Guide to the Human Genome
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Name: LOC203510 Sequence: fasta or formatted (201aa) NCBI GI: 169216377
Description:

PREDICTED: similar to hCG1644442

Not currently referenced in the text

Other entries for this name:
alt mRNA {201aa} PREDICTED: hypothetical protein LOC203510
alt mRNA {201aa} PREDICTED: similar to hCG1644442
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         12           2
 C cysteine            1.5          3           1
 D aspartate           7.0         14           1
 E glutamate          14.4         29           9
 F phenylalanine       5.0         10           2
 G glycine             6.5         13           2
 H histidine           2.0          4           1
 I isoleucine          3.0          6           1
 K lysine             20.9         42           3
 L leucine             2.5          5           1
 M methionine          3.5          7           1
 N asparagine          3.0          6           1
 P proline             5.0         10           1
 Q glutamine           1.5          3           1
 R arginine            2.0          4           1
 S serine              5.5         11           1
 T threonine           3.0          6           1
 V valine              4.0          8           1
 W tryptophan          1.0          2           1
 Y tyrosine            3.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1644442 
LOC203510             1.000   PREDICTED: similar to hCG1644442 
LOC203510             1.000   PREDICTED: hypothetical protein LOC203510 
HMGB3                 0.804   high-mobility group box 3 
LOC646993             0.720   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.720   PREDICTED: similar to high mobility group box 3 [Ho...
LOC441795             0.718   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.718   PREDICTED: high mobility group protein B3-like prot...
LOC646993             0.710   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.667   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.667   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.667   PREDICTED: similar to high mobility group box 3 iso...
HMGB2                 0.603   high-mobility group box 2 
HMGB2                 0.603   high-mobility group box 2 
HMGB2                 0.603   high-mobility group box 2 
HMGB1                 0.595   high-mobility group box 1 
HMGB1L1               0.583   high-mobility group box 1-like 1 
LOC729595             0.524   PREDICTED: similar to high mobility group box 3 iso...
SP100                 0.438   nuclear antigen Sp100 isoform 2 
LOC645490             0.417   PREDICTED: similar to hCG1991922 
LOC645490             0.412   PREDICTED: similar to hCG1991922 
LOC645490             0.412   PREDICTED: similar to hCG1991922 
HMGB4                 0.244   HMG2 like isoform 1 
LOC644129             0.219   PREDICTED: similar to hCG1647425 
LOC644129             0.219   PREDICTED: similar to hCG1647425 
LOC644129             0.191   PREDICTED: similar to hCG1647425 
SSRP1                 0.155   structure specific recognition protein 1 
LOC645101             0.120   PREDICTED: similar to high-mobility group box 2 [Ho...
LOC645101             0.120   PREDICTED: similar to high-mobility group box 2 [Ho...
LOC645101             0.120   PREDICTED: similar to high-mobility group box 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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