Guide to the Human Genome
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Name: NFIC Sequence: fasta or formatted (499aa) NCBI GI: 45505151
Description:

nuclear factor I/C isoform 2

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [428aa] nuclear factor I/C isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         32           2
 C cysteine            1.4          7           1
 D aspartate           5.6         28           1
 E glutamate           5.0         25           2
 F phenylalanine       3.4         17           1
 G glycine             6.8         34           2
 H histidine           3.2         16           2
 I isoleucine          3.0         15           1
 K lysine              5.8         29           2
 L leucine             8.8         44           2
 M methionine          2.0         10           1
 N asparagine          1.8          9           1
 P proline            10.4         52           4
 Q glutamine           4.2         21           2
 R arginine            5.8         29           2
 S serine             11.2         56           3
 T threonine           6.4         32           2
 V valine              5.2         26           2
 W tryptophan          1.0          5           1
 Y tyrosine            2.4         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear factor I/C isoform 2 
NFIC                  0.821   nuclear factor I/C isoform 1 
NFIA                  0.553   nuclear factor I/A isoform 3 
NFIA                  0.551   nuclear factor I/A isoform 4 
NFIA                  0.551   nuclear factor I/A isoform 1 
NFIA                  0.514   nuclear factor I/A isoform 2 
NFIB                  0.478   nuclear factor I/B 
NFIX                  0.436   nuclear factor I/X (CCAAT-binding transcription fact...
POLR2A                0.040   DNA-directed RNA polymerase II A 
MUC2                  0.026   mucin 2 precursor 
INF2                  0.025   inverted formin 2 isoform 2 
INF2                  0.025   inverted formin 2 isoform 1 
RERE                  0.023   atrophin-1 like protein isoform b 
RERE                  0.023   atrophin-1 like protein isoform a 
RERE                  0.023   atrophin-1 like protein isoform a 
KLHL29                0.022   PREDICTED: kelch-like 29 (Drosophila) 
KLHL29                0.022   PREDICTED: kelch-like 29 (Drosophila) 
KLHL29                0.022   PREDICTED: kelch repeat and BTB (POZ) domain contai...
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
MUC7                  0.019   mucin 7, secreted precursor 
MUC7                  0.019   mucin 7, secreted precursor 
MUC7                  0.019   mucin 7, secreted precursor 
NACA                  0.019   nascent polypeptide-associated complex alpha subuni...
CASKIN1               0.019   CASK interacting protein 1 
PRG4                  0.019   proteoglycan 4 isoform D 
PRG4                  0.019   proteoglycan 4 isoform C 
PRG4                  0.019   proteoglycan 4 isoform B 
PRG4                  0.019   proteoglycan 4 isoform A 
WIPF1                 0.018   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.018   WAS/WASL interacting protein family, member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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