Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC441795 Sequence: fasta or formatted (207aa) NCBI GI: 239745831
Description:

PREDICTED: high mobility group protein B3-like protein-like

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt mRNA [207aa] PREDICTED: high mobility group protein B3-like protein-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         15           2
 C cysteine            2.9          6           1
 D aspartate           5.3         11           1
 E glutamate           8.7         18           3
 F phenylalanine       5.3         11           2
 G glycine             5.8         12           2
 H histidine           1.9          4           1
 I isoleucine          3.4          7           1
 K lysine             20.3         42           3
 L leucine             3.9          8           1
 M methionine          1.9          4           1
 N asparagine          3.4          7           1
 P proline             6.8         14           2
 Q glutamine           2.4          5           1
 R arginine            1.4          3           1
 S serine              6.3         13           1
 T threonine           2.9          6           1
 V valine              4.8         10           1
 W tryptophan          1.4          3           1
 Y tyrosine            3.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: high mobility group protein B3-like prot... 
LOC441795             1.000   PREDICTED: high mobility group protein B3-like prot...
HMGB3                 0.793   high-mobility group box 3 
LOC646993             0.727   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.727   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.718   PREDICTED: similar to high mobility group box 3 [Ho...
LOC203510             0.686   PREDICTED: similar to hCG1644442 
LOC203510             0.686   PREDICTED: similar to hCG1644442 
LOC203510             0.686   PREDICTED: hypothetical protein LOC203510 
LOC729595             0.684   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.684   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.684   PREDICTED: similar to high mobility group box 3 iso...
HMGB2                 0.603   high-mobility group box 2 
HMGB2                 0.603   high-mobility group box 2 
HMGB2                 0.603   high-mobility group box 2 
HMGB1                 0.591   high-mobility group box 1 
HMGB1L1               0.569   high-mobility group box 1-like 1 
LOC729595             0.530   PREDICTED: similar to high mobility group box 3 iso...
SP100                 0.423   nuclear antigen Sp100 isoform 2 
LOC645490             0.406   PREDICTED: similar to hCG1991922 
LOC645490             0.406   PREDICTED: similar to hCG1991922 
LOC645490             0.406   PREDICTED: similar to hCG1991922 
HMGB4                 0.280   HMG2 like isoform 1 
LOC644129             0.251   PREDICTED: similar to hCG1647425 
LOC644129             0.251   PREDICTED: similar to hCG1647425 
LOC644129             0.217   PREDICTED: similar to hCG1647425 
SSRP1                 0.127   structure specific recognition protein 1 
LOC645101             0.122   PREDICTED: similar to high-mobility group box 2 [Ho...
LOC645101             0.122   PREDICTED: similar to high-mobility group box 2 [Ho...
LOC645101             0.122   PREDICTED: similar to high-mobility group box 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press