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Search of human proteins with 57232748
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57232748 HMG2 like isoform 2 [Homo sapiens]
(112 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57232750 HMG2 like isoform 1 [Homo sapiens] 235 5e-63
gi|57232748 HMG2 like isoform 2 [Homo sapiens] 235 5e-63
gi|194688135 high-mobility group box 2 [Homo sapiens] 88 2e-18
gi|194688133 high-mobility group box 2 [Homo sapiens] 88 2e-18
gi|11321591 high-mobility group box 2 [Homo sapiens] 88 2e-18
gi|4504425 high-mobility group box 1 [Homo sapiens] 77 2e-15
gi|71143137 high-mobility group box 3 [Homo sapiens] 77 4e-15
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 75 1e-14
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 75 1e-14
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 75 1e-14
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 74 2e-14
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 74 2e-14
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 74 3e-14
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 70 4e-13
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 70 4e-13
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 70 4e-13
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 69 6e-13
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 69 1e-12
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 69 1e-12
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 69 1e-12
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 69 1e-12
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens] 66 7e-12
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 65 1e-11
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 65 1e-11
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 65 1e-11
gi|226246533 TOX high mobility group box family member 3 isoform... 65 2e-11
gi|226054295 TOX high mobility group box family member 3 isoform... 65 2e-11
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 65 2e-11
gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens] 62 8e-11
gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens] 62 8e-11
>gi|57232750 HMG2 like isoform 1 [Homo sapiens]
Length = 186
Score = 235 bits (600), Expect = 5e-63
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTA 60
MMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTA
Sbjct: 75 MMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTA 134
Query: 61 TDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRGKRVRQS 112
TDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRGKRVRQS
Sbjct: 135 TDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRGKRVRQS 186
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 18 EPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQRVALL 75
+P+ SS++ F ++ + K + PN V + ++ + W + + EK YE L
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 76 RAKYFEELELYRKQCNARKK 95
+A+Y EE+ Y + R+K
Sbjct: 68 KARYQEEMMNYVGKRKKRRK 87
>gi|57232748 HMG2 like isoform 2 [Homo sapiens]
Length = 112
Score = 235 bits (600), Expect = 5e-63
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTA 60
MMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTA
Sbjct: 1 MMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTA 60
Query: 61 TDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRGKRVRQS 112
TDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRGKRVRQS
Sbjct: 61 TDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRGKRVRQS 112
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 87.8 bits (216), Expect = 2e-18
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 1 MMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWS 58
M NYV + KK +K+DP P+RPPS+F LFC +H ++K E+P S+ AK G+MWS
Sbjct: 75 MKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS 134
Query: 59 TATDLEKHPYEQRVALLRAKYFEELELYR 87
+ +K PYEQ+ A L+ KY +++ YR
Sbjct: 135 EQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP +PR SS+ F Q + K+++P+ SV + +K + W T + EK +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 71 RVALLRAKYFEELELY 86
+A+Y E++ Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 87.8 bits (216), Expect = 2e-18
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 1 MMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWS 58
M NYV + KK +K+DP P+RPPS+F LFC +H ++K E+P S+ AK G+MWS
Sbjct: 75 MKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS 134
Query: 59 TATDLEKHPYEQRVALLRAKYFEELELYR 87
+ +K PYEQ+ A L+ KY +++ YR
Sbjct: 135 EQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP +PR SS+ F Q + K+++P+ SV + +K + W T + EK +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 71 RVALLRAKYFEELELY 86
+A+Y E++ Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 87.8 bits (216), Expect = 2e-18
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 1 MMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWS 58
M NYV + KK +K+DP P+RPPS+F LFC +H ++K E+P S+ AK G+MWS
Sbjct: 75 MKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS 134
Query: 59 TATDLEKHPYEQRVALLRAKYFEELELYR 87
+ +K PYEQ+ A L+ KY +++ YR
Sbjct: 135 EQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP +PR SS+ F Q + K+++P+ SV + +K + W T + EK +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 71 RVALLRAKYFEELELY 86
+A+Y E++ Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 77.4 bits (189), Expect = 2e-15
Identities = 32/78 (41%), Positives = 52/78 (66%)
Query: 10 KRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYE 69
K++ +DP P+RPPS+F LFC ++ ++K E+P S+ VAK G+MW+ +K PYE
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 70 QRVALLRAKYFEELELYR 87
++ A L+ KY +++ YR
Sbjct: 146 KKAAKLKEKYEKDIAAYR 163
Score = 41.2 bits (95), Expect = 2e-04
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP++PR SS+ F Q + K+++P+ SV + +K + W T + EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 71 RVALLRAKYFEELELY 86
+A+Y E++ Y
Sbjct: 63 MAKADKARYEREMKTY 78
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 76.6 bits (187), Expect = 4e-15
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 1 MMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTA 60
M +Y + ++K+DP P+RPPS F LFC + ++K NP S+ VAK G+MW+
Sbjct: 75 MKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNL 134
Query: 61 TDLEKHPYEQRVALLRAKYFEELELYRKQ 89
D EK PY + A L+ KY +++ Y+ +
Sbjct: 135 NDSEKQPYITKAAKLKEKYEKDVADYKSK 163
Score = 39.7 bits (91), Expect = 5e-04
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP++P+ S++ F Q + K++NP V + +K + W T + EK +++
Sbjct: 3 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDE 62
Query: 71 RVALLRAKYFEELELYRKQCNARKKYRMSARNR 103
+ +Y E++ Y +KK +A R
Sbjct: 63 MAKADKVRYDREMKDYGPAKGGKKKKDPNAPKR 95
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 75.1 bits (183), Expect = 1e-14
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 2 MNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTAT 61
M G K +K+DP P+RPPS F LFC + ++K NP S+ VAK G+MW+
Sbjct: 75 MKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLN 134
Query: 62 DLEKHPYEQRVALLRAKYFEEL 83
D EK PY + A L+ KY +++
Sbjct: 135 DSEKQPYVTKAAKLKEKYEKDV 156
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP++P+ S++ Q + K++NP V + +K W T + EK + +
Sbjct: 3 KGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKFGE 62
Query: 71 RVALLRAKYFEELELYRKQCNARKK 95
Y E++ Y +KK
Sbjct: 63 MAKADEVCYDREMKDYGPAKGGKKK 87
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 75.1 bits (183), Expect = 1e-14
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 2 MNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTAT 61
M G K +K+DP P+RPPS F LFC + ++K NP S+ VAK G+MW+
Sbjct: 75 MKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLN 134
Query: 62 DLEKHPYEQRVALLRAKYFEEL 83
D EK PY + A L+ KY +++
Sbjct: 135 DSEKQPYVTKAAKLKEKYEKDV 156
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP++P+ S++ Q + K++NP V + +K W T + EK + +
Sbjct: 3 KGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKFGE 62
Query: 71 RVALLRAKYFEELELYRKQCNARKK 95
Y E++ Y +KK
Sbjct: 63 MAKADEVCYDREMKDYGPAKGGKKK 87
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 75.1 bits (183), Expect = 1e-14
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 2 MNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTAT 61
M G K +K+DP P+RPPS F LFC + ++K NP S+ VAK G+MW+
Sbjct: 75 MKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLN 134
Query: 62 DLEKHPYEQRVALLRAKYFEEL 83
D EK PY + A L+ KY +++
Sbjct: 135 DSEKQPYVTKAAKLKEKYEKDV 156
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP++P+ S++ Q + K++NP V + +K W T + EK + +
Sbjct: 3 KGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKFGE 62
Query: 71 RVALLRAKYFEELELYRKQCNARKK 95
Y E++ Y +KK
Sbjct: 63 MAKADEVCYDREMKDYGPAKGGKKK 87
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 73.9 bits (180), Expect = 2e-14
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 6 GKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEK 65
G K +K+DP P+RPPS F LFC + + K NP + VAK G+MW D EK
Sbjct: 79 GPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEK 138
Query: 66 HPYEQRVALLRAKYFEELELYRKQ 89
PY + A L+ KY +++ +Y+ +
Sbjct: 139 QPYITQAAKLKEKYEKDVAVYKSK 162
Score = 37.0 bits (84), Expect = 0.003
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP++P+ S++ F Q + K++NP + + +K + W T + EK + +
Sbjct: 3 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNE 62
Query: 71 RVALLRAKYFEELELYRKQCNARKK 95
+ Y +E++ Y +KK
Sbjct: 63 LAKADKVHYDQEIKDYGPAKGGKKK 87
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 73.9 bits (180), Expect = 2e-14
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 6 GKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEK 65
G K +K+DP P+RPPS F LFC + + K NP + VAK G+MW D EK
Sbjct: 79 GPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEK 138
Query: 66 HPYEQRVALLRAKYFEELELYRKQ 89
PY + A L+ KY +++ +Y+ +
Sbjct: 139 QPYITQAAKLKEKYEKDVAVYKSK 162
Score = 37.0 bits (84), Expect = 0.003
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP++P+ S++ F Q + K++NP + + +K + W T + EK + +
Sbjct: 3 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNE 62
Query: 71 RVALLRAKYFEELELYRKQCNARKK 95
+ Y +E++ Y +KK
Sbjct: 63 LAKADKVHYDQEIKDYGPAKGGKKK 87
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 73.6 bits (179), Expect = 3e-14
Identities = 30/78 (38%), Positives = 52/78 (66%)
Query: 10 KRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYE 69
K++ +DP P+RPPS+F LFC +++ ++K E+P S+ VAK G+MW+ +K P E
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGE 145
Query: 70 QRVALLRAKYFEELELYR 87
++ A L+ KY +++ Y+
Sbjct: 146 KKAAKLKEKYEKDIAAYQ 163
Score = 32.3 bits (72), Expect = 0.083
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
K DP++PR SS+ F Q + K+++ + SV + + + W T + EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFED 62
Query: 71 RVALLRAKYFEELELY 86
+ Y +++ Y
Sbjct: 63 MAKADKTHYERQMKTY 78
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 70.1 bits (170), Expect = 4e-13
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 10 KRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYE 69
K++ +DP P+RPPS+F L+ ++ ++K E P S VAK G+MW+ +K PYE
Sbjct: 222 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYE 281
Query: 70 QRVALLRAKYFEELELYR 87
+R A L+ KY +++ YR
Sbjct: 282 KRSAKLKEKYEKDIAAYR 299
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 70.1 bits (170), Expect = 4e-13
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 10 KRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYE 69
K++ +DP P+RPPS+F L+ ++ ++K E P S VAK G+MW+ +K PYE
Sbjct: 222 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYE 281
Query: 70 QRVALLRAKYFEELELYR 87
+R A L+ KY +++ YR
Sbjct: 282 KRSAKLKEKYEKDIAAYR 299
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 70.1 bits (170), Expect = 4e-13
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 10 KRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYE 69
K++ +DP P+RPPS+F L+ ++ ++K E P S VAK G+MW+ +K PYE
Sbjct: 222 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYE 281
Query: 70 QRVALLRAKYFEELELYR 87
+R A L+ KY +++ YR
Sbjct: 282 KRSAKLKEKYEKDIAAYR 299
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 69.3 bits (168), Expect = 6e-13
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 9 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 68
KK++ +DP P+RPP +F LFC ++ ++K E+P S+ V K MW+ +K Y
Sbjct: 759 KKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFY 818
Query: 69 EQRVALLRAKYFEELELYR---KQCNARKK 95
E++ A L+ KY +++ YR K +A+K+
Sbjct: 819 EKKAAKLKEKYKKDIAAYRAKGKPNSAKKR 848
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 30 CQDHYAQLKRENPNWSVV--QVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYR 87
C++H K++NP+ SV + K + W T EK +E +A Y E++ Y
Sbjct: 698 CEEH----KKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYI 753
Query: 88 KQCNARKK 95
+KK
Sbjct: 754 PPKGEKKK 761
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 68.6 bits (166), Expect = 1e-12
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 11 RRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQ 70
++K+DP P+RPPS F LF + ++K NP S+ VAK G+MW+ D EK PY
Sbjct: 80 KKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYIT 139
Query: 71 RVALLRAKYFEEL 83
+ A L+ KY +++
Sbjct: 140 KTAKLKEKYEKDV 152
Score = 33.1 bits (74), Expect = 0.049
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQ 70
K DP++P+ S+++ F Q + K++NP + + +K + W T + EK +++
Sbjct: 3 KGDPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDE 59
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 68.6 bits (166), Expect = 1e-12
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 11 RRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQ 70
++K+DP P+RPPS F LF + ++K NP S+ VAK G+MW+ D EK PY
Sbjct: 80 KKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYIT 139
Query: 71 RVALLRAKYFEEL 83
+ A L+ KY +++
Sbjct: 140 KTAKLKEKYEKDV 152
Score = 33.1 bits (74), Expect = 0.049
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQ 70
K DP++P+ S+++ F Q + K++NP + + +K + W T + EK +++
Sbjct: 3 KGDPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDE 59
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 68.6 bits (166), Expect = 1e-12
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 11 RRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQ 70
++K+DP P+RPPS F LF + ++K NP S+ VAK G+MW+ D EK PY
Sbjct: 62 KKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYIT 121
Query: 71 RVALLRAKYFEEL 83
+ A L+ KY +++
Sbjct: 122 KTAKLKEKYEKDV 134
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 68.6 bits (166), Expect = 1e-12
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 11 RRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQ 70
++K+DP P+RPPS F LF + ++K NP S+ VAK G+MW+ D EK PY
Sbjct: 80 KKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYIT 139
Query: 71 RVALLRAKYFEEL 83
+ A L+ KY +++
Sbjct: 140 KTAKLKEKYEKDV 152
Score = 33.1 bits (74), Expect = 0.049
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQ 70
K DP++P+ S+++ F Q + K++NP + + +K + W T + EK +++
Sbjct: 3 KGDPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDE 59
>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
Length = 621
Score = 65.9 bits (159), Expect = 7e-12
Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 9 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 68
KKR+K+DP EP++P S++ LF +D A +K +NPN + +V+K MW + + +K Y
Sbjct: 213 KKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
Query: 69 EQRVALLRAKYFEELELYR--KQCNA 92
+++ + +Y + L Y+ ++C A
Sbjct: 273 KRKTEAAKKEYLKALAAYKDNQECQA 298
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 65.1 bits (157), Expect = 1e-11
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 12 RKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQR 71
+K+DP +RP S F LFC + + ++K NP S+ +AK G+MW +D EK PY +
Sbjct: 85 KKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITK 144
Query: 72 VALLRAKYFEELELYRKQ 89
A L+ KY +++ Y+ +
Sbjct: 145 AADLKEKYEKDVADYKSK 162
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 15 DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQRV 72
D ++P+ S++ F Q + K++NP V V+ +K + T + EK +++
Sbjct: 5 DHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMA 64
Query: 73 ALLRAKYFEELE 84
+ + Y +E++
Sbjct: 65 KVDKVHYDQEMK 76
>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 65.1 bits (157), Expect = 1e-11
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 12 RKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQR 71
+K+DP +RP S F LFC + + ++K NP S+ +AK G+MW +D EK PY +
Sbjct: 85 KKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITK 144
Query: 72 VALLRAKYFEELELYRKQ 89
A L+ KY +++ Y+ +
Sbjct: 145 AADLKEKYEKDVADYKSK 162
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 15 DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQRV 72
D ++P+ S++ F Q + K++NP V V+ +K + T + EK +++
Sbjct: 5 DHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMA 64
Query: 73 ALLRAKYFEELE 84
+ + Y +E++
Sbjct: 65 KVDKVHYDQEMK 76
>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
sapiens]
Length = 201
Score = 65.1 bits (157), Expect = 1e-11
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 12 RKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQR 71
+K+DP +RP S F LFC + + ++K NP S+ +AK G+MW +D EK PY +
Sbjct: 85 KKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITK 144
Query: 72 VALLRAKYFEELELYRKQ 89
A L+ KY +++ Y+ +
Sbjct: 145 AADLKEKYEKDVADYKSK 162
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 15 DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQRV 72
D ++P+ S++ F Q + K++NP V V+ +K + T + EK +++
Sbjct: 5 DHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMA 64
Query: 73 ALLRAKYFEELE 84
+ + Y +E++
Sbjct: 65 KVDKVHYDQEMK 76
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 64.7 bits (156), Expect = 2e-11
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 9 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 68
KK++K+DP EP++P S++ LF +D A +K +NPN + +V+K MW + + +K Y
Sbjct: 240 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 299
Query: 69 EQRVALLRAKYFEELELYR 87
+++ + +Y + L YR
Sbjct: 300 KRKTEAAKKEYLKALAAYR 318
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 64.7 bits (156), Expect = 2e-11
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 9 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 68
KK++K+DP EP++P S++ LF +D A +K +NPN + +V+K MW + + +K Y
Sbjct: 245 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 304
Query: 69 EQRVALLRAKYFEELELYR 87
+++ + +Y + L YR
Sbjct: 305 KRKTEAAKKEYLKALAAYR 323
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 64.7 bits (156), Expect = 2e-11
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 9 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 68
KK++K+DP EP++P S++ LF +D A +K +NPN + +V+K MW + +K Y
Sbjct: 251 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVY 310
Query: 69 EQRVALLRAKYFEELELYR 87
+++ + +Y ++L YR
Sbjct: 311 KKKTEAAKKEYLKQLAAYR 329
>gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 227
Score = 62.4 bits (150), Expect = 8e-11
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Query: 10 KRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYE 69
K + DP P+ PP +F +F + ++K E+P S+ VAK G+MW+ + +KHPYE
Sbjct: 82 KMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDKHPYE 140
Query: 70 QRVALLRAKYFEELELY--RKQCNARKKYRMSARNRCRGKR 108
++ L+ KY +++ + + + +A KK + A +C+ K+
Sbjct: 141 KKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA-EKCKKKK 180
>gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 62.4 bits (150), Expect = 8e-11
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Query: 10 KRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYE 69
K + DP P+ PP +F +F + ++K E+P S+ VAK G+MW+ + +KHPYE
Sbjct: 55 KMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDKHPYE 113
Query: 70 QRVALLRAKYFEELELY--RKQCNARKKYRMSARNRCRGKR 108
++ L+ KY +++ + + + +A KK + A +C+ K+
Sbjct: 114 KKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA-EKCKKKK 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,545,905
Number of Sequences: 37866
Number of extensions: 174161
Number of successful extensions: 804
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 146
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.