sbjct: 1048 AATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPA 1107
Query: 417 AAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPD---- 472
A P P+ + GL P+ P +P P K + A P A P
Sbjct: 1108 ATP-PSPKGGLATPPHKGAPTTPAATP----PSPKGGLATPPPKGAPTTPAATPPSPKGG 1162
Query: 473 -CAPATHATPGAPADTP----GLNGTCSVSSVPTSTSETP 507
P P PA TP G T S PT+ + TP
Sbjct: 1163 LATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1202
Score = 41.2 bits (95), Expect = 0.003
Identities = 55/213 (25%), Positives = 72/213 (33%), Gaps = 31/213 (14%)
Query: 305 PAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPNGREA 364
P A++PP +G A+P K P P + K PA G P A
Sbjct: 942 PPAATPPSPKGGPATPSPKWAPTPPAATPPSPK----------GGPATPSPKGAPTPPAA 991
Query: 365 LLPTP-GPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPAPTV 423
P+P G PA+ + T PP + PP A G S A P+P
Sbjct: 992 TPPSPKGGPATPSPKGAPT--PPAVTPPSPKGSPAATPFPKGASTPPA----ATPPSPK- 1044
Query: 424 RLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPD-----CAPATH 478
G P T P +P+ + P K + A P A P P+
Sbjct: 1045 --GSPAATPL--PKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPK 1100
Query: 479 ATPGAPADTP----GLNGTCSVSSVPTSTSETP 507
P PA TP G T PT+ + TP
Sbjct: 1101 GAPMPPAATPPSPKGGLATPPHKGAPTTPAATP 1133
Score = 40.0 bits (92), Expect = 0.006
Identities = 55/213 (25%), Positives = 69/213 (32%), Gaps = 31/213 (14%)
Query: 305 PAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPNGREA 364
P A++PP +G A+P K P P + K PA G P
Sbjct: 965 PPAATPPSPKGGPATPSPKGAPTPPAATPPSPK----------GGPATPSPKGAPTPPAV 1014
Query: 365 LLPTP-GPPASTDTLSSSTHLPPRLEPPR-----AHDPLADVSNDLGHSGRDCEHGEAAA 418
P+P G PA+T PP PP A PL + + G A
Sbjct: 1015 TPPSPKGSPAAT-PFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPAT 1073
Query: 419 PAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATH 478
P+ G P A P P G P+ PK A P+ L P
Sbjct: 1074 PS---LKGAP-TPPAATPPSPKGGPATPSPKGAPM----PPAATPPSPKGGL--ATPPHK 1123
Query: 479 ATPGAPADTP----GLNGTCSVSSVPTSTSETP 507
P PA TP G T PT+ + TP
Sbjct: 1124 GAPTTPAATPPSPKGGLATPPPKGAPTTPAATP 1156
Score = 38.9 bits (89), Expect = 0.014
Identities = 63/247 (25%), Positives = 88/247 (35%), Gaps = 22/247 (8%)
Query: 295 PQSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQR-AQPAVN 353
P +T S G PA + P +RG + P+ P I PL+ KK + T+ A
Sbjct: 1372 PAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVI-PLSPKKAPATPVTREGAATPSK 1430
Query: 354 GKLGVPNGREALL---PTPGPPASTDTLSSSTHLP--PRLEPPRAHDPLADVSNDLGHSG 408
G L P L P P SS P P + PP +P A S
Sbjct: 1431 GDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSP 1490
Query: 409 RDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPR- 467
+ A PAP LP + + P SR P + K+ A P+
Sbjct: 1491 KKA----PATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKE 1546
Query: 468 AQLPDC--APATHATPG--APADTPGLNGTCSVSSVPTSTSET------PDYLLKYAAIS 517
A +P P+ TP P + P + SS P T T P LL A++
Sbjct: 1547 ALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVT 1606
Query: 518 SSEQRQS 524
S +++
Sbjct: 1607 SPSPKEA 1613
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 44.3 bits (103), Expect = 3e-04
Identities = 64/251 (25%), Positives = 85/251 (33%), Gaps = 44/251 (17%)
Query: 296 QSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDP-----------LANKKPRISHF 344
+S G+ +PA+ P RG A PP K P P L K RIS
Sbjct: 81 RSAGTSSRNPASRPPASGRGERA-PPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRIS-- 137
Query: 345 TQRAQPAVNGKLGVPNGREALL---------PTPGPPAS-----TDTLSSSTHLP---PR 387
+ GK R AL PTPG P+ + + LP P
Sbjct: 138 --AEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPS 195
Query: 388 LEP-PRAHDPLADVSNDLGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRS 446
P P P VS+ HS + P+ L P + + P SP+RS
Sbjct: 196 ARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARS 255
Query: 447 KPKKKS--------KKHKDKERAAEDKPRAQLP--DCAPATHATPGAPADTPGLNGTCSV 496
P + + K K A P+ P D APA +P TP +GT +
Sbjct: 256 GPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKAR 315
Query: 497 SSVPTSTSETP 507
P + TP
Sbjct: 316 PVPPPDNAATP 326
Score = 38.5 bits (88), Expect = 0.019
Identities = 62/232 (26%), Positives = 76/232 (32%), Gaps = 41/232 (17%)
Query: 295 PQSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLA-------------NKKPRI 341
P L P +PP ASPP L P P A P
Sbjct: 618 PPQAPPXLALPPLQAPPSP---PASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQ 674
Query: 342 SHFTQRAQPAVNGKLGVPNGREALLPTP------GPPASTDTLSSSTHLPPRLEPPRAHD 395
+ F+ A P V+ P+ L P PPAS S+T PP+ PP A
Sbjct: 675 APFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP-PPQAPPPLAAP 733
Query: 396 PLADVSNDLGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKH 455
PL + +A P P V PLL A P + SP S P
Sbjct: 734 PLQVPPSPPASP----PMSPSATPPPRVP---PLL--AAPPLQVPPSPPASLPMSP---- 780
Query: 456 KDKERAAEDKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSSVPTSTSETP 507
A+ P+A P A P PA PG +S+P S TP
Sbjct: 781 -----LAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATP 827
Score = 33.9 bits (76), Expect = 0.46
Identities = 61/243 (25%), Positives = 75/243 (30%), Gaps = 56/243 (23%)
Query: 295 PQSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDF---------------IDPLANKKP 339
P SL P A PP A+PP + L P + PLA P
Sbjct: 770 PSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPP 829
Query: 340 RISHFTQRA------QPAVNGKLGVPNGREALLPTPGPPASTDTLSSSTHLPPRLEPPRA 393
+ P + L P PTPGP S + L P PP +
Sbjct: 830 QAPPVLAAPLLQVPPSPPASPTLQAPRRP----PTPGPDTSVSGPRLTLALAPGPPPPPS 885
Query: 394 HDPLADVSN-DLGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKS 452
P + +S DL H +A P G S P G + S P
Sbjct: 886 RSPSSTLSGPDL------AGHSSSATSTPEELRG--------YDSGPEGGAAASPP---- 927
Query: 453 KKHKDKERAAEDKPRAQLPDCAP--ATHATPGAPADTP------GLNGTCSVSSVPTSTS 504
D E AA P A AP A PGAP P +G C++ S
Sbjct: 928 ---PDAELAA-CHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPES 983
Query: 505 ETP 507
TP
Sbjct: 984 ATP 986
Score = 30.0 bits (66), Expect = 6.6
Identities = 54/231 (23%), Positives = 82/231 (35%), Gaps = 32/231 (13%)
Query: 295 PQSTGSLLGDPAASSPPGER---GRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPA 351
P +T L P+ S+PP + A+PP + PP P P + Q P
Sbjct: 336 PLATPLPLAPPSPSAPPSLQTLPSPPATPPSQA--PPSMTTPPMQAPPSL----QTIPP- 388
Query: 352 VNGKLGVPNGREA-LLPTPGPPASTDTLSSSTHL-PPRLEPPRAHDPLADVSNDLGHSGR 409
+ VP+ + L P P + +L ++T L P L+ A +S +
Sbjct: 389 ----IQVPHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQ---ATHSFLTMSPRQTQASL 441
Query: 410 DCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKH--KDKERAAEDKPR 467
A+ P + L PL + P + SP+ S H + A P+
Sbjct: 442 TSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQ 501
Query: 468 AQLPDC-----------APATHATPGAPADTPGLNGTCSVSSVPTSTSETP 507
A L AP + TP A TP L S++ P T+ P
Sbjct: 502 APLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAP 552
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 42.4 bits (98), Expect = 0.001
Identities = 58/253 (22%), Positives = 84/253 (33%), Gaps = 47/253 (18%)
Query: 277 SEGDQQLLKRVLVRKLCQPQSTG-----SLLGDPAASSPPGERG----RSASPPQKRLQP 327
S GD LL + + C P G GD PG G + + P P
Sbjct: 549 SPGDINLLAKDVCND-CPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGP 607
Query: 328 PDFIDPLANKKPR-----ISHFTQRAQPAVNGKLGVPNGREALLPTPGPPASTDTLSSST 382
P P ++ R + + P V G +G P PGPP + ++
Sbjct: 608 PGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGN-------PGPPGADGIAGAAG 660
Query: 383 HLPPRLE-------PPRAHDP--LADVSNDLGHSGRDCEHGEAAAPAPTVRLGLP----- 428
PP ++ PP P L + + G GRD + G P GLP
Sbjct: 661 --PPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGA 718
Query: 429 --------LLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHAT 480
D P S + P ++ KD + Q P P + +
Sbjct: 719 RGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGS 778
Query: 481 PGAPADTPGLNGT 493
PG+P + PG +GT
Sbjct: 779 PGSPGE-PGPSGT 790
Score = 29.6 bits (65), Expect = 8.6
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 295 PQSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFT-QRAQPAVN 353
PQ G + PGE G S +P QK + N P + F R P
Sbjct: 766 PQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKG-------ENGSPGLPGFLGPRGPPGEP 818
Query: 354 GKLGVPNGREALLPTPGPP 372
G+ GVP G+E + PG P
Sbjct: 819 GEKGVP-GKEGVPGKPGEP 836
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 40.0 bits (92), Expect = 0.006
Identities = 61/245 (24%), Positives = 81/245 (33%), Gaps = 44/245 (17%)
Query: 296 QSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFID-----------PLANKKPRISHF 344
+S G+ +PA+ P RG A PP K P PL K RIS
Sbjct: 81 RSAGTSSRNPASRPPASGRGERA-PPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRIS-- 137
Query: 345 TQRAQPAVNGKLGVPNGREALL---------PTPGPPA-----STDTLSSSTHLP---PR 387
+ GK R AL PTPG P+ + + LP P
Sbjct: 138 --AEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPS 195
Query: 388 LEP-PRAHDPLADVSNDLGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRS 446
P P P VS+ HS + P+ L P + + P SP+RS
Sbjct: 196 ARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARS 255
Query: 447 KPKKKS--------KKHKDKERAAEDKPRAQLP--DCAPATHATPGAPADTPGLNGTCSV 496
P + + K K A P+ P D APA +P TP +
Sbjct: 256 GPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQS 315
Query: 497 SSVPT 501
+ PT
Sbjct: 316 QAPPT 320
Score = 34.3 bits (77), Expect = 0.35
Identities = 58/228 (25%), Positives = 80/228 (35%), Gaps = 33/228 (14%)
Query: 305 PAASSPPGERGRSA------SPPQKRLQP---PDFIDPLANKKPRISHFTQR-----AQP 350
PA S P +G A +PP+K P P PLA P + +Q A P
Sbjct: 266 PAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATP 325
Query: 351 ---AVNGKLGVPNGREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHS 407
++ +L P P+P P S TL S PP P +A L + HS
Sbjct: 326 HSSSLTCQLATP--LPLAPPSPSAPPSLQTLPS----PPATPPSQATTSLGSPTLQATHS 379
Query: 408 GRDCEH-GEAAAPAPTV--RLGLPLL-----TDCAQPSRPHGSPSRSKPKKKSKKHKDKE 459
A P P L LP L + P P +PS P +
Sbjct: 380 FLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAP 439
Query: 460 RAAEDKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSSVPTSTSETP 507
+ P Q P PA + P +P+ TP S+++ P +P
Sbjct: 440 FSPPPSPPVQAPFSPPA--SPPVSPSATPPSQAPPSLAAPPLQVPPSP 485
Score = 33.5 bits (75), Expect = 0.60
Identities = 67/283 (23%), Positives = 90/283 (31%), Gaps = 77/283 (27%)
Query: 295 PQSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISH----------- 343
P +T PA + PP + +PP PP + PLA P+ +
Sbjct: 388 PLATPPPQAPPALALPPLQ-----APPSPPASPP--LSPLATPSPQAPNALAVHLLQAPF 440
Query: 344 -----------FTQRAQPAVNGKLGVPNGREALLPTP------GPPASTDTLSSSTHLPP 386
F+ A P V+ P+ L P PPAS S+T PP
Sbjct: 441 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP-PP 499
Query: 387 RLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHG----- 441
+ PP A PL + A P P L A PS P
Sbjct: 500 QAPPPLAAPPL-----------------QLAKPPPQAPPALATPPLQALPSPPASFPGQA 542
Query: 442 --SPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHA--------TPGAPADTPGLN 491
SPS S P + P Q+P PA+ TPG G
Sbjct: 543 PFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPR 602
Query: 492 GTCSV--------SSVPTSTSETPDYL-LKYAAISSSEQRQSY 525
T ++ S P+ST PD +A S+ E+ + Y
Sbjct: 603 LTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGY 645
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 39.7 bits (91), Expect = 0.008
Identities = 55/214 (25%), Positives = 70/214 (32%), Gaps = 33/214 (15%)
Query: 310 PPGERGRSASPPQKRLQPPDFIDP--LANKKPRISHFTQRAQPAVNGKLG-VPNGREALL 366
PPG G PP ++ PP P ++ P F QP LG +P G +
Sbjct: 243 PPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFP--GQPFGQPPLGPLPPGPPPPV 300
Query: 367 PTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPAPTVRLG 426
P GPP PP PPR PL AP P
Sbjct: 301 PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPL--------------TLAPPP----H 342
Query: 427 LPLLTDCAQPSRPHGSPSRSKPKKKS-KKHKDKERAAEDKPRAQLPDCAPATHATPGAPA 485
LP A P PH +P+ P S D P + P + PG
Sbjct: 343 LPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREM 402
Query: 486 DTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSS 519
DT + P S +E + + + AISSS
Sbjct: 403 DT---------ARTPLSEAEFEEIMNRNRAISSS 427
Score = 30.8 bits (68), Expect = 3.9
Identities = 43/202 (21%), Positives = 62/202 (30%), Gaps = 47/202 (23%)
Query: 305 PAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPNGREA 364
P PPG G PP PP P P H P G+P
Sbjct: 322 PFPPRPPGPLG----PPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNS-GMPTSDSR 376
Query: 365 LLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADV-------------SNDLGHSGRDC 411
P P + PP E A PL++ S+ + + D
Sbjct: 377 GPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDA 436
Query: 412 EHGEAAAPAPTVRLGLPL------------------LTDCAQ--PSRPHGSPSR------ 445
G+ + T+ + L L DC S+ +GS SR
Sbjct: 437 SAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRERSRE 496
Query: 446 ---SKPKKKSKKHKDKERAAED 464
S+ ++KS++HK + R D
Sbjct: 497 RDHSRSREKSRRHKSRSRDRHD 518
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 39.7 bits (91), Expect = 0.008
Identities = 56/227 (24%), Positives = 78/227 (34%), Gaps = 31/227 (13%)
Query: 297 STGSLLGDPAASSP-----PGERGRSASPPQKRLQ---PPDFIDPLANKKPRISHFTQRA 348
S+ + L PA S P P + P K LQ PP P + P +
Sbjct: 235 SSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALG------ 288
Query: 349 QPAVNGKLGVPNGREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSG 408
P + L P+ + P+P P S TL S PP P +A L + HS
Sbjct: 289 -PLSSSPLATPS--PSAPPSPSAPPSLQTLPS----PPATPPSQATTSLGSPTLQATHSF 341
Query: 409 RDCEH-GEAAAPAPTV--RLGLPLL-----TDCAQPSRPHGSPSRSKPKKKSKKHKDKER 460
A P P L LP L + P P +PS P +
Sbjct: 342 LPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPF 401
Query: 461 AAEDKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSSVPTSTSETP 507
+ P Q P PA + P +P+ TP S+++ P +P
Sbjct: 402 SPPPSPPVQAPFSPPA--SPPVSPSATPPSQAPPSLAAPPLQVPPSP 446
Score = 33.5 bits (75), Expect = 0.60
Identities = 67/283 (23%), Positives = 90/283 (31%), Gaps = 77/283 (27%)
Query: 295 PQSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISH----------- 343
P +T PA + PP + +PP PP + PLA P+ +
Sbjct: 349 PLATPPPQAPPALALPPLQ-----APPSPPASPP--LSPLATPSPQAPNALAVHLLQAPF 401
Query: 344 -----------FTQRAQPAVNGKLGVPNGREALLPTP------GPPASTDTLSSSTHLPP 386
F+ A P V+ P+ L P PPAS S+T PP
Sbjct: 402 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP-PP 460
Query: 387 RLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHG----- 441
+ PP A PL + A P P L A PS P
Sbjct: 461 QAPPPLAAPPL-----------------QLAKPPPQAPPALATPPLQALPSPPASFPGQA 503
Query: 442 --SPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHA--------TPGAPADTPGLN 491
SPS S P + P Q+P PA+ TPG G
Sbjct: 504 PFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPR 563
Query: 492 GTCSV--------SSVPTSTSETPDYL-LKYAAISSSEQRQSY 525
T ++ S P+ST PD +A S+ E+ + Y
Sbjct: 564 LTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGY 606
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 39.7 bits (91), Expect = 0.008
Identities = 51/193 (26%), Positives = 62/193 (32%), Gaps = 27/193 (13%)
Query: 303 GDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPNGR 362
GDP PPG+ GR P L + +K F R +G G P
Sbjct: 133 GDPG---PPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGDQGQDGAAGPPG-- 187
Query: 363 EALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPAPT 422
PGPP + + PR A P + G G+D E G P P
Sbjct: 188 -----PPGPPGARGPPGDTGKDGPR----GAQGP----AGPKGEPGQDGEMGPKGPPGPK 234
Query: 423 VRLGLP-LLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHATP 481
G+P D PS+P P K + R A P P T
Sbjct: 235 GEPGVPGKKGDDGTPSQP------GPPGPKGEPGSMGPRGENGVDGAPGPKGEPGHRGTD 288
Query: 482 GA--PADTPGLNG 492
GA P PGL G
Sbjct: 289 GAAGPRGAPGLKG 301
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 39.3 bits (90), Expect = 0.011
Identities = 55/228 (24%), Positives = 81/228 (35%), Gaps = 36/228 (15%)
Query: 297 STGSLLGDPAASSPPGERGRSASPPQKRLQP-------PDFIDPLANKKPRISHFTQRAQ 349
S LLG+PA S P GE S P + L P P + P P T A
Sbjct: 890 SLSPLLGEPALSEP-GEPPLSPLPEELPLSPSGEPSLSPQLMPPDPLPPPLSPIITAAAP 948
Query: 350 PAVN--GKLGVPNGREA-----------LLPTPGPPASTDTLSSSTHLPPRLEPPRAHDP 396
PA++ G+L P G + +L TP P + +PP + PP P
Sbjct: 949 PALSPLGELEYPFGAKGDSDPESPLAAPILETPISPPPEANCTDPEPVPPMILPPSPGSP 1008
Query: 397 LADVSNDL-----GHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKK 451
+ S L +H +P + C+ P+ P PS P K
Sbjct: 1009 VGPASPILMEPLPPQCSPLLQHSLVPQNSPP--------SQCSPPALPLSVPSPLSPIGK 1060
Query: 452 SKKHKDKERAAE-DKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSS 498
D+ E + + P+C PA + +P +P + +C S
Sbjct: 1061 VVGVSDEAELHEMETEKVSEPEC-PALEPSATSPLPSPMGDLSCPAPS 1107
Score = 38.1 bits (87), Expect = 0.024
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 305 PAASSPPGERGRSASPPQKRLQPP---DFIDPLANKKPRISHFTQRAQPAVNGKLGVPNG 361
P PP E G+ +P + L PP + PL +P +S + +P ++ P
Sbjct: 862 PRPEKPPEEPGQCPAPEELPLFPPPGEPSLSPLLG-EPALS---EPGEPPLS-----PLP 912
Query: 362 REALLPTPGPPASTDTLSSSTHLPPRLEP------PRAHDPLADVSNDLGHSGRDCEHGE 415
E L G P+ + L LPP L P P A PL ++ G G
Sbjct: 913 EELPLSPSGEPSLSPQLMPPDPLPPPLSPIITAAAPPALSPLGELEYPFGAKGDSDPESP 972
Query: 416 AAAPAPTVRLGLPLLTDCAQP 436
AAP + P +C P
Sbjct: 973 LAAPILETPISPPPEANCTDP 993
Score = 35.8 bits (81), Expect = 0.12
Identities = 45/167 (26%), Positives = 56/167 (33%), Gaps = 35/167 (20%)
Query: 288 LVRKLCQPQSTGSLLGDPAAS--SPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFT 345
+V +L P L P S SPP E R + PP+ P D A+ P
Sbjct: 658 VVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPE----- 712
Query: 346 QRAQPAVNGKLGVPNGREALLPTPGPPASTDTLSSSTHLPPRLE----PPRAHDPLADVS 401
+ + +P LLP P P S HL PR E PR +P
Sbjct: 713 -------DSLMSLPLEESPLLPLPEEPQLCPR-SEGPHLSPRPEEPHLSPRPEEPHLSPQ 764
Query: 402 NDLGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKP 448
+ H +P P P L CA P PH SP P
Sbjct: 765 AEEPH----------LSPQPEE----PCL--CAVPEEPHLSPQAEGP 795
Score = 32.3 bits (72), Expect = 1.3
Identities = 56/203 (27%), Positives = 73/203 (35%), Gaps = 23/203 (11%)
Query: 301 LLGDPAAS--SPPGERGRSASPPQ-KRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLG 357
LL P S SPP E ++ PP+ RL PP P A+ P H ++P L
Sbjct: 440 LLPPPEESPLSPPPEESPTSPPPEASRLSPPPEELP-ASPLPEALHL---SRPLEESPLS 495
Query: 358 VPNGREALLP----TPGPPASTDTLSSSTHLPPR------LEPPRAHDPLADVSNDLGHS 407
P L P +P P LS PP L PP PL+ + S
Sbjct: 496 PPPEESPLSPPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEASPLSPPFEESPLS 555
Query: 408 GRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPR 467
E + P RL P P P SP S P + S+ E + P
Sbjct: 556 PPP-EELPTSPPPEASRLSPPPEESPMSPP-PEESP-MSPPPEASRLFPPFEESPLSPPP 612
Query: 468 AQLPDCAP--ATHATPGAPADTP 488
+ P P A+ +P P D+P
Sbjct: 613 EESPLSPPPEASRLSP-PPEDSP 634
Score = 32.3 bits (72), Expect = 1.3
Identities = 38/173 (21%), Positives = 57/173 (32%), Gaps = 22/173 (12%)
Query: 308 SSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPNGREALLP 367
S PP E S P RL PP P++ + + P +L P L P
Sbjct: 555 SPPPEELPTSPPPEASRLSPPPEESPMSPPPEE----SPMSPPPEASRLFPPFEESPLSP 610
Query: 368 TPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPAPTVRLG- 426
P + +S PP + P + P E + P RL
Sbjct: 611 PPEESPLSPPPEASRLSPPPEDSPMSPPP---------------EESPMSPPPEVSRLSP 655
Query: 427 LPLLTDCAQP--SRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPAT 477
LP+++ + P P P P + ED P + P+ +PA+
Sbjct: 656 LPVVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPAS 708
>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 1910
Score = 39.3 bits (90), Expect = 0.011
Identities = 57/213 (26%), Positives = 79/213 (37%), Gaps = 30/213 (14%)
Query: 295 PQSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNG 354
P S S P+ +PP +A P ++ L P DPL PR + F Q +
Sbjct: 1213 PHSVNSSPESPSCPAPP--TSSTAQPRRECLTP--IRDPLRTP-PRAAAFMGTPQNQTHQ 1267
Query: 355 KLGVPNGREALLP----------TPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVS--N 402
+ V A P TP P ++ SS P +L PL DVS +
Sbjct: 1268 QPHVLRAARAEEPAQKLKDKAIKTPKRPGNSTVTSSPPVTPKKLFT----SPLCDVSKKS 1323
Query: 403 DLGHSGRDCEH-GEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSK-----PKKKSKKHK 456
S +C GE P + + C PS P R+ P SK K
Sbjct: 1324 PFRKSKIECPSPGELDQKEPQMSPSVAASLSCPVPSTPPELSQRATLDTVPPPPPSKVGK 1383
Query: 457 DKERAAEDKPRAQLPDCAPATHATPG-APADTP 488
+ ++ PR + +C P ATPG AD+P
Sbjct: 1384 RCRKTSD--PRRSIVECQPDASATPGVGTADSP 1414
>gi|169207799 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 38.9 bits (89), Expect = 0.014
Identities = 36/130 (27%), Positives = 47/130 (36%), Gaps = 32/130 (24%)
Query: 362 REALLPTPGPPASTDTLSSSTHLPPRL-------EPPRAHDPLADVSNDLGHSGRDCEHG 414
R L TP P + ++ LPPR+ +PPR D H C
Sbjct: 25 RPRFLATPRVPGTP-----TSQLPPRIPGPPTTRQPPRVPD----------HLHLSCPRA 69
Query: 415 EAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRA---QLP 471
P P+ L P+ P+RP + S P+ +R D PRA QLP
Sbjct: 70 SPDRPRPSCPLASPIADVPPSPARPRTAHVPSAPRL-------PDRPLPDSPRASLWQLP 122
Query: 472 DCAPATHATP 481
C P A P
Sbjct: 123 RCFPPRRARP 132
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 38.9 bits (89), Expect = 0.014
Identities = 57/212 (26%), Positives = 75/212 (35%), Gaps = 22/212 (10%)
Query: 299 GSLLGDPAASSPPGERGRSASPPQKRL---QPPDFIDPLANKKPRISHFTQRAQPAVNGK 355
GS+ P +SS P P R +PP P+ N+ P I P N K
Sbjct: 233 GSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNR-PSIHREAVPPPPPQNNK 291
Query: 356 LGVPN----GREALLPTPGPPASTD------TLSSSTHLPPRLEPPRAHDPLADVSNDLG 405
VP+ + P P PP S SS PRL P+ + L+ + L
Sbjct: 292 PPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRL--PQRNLSLSSSTPPLP 349
Query: 406 HSGRD--CEHGEAAAPAPTVRLGLPLLTDCAQPSRP---HGSPSRSKPKKKSKKHKDKER 460
GR + P P VR P + P P +GS SR+ P +
Sbjct: 350 SPGRSGPLPPPPSERPPPPVR-DPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVD 408
Query: 461 AAEDKPRAQLPDCAPATHATPGAPADTPGLNG 492
+ PR LP P+ A P P T NG
Sbjct: 409 SPRSGPRPPLPPDRPSAGAPPPPPPSTSIRNG 440
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 38.9 bits (89), Expect = 0.014
Identities = 57/212 (26%), Positives = 75/212 (35%), Gaps = 22/212 (10%)
Query: 299 GSLLGDPAASSPPGERGRSASPPQKRL---QPPDFIDPLANKKPRISHFTQRAQPAVNGK 355
GS+ P +SS P P R +PP P+ N+ P I P N K
Sbjct: 233 GSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNR-PSIHREAVPPPPPQNNK 291
Query: 356 LGVPN----GREALLPTPGPPASTD------TLSSSTHLPPRLEPPRAHDPLADVSNDLG 405
VP+ + P P PP S SS PRL P+ + L+ + L
Sbjct: 292 PPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRL--PQRNLSLSSSTPPLP 349
Query: 406 HSGRD--CEHGEAAAPAPTVRLGLPLLTDCAQPSRP---HGSPSRSKPKKKSKKHKDKER 460
GR + P P VR P + P P +GS SR+ P +
Sbjct: 350 SPGRSGPLPPPPSERPPPPVR-DPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVD 408
Query: 461 AAEDKPRAQLPDCAPATHATPGAPADTPGLNG 492
+ PR LP P+ A P P T NG
Sbjct: 409 SPRSGPRPPLPPDRPSAGAPPPPPPSTSIRNG 440
>gi|45505151 nuclear factor I/C isoform 2 [Homo sapiens]
Length = 499
Score = 38.9 bits (89), Expect = 0.014
Identities = 47/170 (27%), Positives = 63/170 (37%), Gaps = 30/170 (17%)
Query: 313 ERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGV---PNGREAL-LPT 368
E G S+ + + F P PR+S FTQ +P + G+ P+ AL PT
Sbjct: 309 EGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPT 368
Query: 369 PG---PPASTDTLSSSTHLPPRLEP--------PRAHDPLADVSNDLGHSGR-----DCE 412
AST ++ PP L P A DP + L SG+ C
Sbjct: 369 TSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQPGPLNGSGQLKMPSHCL 428
Query: 413 HGEAAAPAP--TVRLGLPLLTDCA--------QPSRPHGSPSRSKPKKKS 452
+ AP P RL LP T A P+ P SP + P +S
Sbjct: 429 SAQMLAPPPPGLPRLALPPATKPATTSEGGATSPTSPSYSPPDTSPANRS 478
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 38.9 bits (89), Expect = 0.014
Identities = 44/154 (28%), Positives = 58/154 (37%), Gaps = 33/154 (21%)
Query: 303 GDPAASSPPGERGRSAS--PPQKR--LQPPDFIDPLANKKPR-ISHFTQRAQPAVNGKLG 357
G P A P GERG S + PP R + PP P + P +S ++ + + G G
Sbjct: 1592 GGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAG 1651
Query: 358 VPN--GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGE 415
P GR PGPP + PP D G +G+D G
Sbjct: 1652 EPGLPGRTGTPGLPGPPGP-------------MGPP----------GDRGFTGKDGAMGP 1688
Query: 416 AAAPAPTVRLGLPLLT-DCAQPSRP--HGSPSRS 446
P P G P +T +P +P HG P S
Sbjct: 1689 RGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPS 1722
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 38.9 bits (89), Expect = 0.014
Identities = 44/154 (28%), Positives = 58/154 (37%), Gaps = 33/154 (21%)
Query: 303 GDPAASSPPGERGRSAS--PPQKR--LQPPDFIDPLANKKPR-ISHFTQRAQPAVNGKLG 357
G P A P GERG S + PP R + PP P + P +S ++ + + G G
Sbjct: 2756 GGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAG 2815
Query: 358 VPN--GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGE 415
P GR PGPP + PP D G +G+D G
Sbjct: 2816 EPGLPGRTGTPGLPGPPGP-------------MGPP----------GDRGFTGKDGAMGP 2852
Query: 416 AAAPAPTVRLGLPLLT-DCAQPSRP--HGSPSRS 446
P P G P +T +P +P HG P S
Sbjct: 2853 RGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPS 2886
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 38.9 bits (89), Expect = 0.014
Identities = 47/195 (24%), Positives = 64/195 (32%), Gaps = 33/195 (16%)
Query: 306 AASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPNGREAL 365
A ++PP + PP PP PL + P + P G L V
Sbjct: 162 ARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVPC 221
Query: 366 LPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPAPTVRL 425
P P PP PP PP P A V +D + + A P +
Sbjct: 222 APPPPPPP-----------PPPTPPPL---PPASVLSD-----KAVKPQLAPLHLPPIPP 262
Query: 426 GLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHATPGAPA 485
LPLL C P +++P ++ ++ P A P P +P A
Sbjct: 263 PLPLLPPCGYPG------LKAEPASPAQDAQE--------PPAPPPPLPPYASCSPRASL 308
Query: 486 DTPGLNGTCSVSSVP 500
P L G S S P
Sbjct: 309 PAPPLPGVNSSSETP 323
Score = 31.2 bits (69), Expect = 3.0
Identities = 38/140 (27%), Positives = 49/140 (35%), Gaps = 31/140 (22%)
Query: 311 PGERGRSASPPQKRLQPP---DFIDPLANKKPRISHFTQRAQPAVNGKLGVPN------- 360
PG + ASP Q +PP + P A+ PR S P VN P
Sbjct: 273 PGLKAEPASPAQDAQEPPAPPPPLPPYASCSPRAS-LPAPPLPGVNSSSETPPPLPPKSP 331
Query: 361 ---------GREALLPTPGPPASTDTLSSSTHLPP-----RLEPPRAHDPLADVSNDLGH 406
G +AL P PP S L H P +L PP A P + +L
Sbjct: 332 SFQAPPQKAGAQALPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPPPA-PPARSPTTELSS 390
Query: 407 SGRDCEHGEAAAPAPTVRLG 426
+ +A A PT + G
Sbjct: 391 KSQ-----QATAWTPTQQPG 405
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 38.5 bits (88), Expect = 0.019
Identities = 73/341 (21%), Positives = 124/341 (36%), Gaps = 40/341 (11%)
Query: 247 QQVANMSAKDGTCTL----QDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQPQSTGSLL 302
QQ+ + G C +DC + D +D + G ++ ++ +R+ CQ ++ S
Sbjct: 160 QQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFG-GPNKIRQKCRLRQ-CQLRARESYK 217
Query: 303 GDPAASSP--PGE---RGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLG 357
P++ SP P E R R P Q++ QP + + + ++ T + P
Sbjct: 218 YFPSSLSPVTPSESLPRPRRPLPTQQQPQPSQKLGRIREDEGAVASSTVKEPPEATA--- 274
Query: 358 VPNGREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGR-DCEHGEA 416
TP P + D LP L+P D A +D G D E
Sbjct: 275 ----------TPEPLSDED-------LP--LDPDLYQDFCAGAFDDHGLPWMSDTEESPF 315
Query: 417 AAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKER---AAEDKPRAQLPDC 473
PA R + R K ++ +KHKDK + A+ K A LP C
Sbjct: 316 LDPALRKRAVKVKHVKRREKKSEKKKEERYKRHRQKQKHKDKWKHPERADAKDPASLPQC 375
Query: 474 APATHATPGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAEY 533
P P+ + + C + E ++ S + K
Sbjct: 376 LGPGCVRPAQPS-SKYCSDDCGMKLAANRIYEILPQRIQQWQQSPCIAEEHGKKLLERIR 434
Query: 534 SEYRDLHARIERITRRFTQLDAQLRQLSQGS--EEYETTRG 572
E + R++ + RRF +L+A + + Q + E+ E+ G
Sbjct: 435 REQQSARTRLQEMERRFHELEAIILRAKQQAVREDEESNEG 475
>gi|147905592 coiled-coil domain containing 102B [Homo sapiens]
Length = 513
Score = 38.5 bits (88), Expect = 0.019
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 501 TSTSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDA----- 555
++ S++PD+ K + I E+ Q N +A Y R A I +T ++D
Sbjct: 401 SANSQSPDF--KMSQIDLQEKNQELLNLQHAYYKLNRQYQANIAELTHANNRVDQNEAEV 458
Query: 556 -----QLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIK 606
++ +L QG + E L + RK+++ + +EK R E L ++L H++
Sbjct: 459 KKLRLRVEELKQGLNQKEDELDDSLNQIRKLQR---SLDEEKERNENLETELRHLQ 511
>gi|148233522 coiled-coil domain containing 102B [Homo sapiens]
Length = 513
Score = 38.5 bits (88), Expect = 0.019
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 501 TSTSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDA----- 555
++ S++PD+ K + I E+ Q N +A Y R A I +T ++D
Sbjct: 401 SANSQSPDF--KMSQIDLQEKNQELLNLQHAYYKLNRQYQANIAELTHANNRVDQNEAEV 458
Query: 556 -----QLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIK 606
++ +L QG + E L + RK+++ + +EK R E L ++L H++
Sbjct: 459 KKLRLRVEELKQGLNQKEDELDDSLNQIRKLQR---SLDEEKERNENLETELRHLQ 511
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 38.1 bits (87), Expect = 0.024
Identities = 54/204 (26%), Positives = 78/204 (38%), Gaps = 31/204 (15%)
Query: 326 QPPDFID-----PLANKKPRISHFTQRAQPAVNGKLGVPNGREALLPTPGPPASTDTLSS 380
+P D ID P A + + TQ A PA GK ++A P P P + +TL +
Sbjct: 103 EPEDVIDLVQPAPGAGEAEGLPEGTQAAGPAPAGK--EHRKQDAETPPPPDPPAPETLLA 160
Query: 381 STHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPH 440
LP +PPR +L EH PT PL+ R
Sbjct: 161 PPPLPSTPDPPR---------RELRAPSPPVEHPRLLRSVPT-----PLVMAQKISERMA 206
Query: 441 GSP--SRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSS 498
G+ S + P ++ + + + AA PR+ P P+ A P AP + T +
Sbjct: 207 GNEALSPTSPFREGRPGEWRTPAARG-PRSGDPGPGPSHPAQPKAPRFPSNIIVTNGAAR 265
Query: 499 VPTSTSETPDYLLKYAAISSSEQR 522
P T L AA+S E+R
Sbjct: 266 EPRRT-------LSRAAVSVQERR 282
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 38.1 bits (87), Expect = 0.024
Identities = 50/179 (27%), Positives = 62/179 (34%), Gaps = 36/179 (20%)
Query: 279 GDQQLLKRVLVRKLCQPQSTGSLLGDPAASSPPGERGRSAS----PPQKRLQPPDFIDPL 334
G QLL KL +P + L G+ P GERG + PP R PP I L
Sbjct: 746 GSTQLLNEP---KLSRPTAAIGLKGEKGDRGPKGERGMDGASIVGPPGPR-GPPGHIKVL 801
Query: 335 ANKKPRISHFTQRAQ--PAVNGKLGVPNGREALLPTPGPPASTDTLSSSTHLPPRLEPPR 392
+N I+H P + G G P+G L PGP T LP
Sbjct: 802 SNSLINITHGFMNFSDIPELVGPPG-PDGLPGLPGFPGPRGP----KGDTGLP------- 849
Query: 393 AHDPLADVSNDLGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRP--HGSPSRSKPK 449
G G E GE P + +PL + P HG+P PK
Sbjct: 850 ------------GFPGLKGEQGEKGEPGAILTEDIPLERLMGKKGEPGMHGAPGPMGPK 896
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 38.1 bits (87), Expect = 0.024
Identities = 52/238 (21%), Positives = 81/238 (34%), Gaps = 34/238 (14%)
Query: 292 LCQPQSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPR--ISHFTQRAQ 349
L ST SL+ +SP G R++ L D ++ PR I+ RA
Sbjct: 295 LSMTPSTASLMRMLPRASPTGMLSRTS------LTKMDSTASISRTPPRASITRTPSRAS 348
Query: 350 PAVNGKLGVPNGREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGR 409
P P G + G P++ S+ P PPRA P S +
Sbjct: 349 PTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRA-SPTGTPST----ASL 403
Query: 410 DCEHGEAAAPAPTVRLGLPLLTDCAQPSR------PHGSPSRSK----PKKKSKKHKDKE 459
+ A+ R + + A P+R P G+P R+ P + S
Sbjct: 404 TRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTGTQST 463
Query: 460 RAAEDKPRAQLPDCAPATHATPGAP-----------ADTPGLNGTCSVSSVPTSTSET 506
+ P P +P+T + G+P A + T S++ P+ S T
Sbjct: 464 ASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRASPT 521
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 38.1 bits (87), Expect = 0.024
Identities = 62/232 (26%), Positives = 78/232 (33%), Gaps = 35/232 (15%)
Query: 303 GDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPNGR 362
G PAA SPP RG A P P A P A+PA VP
Sbjct: 16 GAPAAPSPP-PRGSRAGPVVVVAPGPPVTT--ATSAPVTLVAPGEARPA-----WVPGSA 67
Query: 363 EALLPTPGP-----PASTD------TLSSSTHLPPRLEP--PRAHDPLADVSNDLGHS-- 407
E P P P PA T TL +S P P P + +P A + +
Sbjct: 68 ETSAPAPAPAPAPAPAVTGSTVVVLTLEASPEAPKPQLPSGPESPEPAAVAGVETSRALA 127
Query: 408 -GRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKD-----KERA 461
G D E A P+P G P T PSR +KP K R+
Sbjct: 128 AGADSPKTEEARPSPAPGPGTPTGTPTRTPSRTAPGALTAKPPLAPKPGTTVASGVTARS 187
Query: 462 AEDKPRAQLPDCAPATHATPGAPADTP-----GLNGTCSVSSVPTSTSETPD 508
A + A AT A+ G + P G +GTC + + P+
Sbjct: 188 ASGQVTGG-HGAAAATSASAGQAPEDPSGPGTGPSGTCEAPVAVVTVTPAPE 238
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,200,827
Number of Sequences: 37866
Number of extensions: 1484479
Number of successful extensions: 8210
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 445
Number of HSP's that attempted gapping in prelim test: 7086
Number of HSP's gapped (non-prelim): 1520
length of query: 621
length of database: 18,247,518
effective HSP length: 108
effective length of query: 513
effective length of database: 14,157,990
effective search space: 7263048870
effective search space used: 7263048870
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.