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Search of human proteins with 56550086
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56550086 WD repeat and HMG-box DNA binding protein 1 isoform
2 [Homo sapiens]
(1006 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56550086 WD repeat and HMG-box DNA binding protein 1 isoform ... 2040 0.0
gi|5901892 WD repeat and HMG-box DNA binding protein 1 isoform 1... 2040 0.0
gi|213021190 transducin beta-like 1X isoform b [Homo sapiens] 59 2e-08
gi|213021188 transducin beta-like 1X isoform b [Homo sapiens] 59 2e-08
gi|213021186 transducin beta-like 1X isoform a [Homo sapiens] 59 2e-08
gi|5032159 transducin beta-like 1X isoform a [Homo sapiens] 59 2e-08
gi|19913367 transducin beta-like 1Y [Homo sapiens] 59 3e-08
gi|19913365 transducin beta-like 1Y [Homo sapiens] 59 3e-08
gi|15150805 transducin beta-like 1Y [Homo sapiens] 59 3e-08
gi|124256480 APG16 autophagy 16-like isoform 1 [Homo sapiens] 57 9e-08
gi|124256478 APG16 autophagy 16-like isoform 2 [Homo sapiens] 57 9e-08
gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo s... 56 2e-07
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 55 4e-07
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre... 55 4e-07
gi|26665869 WD repeat domain 51B [Homo sapiens] 55 4e-07
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 52 2e-06
gi|109948304 smu-1 suppressor of mec-8 and unc-52 homolog [Homo ... 52 3e-06
gi|16554629 WD repeat domain 5 [Homo sapiens] 51 6e-06
gi|16554627 WD repeat domain 5 [Homo sapiens] 51 6e-06
gi|239787764 WD repeat domain 51A isoform 3 [Homo sapiens] 51 6e-06
gi|239787760 WD repeat domain 51A isoform 2 [Homo sapiens] 51 6e-06
gi|239787754 WD repeat domain 51A isoform 1 [Homo sapiens] 51 6e-06
gi|4757988 WD repeat domain 39 [Homo sapiens] 50 1e-05
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 48 4e-05
gi|21071067 TBP-associated factor 5 [Homo sapiens] 48 5e-05
gi|4557741 platelet-activating factor acetylhydrolase, isoform I... 47 9e-05
gi|83779014 katanin p80 subunit B 1 [Homo sapiens] 47 1e-04
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 46 2e-04
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 46 2e-04
gi|88759339 aster-associated protein [Homo sapiens] 46 2e-04
>gi|56550086 WD repeat and HMG-box DNA binding protein 1 isoform 2
[Homo sapiens]
Length = 1006
Score = 2040 bits (5285), Expect = 0.0
Identities = 1006/1006 (100%), Positives = 1006/1006 (100%)
Query: 1 MDSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDV 60
MDSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDV
Sbjct: 1 MDSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDV 60
Query: 61 INAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQ 120
INAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQ
Sbjct: 61 INAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQ 120
Query: 121 YLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLENV 180
YLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLENV
Sbjct: 121 YLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLENV 180
Query: 181 CDPSGKTSSSKVSSRVEKDYNDLFDGDDMSNAGDFLNDNAVEIPSFSKGIINDDEDDEDL 240
CDPSGKTSSSKVSSRVEKDYNDLFDGDDMSNAGDFLNDNAVEIPSFSKGIINDDEDDEDL
Sbjct: 181 CDPSGKTSSSKVSSRVEKDYNDLFDGDDMSNAGDFLNDNAVEIPSFSKGIINDDEDDEDL 240
Query: 241 MMASGRPRQRSHILEDDENSVDISMLKTGSSLLKEEEEDGQEGSIHNLPLVTSQRPFYDG 300
MMASGRPRQRSHILEDDENSVDISMLKTGSSLLKEEEEDGQEGSIHNLPLVTSQRPFYDG
Sbjct: 241 MMASGRPRQRSHILEDDENSVDISMLKTGSSLLKEEEEDGQEGSIHNLPLVTSQRPFYDG 300
Query: 301 PMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSN 360
PMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSN
Sbjct: 301 PMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSN 360
Query: 361 TLNYTIADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIIDLPQNEDIEAICLGQG 420
TLNYTIADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIIDLPQNEDIEAICLGQG
Sbjct: 361 TLNYTIADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIIDLPQNEDIEAICLGQG 420
Query: 421 WAAAATSALLLRLFTIGGVQKEVFSLAGPVVSMAGHGEQLFIVYHRGTGFDGDQCLGVQL 480
WAAAATSALLLRLFTIGGVQKEVFSLAGPVVSMAGHGEQLFIVYHRGTGFDGDQCLGVQL
Sbjct: 421 WAAAATSALLLRLFTIGGVQKEVFSLAGPVVSMAGHGEQLFIVYHRGTGFDGDQCLGVQL 480
Query: 481 LELGKKKKQILHGDPLPLTRKSYLAWIGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPICN 540
LELGKKKKQILHGDPLPLTRKSYLAWIGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPICN
Sbjct: 481 LELGKKKKQILHGDPLPLTRKSYLAWIGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPICN 540
Query: 541 TREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQIATEKG 600
TREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQIATEKG
Sbjct: 541 TREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQIATEKG 600
Query: 601 QMEEQFWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLMKMLALSCKLEREFRCVE 660
QMEEQFWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLMKMLALSCKLEREFRCVE
Sbjct: 601 QMEEQFWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLMKMLALSCKLEREFRCVE 660
Query: 661 LADLMTQNAVNLAIKYASRSRKLILAQKLSELAVEKAAELTATQVEEEEEEEDFRKKLNA 720
LADLMTQNAVNLAIKYASRSRKLILAQKLSELAVEKAAELTATQVEEEEEEEDFRKKLNA
Sbjct: 661 LADLMTQNAVNLAIKYASRSRKLILAQKLSELAVEKAAELTATQVEEEEEEEDFRKKLNA 720
Query: 721 GYSNTATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAV 780
GYSNTATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAV
Sbjct: 721 GYSNTATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAV 780
Query: 781 TFSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKP 840
TFSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKP
Sbjct: 781 TFSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKP 840
Query: 841 LIPKPKPKQASAASYFQKRNSQTNKTEEVKEENLKNVLSETPAICPPQNTENQRPKTGFQ 900
LIPKPKPKQASAASYFQKRNSQTNKTEEVKEENLKNVLSETPAICPPQNTENQRPKTGFQ
Sbjct: 841 LIPKPKPKQASAASYFQKRNSQTNKTEEVKEENLKNVLSETPAICPPQNTENQRPKTGFQ 900
Query: 901 MWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTEAKKR 960
MWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTEAKKR
Sbjct: 901 MWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTEAKKR 960
Query: 961 KRVVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE 1006
KRVVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE
Sbjct: 961 KRVVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE 1006
>gi|5901892 WD repeat and HMG-box DNA binding protein 1 isoform 1
[Homo sapiens]
Length = 1129
Score = 2040 bits (5285), Expect = 0.0
Identities = 1006/1006 (100%), Positives = 1006/1006 (100%)
Query: 1 MDSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDV 60
MDSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDV
Sbjct: 124 MDSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDV 183
Query: 61 INAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQ 120
INAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQ
Sbjct: 184 INAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQ 243
Query: 121 YLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLENV 180
YLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLENV
Sbjct: 244 YLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLENV 303
Query: 181 CDPSGKTSSSKVSSRVEKDYNDLFDGDDMSNAGDFLNDNAVEIPSFSKGIINDDEDDEDL 240
CDPSGKTSSSKVSSRVEKDYNDLFDGDDMSNAGDFLNDNAVEIPSFSKGIINDDEDDEDL
Sbjct: 304 CDPSGKTSSSKVSSRVEKDYNDLFDGDDMSNAGDFLNDNAVEIPSFSKGIINDDEDDEDL 363
Query: 241 MMASGRPRQRSHILEDDENSVDISMLKTGSSLLKEEEEDGQEGSIHNLPLVTSQRPFYDG 300
MMASGRPRQRSHILEDDENSVDISMLKTGSSLLKEEEEDGQEGSIHNLPLVTSQRPFYDG
Sbjct: 364 MMASGRPRQRSHILEDDENSVDISMLKTGSSLLKEEEEDGQEGSIHNLPLVTSQRPFYDG 423
Query: 301 PMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSN 360
PMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSN
Sbjct: 424 PMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSN 483
Query: 361 TLNYTIADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIIDLPQNEDIEAICLGQG 420
TLNYTIADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIIDLPQNEDIEAICLGQG
Sbjct: 484 TLNYTIADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIIDLPQNEDIEAICLGQG 543
Query: 421 WAAAATSALLLRLFTIGGVQKEVFSLAGPVVSMAGHGEQLFIVYHRGTGFDGDQCLGVQL 480
WAAAATSALLLRLFTIGGVQKEVFSLAGPVVSMAGHGEQLFIVYHRGTGFDGDQCLGVQL
Sbjct: 544 WAAAATSALLLRLFTIGGVQKEVFSLAGPVVSMAGHGEQLFIVYHRGTGFDGDQCLGVQL 603
Query: 481 LELGKKKKQILHGDPLPLTRKSYLAWIGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPICN 540
LELGKKKKQILHGDPLPLTRKSYLAWIGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPICN
Sbjct: 604 LELGKKKKQILHGDPLPLTRKSYLAWIGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPICN 663
Query: 541 TREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQIATEKG 600
TREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQIATEKG
Sbjct: 664 TREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQIATEKG 723
Query: 601 QMEEQFWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLMKMLALSCKLEREFRCVE 660
QMEEQFWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLMKMLALSCKLEREFRCVE
Sbjct: 724 QMEEQFWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLMKMLALSCKLEREFRCVE 783
Query: 661 LADLMTQNAVNLAIKYASRSRKLILAQKLSELAVEKAAELTATQVEEEEEEEDFRKKLNA 720
LADLMTQNAVNLAIKYASRSRKLILAQKLSELAVEKAAELTATQVEEEEEEEDFRKKLNA
Sbjct: 784 LADLMTQNAVNLAIKYASRSRKLILAQKLSELAVEKAAELTATQVEEEEEEEDFRKKLNA 843
Query: 721 GYSNTATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAV 780
GYSNTATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAV
Sbjct: 844 GYSNTATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAV 903
Query: 781 TFSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKP 840
TFSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKP
Sbjct: 904 TFSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKP 963
Query: 841 LIPKPKPKQASAASYFQKRNSQTNKTEEVKEENLKNVLSETPAICPPQNTENQRPKTGFQ 900
LIPKPKPKQASAASYFQKRNSQTNKTEEVKEENLKNVLSETPAICPPQNTENQRPKTGFQ
Sbjct: 964 LIPKPKPKQASAASYFQKRNSQTNKTEEVKEENLKNVLSETPAICPPQNTENQRPKTGFQ 1023
Query: 901 MWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTEAKKR 960
MWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTEAKKR
Sbjct: 1024 MWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTEAKKR 1083
Query: 961 KRVVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE 1006
KRVVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE
Sbjct: 1084 KRVVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE 1129
>gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 59.3 bits (142), Expect = 2e-08
Identities = 43/181 (23%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
KTF+GH V ++ +DP + LAS S D ++++W + + C LQ N K I
Sbjct: 355 KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHD---LQAHN-----KEI 406
Query: 67 CRLAWQP---------KSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSP 117
+ W P + L + + +V+L+ E L+ + + + V +SP
Sbjct: 407 YTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKH--QEPVYSVAFSP 464
Query: 118 CGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLL 177
G+YLA+GS + + +WN ++ + + + G I + W+ ++ + ++G++ +L
Sbjct: 465 DGKYLASGSFDKCVHIWNTQSGNLVHSYRGTGG--IFEVCWNARGDKVGASASDGSVCVL 522
Query: 178 E 178
+
Sbjct: 523 D 523
Score = 47.0 bits (110), Expect = 9e-05
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 3 SSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPL-LQKC---- 57
SS+ RGH++ V +++P LAS S D + R+W +++ + S L L+ C
Sbjct: 171 SSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREG 230
Query: 58 -NDVINAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQ--TLNIVT 114
+DV + K + L W +G LLA S + R W+ +L+ + +
Sbjct: 231 GHDVPSNKDVTSLDWN-TNGTLLA---TGSYDGFAR-IWTEDGNLASTLGQHKGPIFALK 285
Query: 115 WSPCGQYLAAGSINGLIIVWNVETKDCMER 144
W+ G Y+ + ++ I+W+ T + ++
Sbjct: 286 WNRKGNYILSAGVDKTTIIWDAHTGEAKQQ 315
>gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 59.3 bits (142), Expect = 2e-08
Identities = 43/181 (23%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
KTF+GH V ++ +DP + LAS S D ++++W + + C LQ N K I
Sbjct: 355 KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHD---LQAHN-----KEI 406
Query: 67 CRLAWQP---------KSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSP 117
+ W P + L + + +V+L+ E L+ + + + V +SP
Sbjct: 407 YTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKH--QEPVYSVAFSP 464
Query: 118 CGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLL 177
G+YLA+GS + + +WN ++ + + + G I + W+ ++ + ++G++ +L
Sbjct: 465 DGKYLASGSFDKCVHIWNTQSGNLVHSYRGTGG--IFEVCWNARGDKVGASASDGSVCVL 522
Query: 178 E 178
+
Sbjct: 523 D 523
Score = 47.0 bits (110), Expect = 9e-05
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 3 SSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPL-LQKC---- 57
SS+ RGH++ V +++P LAS S D + R+W +++ + S L L+ C
Sbjct: 171 SSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREG 230
Query: 58 -NDVINAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQ--TLNIVT 114
+DV + K + L W +G LLA S + R W+ +L+ + +
Sbjct: 231 GHDVPSNKDVTSLDWN-TNGTLLA---TGSYDGFAR-IWTEDGNLASTLGQHKGPIFALK 285
Query: 115 WSPCGQYLAAGSINGLIIVWNVETKDCMER 144
W+ G Y+ + ++ I+W+ T + ++
Sbjct: 286 WNRKGNYILSAGVDKTTIIWDAHTGEAKQQ 315
>gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 59.3 bits (142), Expect = 2e-08
Identities = 43/181 (23%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
KTF+GH V ++ +DP + LAS S D ++++W + + C LQ N K I
Sbjct: 406 KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHD---LQAHN-----KEI 457
Query: 67 CRLAWQP---------KSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSP 117
+ W P + L + + +V+L+ E L+ + + + V +SP
Sbjct: 458 YTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKH--QEPVYSVAFSP 515
Query: 118 CGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLL 177
G+YLA+GS + + +WN ++ + + + G I + W+ ++ + ++G++ +L
Sbjct: 516 DGKYLASGSFDKCVHIWNTQSGNLVHSYRGTGG--IFEVCWNARGDKVGASASDGSVCVL 573
Query: 178 E 178
+
Sbjct: 574 D 574
Score = 47.0 bits (110), Expect = 9e-05
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 3 SSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPL-LQKC---- 57
SS+ RGH++ V +++P LAS S D + R+W +++ + S L L+ C
Sbjct: 222 SSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREG 281
Query: 58 -NDVINAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQ--TLNIVT 114
+DV + K + L W +G LLA S + R W+ +L+ + +
Sbjct: 282 GHDVPSNKDVTSLDWN-TNGTLLA---TGSYDGFAR-IWTEDGNLASTLGQHKGPIFALK 336
Query: 115 WSPCGQYLAAGSINGLIIVWNVETKDCMER 144
W+ G Y+ + ++ I+W+ T + ++
Sbjct: 337 WNRKGNYILSAGVDKTTIIWDAHTGEAKQQ 366
>gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 59.3 bits (142), Expect = 2e-08
Identities = 43/181 (23%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
KTF+GH V ++ +DP + LAS S D ++++W + + C LQ N K I
Sbjct: 406 KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHD---LQAHN-----KEI 457
Query: 67 CRLAWQP---------KSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSP 117
+ W P + L + + +V+L+ E L+ + + + V +SP
Sbjct: 458 YTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKH--QEPVYSVAFSP 515
Query: 118 CGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLL 177
G+YLA+GS + + +WN ++ + + + G I + W+ ++ + ++G++ +L
Sbjct: 516 DGKYLASGSFDKCVHIWNTQSGNLVHSYRGTGG--IFEVCWNARGDKVGASASDGSVCVL 573
Query: 178 E 178
+
Sbjct: 574 D 574
Score = 47.0 bits (110), Expect = 9e-05
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 3 SSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPL-LQKC---- 57
SS+ RGH++ V +++P LAS S D + R+W +++ + S L L+ C
Sbjct: 222 SSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREG 281
Query: 58 -NDVINAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQ--TLNIVT 114
+DV + K + L W +G LLA S + R W+ +L+ + +
Sbjct: 282 GHDVPSNKDVTSLDWN-TNGTLLA---TGSYDGFAR-IWTEDGNLASTLGQHKGPIFALK 336
Query: 115 WSPCGQYLAAGSINGLIIVWNVETKDCMER 144
W+ G Y+ + ++ I+W+ T + ++
Sbjct: 337 WNRKGNYILSAGVDKTTIIWDAHTGEAKQQ 366
>gi|19913367 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 58.5 bits (140), Expect = 3e-08
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
KTF+GH V ++ +DP + LAS S D ++++W + C LQ ++K I
Sbjct: 353 KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHD---LQ-----AHSKEI 404
Query: 67 CRLAWQP---------KSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSP 117
+ W P S L + + +V+L+ E L + + + V +SP
Sbjct: 405 YTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGVCTHTLMKH--QEPVYSVAFSP 462
Query: 118 CGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLL 177
G+YLA+GS + + +WN ++ + + G I + W+ ++ + ++G++ +L
Sbjct: 463 DGKYLASGSFDKYVHIWNTQSGSLVHSYQGTGG--IFEVCWNARGDKVGASASDGSVCVL 520
Query: 178 E 178
+
Sbjct: 521 D 521
Score = 45.1 bits (105), Expect = 3e-04
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 10 RGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPL-LQKC-----NDVINA 63
RGH++ V +++P LAS S D + R+W +++ + S L L+ C +DV +
Sbjct: 176 RGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSN 235
Query: 64 KSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQ--TLNIVTWSPCGQY 121
K + L W G LLA+ S + R W+ +L+ + + W+ G Y
Sbjct: 236 KDVTSLDWN-SDGTLLAM---GSYDGFAR-IWTENGNLASTLGQHKGPIFALKWNKKGNY 290
Query: 122 LAAGSINGLIIVWNVETKDCMER 144
+ + ++ I+W+ T + ++
Sbjct: 291 VLSAGVDKTTIIWDAHTGEAKQQ 313
>gi|19913365 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 58.5 bits (140), Expect = 3e-08
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
KTF+GH V ++ +DP + LAS S D ++++W + C LQ ++K I
Sbjct: 353 KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHD---LQ-----AHSKEI 404
Query: 67 CRLAWQP---------KSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSP 117
+ W P S L + + +V+L+ E L + + + V +SP
Sbjct: 405 YTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGVCTHTLMKH--QEPVYSVAFSP 462
Query: 118 CGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLL 177
G+YLA+GS + + +WN ++ + + G I + W+ ++ + ++G++ +L
Sbjct: 463 DGKYLASGSFDKYVHIWNTQSGSLVHSYQGTGG--IFEVCWNARGDKVGASASDGSVCVL 520
Query: 178 E 178
+
Sbjct: 521 D 521
Score = 45.1 bits (105), Expect = 3e-04
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 10 RGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPL-LQKC-----NDVINA 63
RGH++ V +++P LAS S D + R+W +++ + S L L+ C +DV +
Sbjct: 176 RGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSN 235
Query: 64 KSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQ--TLNIVTWSPCGQY 121
K + L W G LLA+ S + R W+ +L+ + + W+ G Y
Sbjct: 236 KDVTSLDWN-SDGTLLAM---GSYDGFAR-IWTENGNLASTLGQHKGPIFALKWNKKGNY 290
Query: 122 LAAGSINGLIIVWNVETKDCMER 144
+ + ++ I+W+ T + ++
Sbjct: 291 VLSAGVDKTTIIWDAHTGEAKQQ 313
>gi|15150805 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 58.5 bits (140), Expect = 3e-08
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
KTF+GH V ++ +DP + LAS S D ++++W + C LQ ++K I
Sbjct: 353 KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHD---LQ-----AHSKEI 404
Query: 67 CRLAWQP---------KSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSP 117
+ W P S L + + +V+L+ E L + + + V +SP
Sbjct: 405 YTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGVCTHTLMKH--QEPVYSVAFSP 462
Query: 118 CGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLL 177
G+YLA+GS + + +WN ++ + + G I + W+ ++ + ++G++ +L
Sbjct: 463 DGKYLASGSFDKYVHIWNTQSGSLVHSYQGTGG--IFEVCWNARGDKVGASASDGSVCVL 520
Query: 178 E 178
+
Sbjct: 521 D 521
Score = 45.1 bits (105), Expect = 3e-04
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 10 RGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPL-LQKC-----NDVINA 63
RGH++ V +++P LAS S D + R+W +++ + S L L+ C +DV +
Sbjct: 176 RGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSN 235
Query: 64 KSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQ--TLNIVTWSPCGQY 121
K + L W G LLA+ S + R W+ +L+ + + W+ G Y
Sbjct: 236 KDVTSLDWN-SDGTLLAM---GSYDGFAR-IWTENGNLASTLGQHKGPIFALKWNKKGNY 290
Query: 122 LAAGSINGLIIVWNVETKDCMER 144
+ + ++ I+W+ T + ++
Sbjct: 291 VLSAGVDKTTIIWDAHTGEAKQQ 313
>gi|124256480 APG16 autophagy 16-like isoform 1 [Homo sapiens]
Length = 607
Score = 57.0 bits (136), Expect = 9e-08
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 34/201 (16%)
Query: 2 DSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVI 61
D + T GH VLS F + + S S D ++++W + + C + CND++
Sbjct: 397 DYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIV 456
Query: 62 NAKSICRLA---------WQPKS----------GKLLAI---PVEKSVKLYRRESWSHQF 99
+ C ++ W +S GK+ A+ P + R+
Sbjct: 457 CTEQ-CVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKVI 515
Query: 100 DLSDNFISQTLNI-----------VTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKHE 148
DL N I QT + V +SP G Y+AAGS G + +W+V T + + +
Sbjct: 516 DLRTNAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQ 575
Query: 149 KGYAICGLAWHPTCGRISYTD 169
+I +AW P+ + D
Sbjct: 576 HSSSINAVAWSPSGSHVVSVD 596
Score = 31.2 bits (69), Expect = 5.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 9 FRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTC 47
F HD V ++ F P LA+ D V++W++ + C
Sbjct: 318 FDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKC 356
>gi|124256478 APG16 autophagy 16-like isoform 2 [Homo sapiens]
Length = 588
Score = 57.0 bits (136), Expect = 9e-08
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 34/201 (16%)
Query: 2 DSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVI 61
D + T GH VLS F + + S S D ++++W + + C + CND++
Sbjct: 378 DYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIV 437
Query: 62 NAKSICRLA---------WQPKS----------GKLLAI---PVEKSVKLYRRESWSHQF 99
+ C ++ W +S GK+ A+ P + R+
Sbjct: 438 CTEQ-CVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKVI 496
Query: 100 DLSDNFISQTLNI-----------VTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKHE 148
DL N I QT + V +SP G Y+AAGS G + +W+V T + + +
Sbjct: 497 DLRTNAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQ 556
Query: 149 KGYAICGLAWHPTCGRISYTD 169
+I +AW P+ + D
Sbjct: 557 HSSSINAVAWSPSGSHVVSVD 577
Score = 31.2 bits (69), Expect = 5.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 9 FRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTC 47
F HD V ++ F P LA+ D V++W++ + C
Sbjct: 299 FDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKC 337
>gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo
sapiens]
Length = 514
Score = 55.8 bits (133), Expect = 2e-07
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 21/181 (11%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
KTF+GH V ++ +DP LAS S D ++++W + C LQ N K I
Sbjct: 343 KTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHD---LQAHN-----KEI 394
Query: 67 CRLAWQPKSG---------KLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSP 117
+ W P L + + +V+L+ + L+ + + + V +SP
Sbjct: 395 YTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKH--QEPVYSVAFSP 452
Query: 118 CGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLL 177
G+YLA+GS + + +WN +T + + G I + W+ ++ + ++G++ +L
Sbjct: 453 DGRYLASGSFDKCVHIWNTQTGALVHSYRGTGG--IFEVCWNAAGDKVGASASDGSVCVL 510
Query: 178 E 178
+
Sbjct: 511 D 511
Score = 44.7 bits (104), Expect = 4e-04
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 10 RGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPL-LQKC-----NDVINA 63
RGH++ V +++P LAS S D + R+W +S+ + + S L L+ C DV +
Sbjct: 166 RGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSN 225
Query: 64 KSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQ--TLNIVTWSPCGQY 121
K + L W G LLA S + R W+ +L+ + + W+ G +
Sbjct: 226 KDVTSLDWN-SEGTLLA---TGSYDGFAR-IWTKDGNLASTLGQHKGPIFALKWNKKGNF 280
Query: 122 LAAGSINGLIIVWNVETKDCMER 144
+ + ++ I+W+ T + ++
Sbjct: 281 ILSAGVDKTTIIWDAHTGEAKQQ 303
>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precursor
[Homo sapiens]
Length = 513
Score = 54.7 bits (130), Expect = 4e-07
Identities = 60/284 (21%), Positives = 123/284 (43%), Gaps = 15/284 (5%)
Query: 726 ATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAVTFSSQ 785
A+E S P+ ++ ++ +S E D+E++ + KP ++ + S + G+ SS
Sbjct: 146 ASEESAPQGQDSAQDTTSESRELDNEDRVD-SKPEGGDSTQESESEEHWVGGGSDGESSH 204
Query: 786 GRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKPL-IPK 844
G + + S+ S R + +++ G SK+S S N + S + L P
Sbjct: 205 GDGSELDDEGMQSDDPESIRSERGNSRMNSAGMKSKESGENSEQANTQDSGGSQLLEHPS 264
Query: 845 PKPKQASAASYFQKRN--SQTNKTEEVKEENLKNVLSETPAICPPQNTENQRPKTGFQMW 902
K + S S R+ N EEVK ++ +N S + P+ K Q
Sbjct: 265 RKIFRKSRISEEDDRSELDDNNTMEEVKSDSTENSNSRDTGLSQPRRDS----KGDSQED 320
Query: 903 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTEAKKRKR 962
+EN S S N D ++ +E + + S+E ++ ++++G+ T
Sbjct: 321 SKENLSQEESQNVD-GPSSESSQEANLSSQENSSESQEEVVSESRGDNPDPTTS------ 373
Query: 963 VVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE 1006
V++ +++++ EE + L+ SK + + + ++ + F +E
Sbjct: 374 YVEDQEDSDSSEEDSSHTLSHSKSESREEQADSESSESLNFSEE 417
>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
precursor [Homo sapiens]
Length = 497
Score = 54.7 bits (130), Expect = 4e-07
Identities = 60/284 (21%), Positives = 123/284 (43%), Gaps = 15/284 (5%)
Query: 726 ATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAVTFSSQ 785
A+E S P+ ++ ++ +S E D+E++ + KP ++ + S + G+ SS
Sbjct: 130 ASEESAPQGQDSAQDTTSESRELDNEDRVD-SKPEGGDSTQESESEEHWVGGGSDGESSH 188
Query: 786 GRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKPL-IPK 844
G + + S+ S R + +++ G SK+S S N + S + L P
Sbjct: 189 GDGSELDDEGMQSDDPESIRSERGNSRMNSAGMKSKESGENSEQANTQDSGGSQLLEHPS 248
Query: 845 PKPKQASAASYFQKRN--SQTNKTEEVKEENLKNVLSETPAICPPQNTENQRPKTGFQMW 902
K + S S R+ N EEVK ++ +N S + P+ K Q
Sbjct: 249 RKIFRKSRISEEDDRSELDDNNTMEEVKSDSTENSNSRDTGLSQPRRDS----KGDSQED 304
Query: 903 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTEAKKRKR 962
+EN S S N D ++ +E + + S+E ++ ++++G+ T
Sbjct: 305 SKENLSQEESQNVD-GPSSESSQEANLSSQENSSESQEEVVSESRGDNPDPTTS------ 357
Query: 963 VVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE 1006
V++ +++++ EE + L+ SK + + + ++ + F +E
Sbjct: 358 YVEDQEDSDSSEEDSSHTLSHSKSESREEQADSESSESLNFSEE 401
>gi|26665869 WD repeat domain 51B [Homo sapiens]
Length = 478
Score = 54.7 bits (130), Expect = 4e-07
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 11/170 (6%)
Query: 9 FRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICR 68
F+ H APV S+ F FLA+AS D S++VW + Q S L + + V AK
Sbjct: 98 FKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYS--LYRHTHWVRCAK---- 151
Query: 69 LAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGSIN 128
+ P +++ +K++K++ + + SD+ N V ++P G +A+ +
Sbjct: 152 --FSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSV--GFANFVDFNPSGTCIASAGSD 207
Query: 129 GLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLE 178
+ VW+V ++ + G C +++HP+ + ++G L +L+
Sbjct: 208 QTVKVWDVRVNKLLQHYQVHSGGVNC-ISFHPSGNYLITASSDGTLKILD 256
Score = 38.5 bits (88), Expect = 0.032
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 11 GHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLA 70
GH V S+ F P LASAS D +VR+W I D+ K ++ + R
Sbjct: 58 GHKDVVTSVQFSPHGNLLASASRDRTVRLW-IPDKR--------GKFSEFKAHTAPVRSV 108
Query: 71 WQPKSGKLLAIPVE-KSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGSING 129
G+ LA E KS+K++ + +F S + + +SP G+ + + S +
Sbjct: 109 DFSADGQFLATASEDKSIKVW--SMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDK 166
Query: 130 LIIVWNVETKDCMERVKHEKGYA 152
I +W+ K C+ G+A
Sbjct: 167 TIKIWDTTNKQCVNNFSDSVGFA 189
Score = 36.2 bits (82), Expect = 0.16
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Query: 2 DSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVI 61
D ++ F+GH A + SL P LA+AS D + +W A + V
Sbjct: 7 DPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRY--------VG 58
Query: 62 NAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQY 121
+ + + + P L + +++V+L+ + + + + + V +S GQ+
Sbjct: 59 HKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAH--TAPVRSVDFSADGQF 116
Query: 122 LAAGSINGLIIVWNV 136
LA S + I VW++
Sbjct: 117 LATASEDKSIKVWSM 131
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 52.4 bits (124), Expect = 2e-06
Identities = 68/313 (21%), Positives = 121/313 (38%), Gaps = 55/313 (17%)
Query: 691 ELAVEKAAELTATQVEEEEEEEDF----RKKLNAGYSNTATEWSQPRFRNQVEEDAEDSG 746
E+ ++ + T + +E EE + F KKLN + E P + + D
Sbjct: 392 EIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIK-NRGLKEGMNPSYDEYADSD----- 445
Query: 747 EADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAVTFSSQGRVNPFKVSASSKEPAMSMNS 806
+D+ + + + + N++D S SG T S F ++ A +S
Sbjct: 446 --EDQHDAYLERMKEEGKIREENANDSSDDSGEETDES------FNPGEEEEDVAEEFDS 497
Query: 807 ARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKPLIPKPKPKQASAASYFQKRNSQTNKT 866
S + N G S + +EK K KQ A + R S+ K
Sbjct: 498 NASASSSSNEGDSDR----------DEK-----------KRKQLKKAKMAKDRKSR-KKP 535
Query: 867 EEVKEENLKNVLSETPAICPPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKE 926
EVK+ N +RP + + +WL +R I SD+P S D+ K+
Sbjct: 536 VEVKKGKDPNA--------------PKRPMSAYMLWLNASREKIKSDHPGIS-ITDLSKK 580
Query: 927 GMIRFRVLSTEERKVWANKAKGETASEGTEAKKRKRVVDESDETENQEEKAKENLNLSKK 986
++ +S E+++ W KA+ K+ + ES + + ++K K + + KK
Sbjct: 581 AGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKK 640
Query: 987 QKPLDFSTNQKLS 999
P S+++ S
Sbjct: 641 STPSRGSSSKSSS 653
>gi|109948304 smu-1 suppressor of mec-8 and unc-52 homolog [Homo
sapiens]
Length = 513
Score = 52.0 bits (123), Expect = 3e-06
Identities = 31/141 (21%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 6 QKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKS 65
Q F D VL + F LA+ + DG ++VW+I C + + ++K
Sbjct: 257 QDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRF-------ERAHSKG 309
Query: 66 ICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAG 125
+ L++ S ++L+ +++++++ +S + + S +N T++ G Y+ +
Sbjct: 310 VTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGH--SSFVNEATFTQDGHYIISA 367
Query: 126 SINGLIIVWNVETKDCMERVK 146
S +G + +WN++T +C K
Sbjct: 368 SSDGTVKIWNMKTTECSNTFK 388
Score = 35.8 bits (81), Expect = 0.21
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 69 LAWQPKSGKLLAIPVEKSVKLYR---------RESWSHQFDLSDNFISQT-LNIVTWSPC 118
L WQ G L P ++ L+R E + Q F ++ + +SP
Sbjct: 169 LKWQQHQGLL---PPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPD 225
Query: 119 GQYLAAGSINGLIIVWNVETKDCMERVKHE 148
GQYL GS++G I VWN T + +K++
Sbjct: 226 GQYLVTGSVDGFIEVWNFTTGKIRKDLKYQ 255
>gi|16554629 WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 50.8 bits (120), Expect = 6e-06
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 34/187 (18%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPL---------LQKC 57
KT +GH V +F+P+ + S S D SVR+W + C + P +
Sbjct: 123 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Query: 58 NDVINAKS---ICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVT 114
+I + S +CR+ W SG+ L ++ DN ++ V
Sbjct: 183 GSLIVSSSYDGLCRI-WDTASGQCLKTLID-----------------DDN---PPVSFVK 221
Query: 115 WSPCGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLA-WHPTCGRISYTDAEGN 173
+SP G+Y+ A +++ + +W+ C++ K C A + T G+ + +E N
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 174 LGLLENV 180
L + N+
Sbjct: 282 LVYIWNL 288
Score = 47.0 bits (110), Expect = 9e-05
Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
KT H PV ++ F+ + S+S DG R+W + C + L+ N ++
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT--LIDDDNPPVSF--- 219
Query: 67 CRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCG-QYLAAG 125
+ + P +LA ++ ++KL+ + + + +S G +++ +G
Sbjct: 220 --VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 126 SINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPT 161
S + L+ +WN++TK+ +++++ I A HPT
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVI-STACHPT 312
Score = 44.3 bits (103), Expect = 6e-04
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 8 TFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAK--S 65
T GH V S+ F P +LAS+S D +++W D K I+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----------GKFEKTISGHKLG 89
Query: 66 ICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAG 125
I +AW S L++ +K++K++ S L + S + ++P + +G
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSG 147
Query: 126 SINGLIIVWNVETKDCME 143
S + + +W+V+T C++
Sbjct: 148 SFDESVRIWDVKTGKCLK 165
Score = 40.4 bits (93), Expect = 0.008
Identities = 29/142 (20%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 2 DSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVI 61
D +KT GH + +++ L SAS D ++++W +S C L+
Sbjct: 76 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC------LKTLKGHS 129
Query: 62 NAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQY 121
N C + P+S +++ ++SV+++ ++ L + S ++ V ++ G
Sbjct: 130 NYVFCCN--FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH--SDPVSAVHFNRDGSL 185
Query: 122 LAAGSINGLIIVWNVETKDCME 143
+ + S +GL +W+ + C++
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLK 207
>gi|16554627 WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 50.8 bits (120), Expect = 6e-06
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 34/187 (18%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPL---------LQKC 57
KT +GH V +F+P+ + S S D SVR+W + C + P +
Sbjct: 123 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Query: 58 NDVINAKS---ICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVT 114
+I + S +CR+ W SG+ L ++ DN ++ V
Sbjct: 183 GSLIVSSSYDGLCRI-WDTASGQCLKTLID-----------------DDN---PPVSFVK 221
Query: 115 WSPCGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLA-WHPTCGRISYTDAEGN 173
+SP G+Y+ A +++ + +W+ C++ K C A + T G+ + +E N
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 174 LGLLENV 180
L + N+
Sbjct: 282 LVYIWNL 288
Score = 47.0 bits (110), Expect = 9e-05
Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
KT H PV ++ F+ + S+S DG R+W + C + L+ N ++
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT--LIDDDNPPVSF--- 219
Query: 67 CRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCG-QYLAAG 125
+ + P +LA ++ ++KL+ + + + +S G +++ +G
Sbjct: 220 --VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 126 SINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPT 161
S + L+ +WN++TK+ +++++ I A HPT
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVI-STACHPT 312
Score = 44.3 bits (103), Expect = 6e-04
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 8 TFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAK--S 65
T GH V S+ F P +LAS+S D +++W D K I+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----------GKFEKTISGHKLG 89
Query: 66 ICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAG 125
I +AW S L++ +K++K++ S L + S + ++P + +G
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSG 147
Query: 126 SINGLIIVWNVETKDCME 143
S + + +W+V+T C++
Sbjct: 148 SFDESVRIWDVKTGKCLK 165
Score = 40.4 bits (93), Expect = 0.008
Identities = 29/142 (20%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 2 DSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVI 61
D +KT GH + +++ L SAS D ++++W +S C L+
Sbjct: 76 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC------LKTLKGHS 129
Query: 62 NAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQY 121
N C + P+S +++ ++SV+++ ++ L + S ++ V ++ G
Sbjct: 130 NYVFCCN--FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH--SDPVSAVHFNRDGSL 185
Query: 122 LAAGSINGLIIVWNVETKDCME 143
+ + S +GL +W+ + C++
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLK 207
>gi|239787764 WD repeat domain 51A isoform 3 [Homo sapiens]
Length = 369
Score = 50.8 bits (120), Expect = 6e-06
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 5 QQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAK 64
+ FR H A V S+ F +AS D +V+VW Q S L Q N V AK
Sbjct: 57 ESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFS--LSQHINWVRCAK 114
Query: 65 SICRLAWQPKSGKLLAIPVEKSVKLYRRESWS--HQFDLSDNFISQTLNIVTWSPCGQYL 122
+ P +++ +K+VKL+ + S H + F++ V + P G +
Sbjct: 115 ------FSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVT----YVDFHPSGTCI 164
Query: 123 AAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLE 178
AA ++ + VW+V T ++ + A+ GL++HP+ + ++ L +L+
Sbjct: 165 AAAGMDNTVKVWDVRTHRLLQHYQLHSA-AVNGLSFHPSGNYLITASSDSTLKILD 219
Score = 35.8 bits (81), Expect = 0.21
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 24/130 (18%)
Query: 12 HDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLAW 71
H V + F P +A+A D +V+VW + LLQ +++ ++ L++
Sbjct: 148 HGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHR------LLQHYQ--LHSAAVNGLSF 199
Query: 72 QPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLN-------IVTWSPCGQYLAA 124
P L+ + ++K+ DL + + TL+ V +S G+Y A+
Sbjct: 200 HPSGNYLITASSDSTLKI---------LDLMEGRLLYTLHGHQGPATTVAFSRTGEYFAS 250
Query: 125 GSINGLIIVW 134
G + ++VW
Sbjct: 251 GGSDEQVMVW 260
>gi|239787760 WD repeat domain 51A isoform 2 [Homo sapiens]
Length = 359
Score = 50.8 bits (120), Expect = 6e-06
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 5 QQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAK 64
+ FR H A V S+ F +AS D +V+VW Q S L Q N V AK
Sbjct: 95 ESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFS--LSQHINWVRCAK 152
Query: 65 SICRLAWQPKSGKLLAIPVEKSVKLYRRESWS--HQFDLSDNFISQTLNIVTWSPCGQYL 122
+ P +++ +K+VKL+ + S H + F++ V + P G +
Sbjct: 153 ------FSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVT----YVDFHPSGTCI 202
Query: 123 AAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLE 178
AA ++ + VW+V T ++ + A+ GL++HP+ + ++ L +L+
Sbjct: 203 AAAGMDNTVKVWDVRTHRLLQHYQLHSA-AVNGLSFHPSGNYLITASSDSTLKILD 257
Score = 35.8 bits (81), Expect = 0.21
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 24/130 (18%)
Query: 12 HDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLAW 71
H V + F P +A+A D +V+VW + LLQ +++ ++ L++
Sbjct: 186 HGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHR------LLQHYQ--LHSAAVNGLSF 237
Query: 72 QPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLN-------IVTWSPCGQYLAA 124
P L+ + ++K+ DL + + TL+ V +S G+Y A+
Sbjct: 238 HPSGNYLITASSDSTLKI---------LDLMEGRLLYTLHGHQGPATTVAFSRTGEYFAS 288
Query: 125 GSINGLIIVW 134
G + ++VW
Sbjct: 289 GGSDEQVMVW 298
Score = 32.3 bits (72), Expect = 2.3
Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 37/194 (19%)
Query: 2 DSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVI 61
D S ++ F+GH V + F LAS S D + VW + Q+ A + + +
Sbjct: 8 DPSLERHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCV 67
Query: 62 NAKSICRLAWQPKSGKLLAIPV----------------------------------EKSV 87
N L K + I V +K+V
Sbjct: 68 NFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTV 127
Query: 88 KLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKH 147
K++ F LS + + +SP G+ + + S + + +W+ +++C+
Sbjct: 128 KVWATHRQKFLFSLSQHI--NWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCE 185
Query: 148 EKGYAICGLAWHPT 161
G+ + + +HP+
Sbjct: 186 HGGF-VTYVDFHPS 198
>gi|239787754 WD repeat domain 51A isoform 1 [Homo sapiens]
Length = 407
Score = 50.8 bits (120), Expect = 6e-06
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 5 QQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAK 64
+ FR H A V S+ F +AS D +V+VW Q S L Q N V AK
Sbjct: 95 ESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFS--LSQHINWVRCAK 152
Query: 65 SICRLAWQPKSGKLLAIPVEKSVKLYRRESWS--HQFDLSDNFISQTLNIVTWSPCGQYL 122
+ P +++ +K+VKL+ + S H + F++ V + P G +
Sbjct: 153 ------FSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVT----YVDFHPSGTCI 202
Query: 123 AAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLE 178
AA ++ + VW+V T ++ + A+ GL++HP+ + ++ L +L+
Sbjct: 203 AAAGMDNTVKVWDVRTHRLLQHYQLHSA-AVNGLSFHPSGNYLITASSDSTLKILD 257
Score = 35.8 bits (81), Expect = 0.21
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 24/130 (18%)
Query: 12 HDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLAW 71
H V + F P +A+A D +V+VW + LLQ +++ ++ L++
Sbjct: 186 HGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHR------LLQHYQ--LHSAAVNGLSF 237
Query: 72 QPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLN-------IVTWSPCGQYLAA 124
P L+ + ++K+ DL + + TL+ V +S G+Y A+
Sbjct: 238 HPSGNYLITASSDSTLKI---------LDLMEGRLLYTLHGHQGPATTVAFSRTGEYFAS 288
Query: 125 GSINGLIIVW 134
G + ++VW
Sbjct: 289 GGSDEQVMVW 298
Score = 32.3 bits (72), Expect = 2.3
Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 37/194 (19%)
Query: 2 DSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVI 61
D S ++ F+GH V + F LAS S D + VW + Q+ A + + +
Sbjct: 8 DPSLERHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCV 67
Query: 62 NAKSICRLAWQPKSGKLLAIPV----------------------------------EKSV 87
N L K + I V +K+V
Sbjct: 68 NFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTV 127
Query: 88 KLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKH 147
K++ F LS + + +SP G+ + + S + + +W+ +++C+
Sbjct: 128 KVWATHRQKFLFSLSQHI--NWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCE 185
Query: 148 EKGYAICGLAWHPT 161
G+ + + +HP+
Sbjct: 186 HGGF-VTYVDFHPS 198
>gi|4757988 WD repeat domain 39 [Homo sapiens]
Length = 339
Score = 50.1 bits (118), Expect = 1e-05
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 8 TFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINA--KS 65
T GH+ V S+++ P LA+ S D SV VW++ ++ +C V+N+ +
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-------EYECVSVLNSHTQD 152
Query: 66 ICRLAWQPKSGKLLAIPVEKSVKLYRRE--SWSHQFDLSDNFISQTLNIVTWSPCGQYLA 123
+ + W P L + + +VKLYR E W L + T+ + + P GQ LA
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLA 210
Query: 124 AGSINGLIIVW 134
+ S + + +W
Sbjct: 211 SCSDDRTVRIW 221
Score = 47.4 bits (111), Expect = 7e-05
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 69 LAWQPKSGKLLAIPVEKSVKLYRRE--SWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGS 126
LAW P L + ++ ++++ E SW + LS+ +T+ V WSPCG YLA+ S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-QRTVRKVAWSPCGNYLASAS 80
Query: 127 INGLIIVW--NVETKDCMERVK-HEKGYAICGLAWHP------TCGR 164
+ +W N + +C+ ++ HE + +AW P TC R
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHEN--EVKSVAWAPSGNLLATCSR 125
Score = 45.8 bits (107), Expect = 2e-04
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 8 TFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQI----SDQTCAI-----SWPLLQKCN 58
T GH++ V SL+FDP LAS S D +VR+W+ ++Q A SW + +
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248
Query: 59 DVINAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSH----QFDLSDNF---ISQTLN 111
++++I +AW +G L + ++++++ + S F L+ + SQ +N
Sbjct: 249 G-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307
Query: 112 IVTWSPCGQ-YLAAGSINGLIIVWNVE 137
V W+P LA+ S +G + W +
Sbjct: 308 CVAWNPKEPGLLASCSDDGEVAFWKYQ 334
Score = 43.9 bits (102), Expect = 8e-04
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 13/148 (8%)
Query: 19 LSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINA---KSICRLAWQPKS 75
L+++P LAS D +R+W SW C V++ +++ ++AW P
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGD----SWI----CKSVLSEGHQRTVRKVAWSPCG 73
Query: 76 GKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWN 135
L + + + ++++ + + + V W+P G LA S + + VW
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 136 VETKDCMERVKHEKGYA--ICGLAWHPT 161
V+ +D E V + + + WHP+
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPS 161
Score = 42.4 bits (98), Expect = 0.002
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 26/167 (15%)
Query: 11 GHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLA 70
GH V +++ P +LASAS D + +W+ + L N+V KS+ A
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEV---KSV---A 112
Query: 71 WQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSD--------NFISQTLNIVTWSPCGQYL 122
W P L +KSV W + D D N +Q + V W P + L
Sbjct: 113 WAPSGNLLATCSRDKSV-------WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 123 AAGSINGLIIVWNVETKD---CMERVKHEKGYAICGLAWHPTCGRIS 166
A+ S + + ++ E D C HE + LA+ P+ R++
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHES--TVWSLAFDPSGQRLA 210
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 48.1 bits (113), Expect = 4e-05
Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 17/199 (8%)
Query: 706 EEEEEEEDFRKKLNAGYSNTATEWSQPRFRNQVEEDAEDSGEAD--------DEEKPEIH 757
++ EE + ++G S++++ S + EE+ + +G+
Sbjct: 2551 QDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAA 2610
Query: 758 KPGQNSFSKSTNSSDVSAKSGAVTFSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMG 817
P +S S S++SS S+ S + + SS S+SS + S +S+ S++ +
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSS---------SSSSSSSSSSSSSSSSSSSSSSSS 2661
Query: 818 KSSKKSTALSRTTNNEKSPIIKPLIPKPKPKQASAASYFQKRNSQTNKTEEVKEENLKNV 877
SS S++ S T + P P ++ A+ K Q K K
Sbjct: 2662 SSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKT 2721
Query: 878 LSETPAICPPQNTENQRPK 896
+ P PPQ T+ +PK
Sbjct: 2722 PAPQPQAPPPQPTQPLQPK 2740
>gi|21071067 TBP-associated factor 5 [Homo sapiens]
Length = 800
Score = 47.8 bits (112), Expect = 5e-05
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 12/178 (6%)
Query: 3 SSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVIN 62
+S+ K GH PV SF P +L S+S DG+VR+W + TC + + +
Sbjct: 533 ASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYK--------GH 584
Query: 63 AKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYL 122
+ + P ++ ++ +L+ + + + + +N + P Y+
Sbjct: 585 NYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLAD--VNCTRFHPNSNYV 642
Query: 123 AAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLENV 180
A GS + + +W+V +C+ KG I L + P GR T A LL ++
Sbjct: 643 ATGSADRTVRLWDVLNGNCVRIFTGHKG-PIHSLTFSPN-GRFLATGATDGRVLLWDI 698
>gi|4557741 platelet-activating factor acetylhydrolase, isoform Ib,
alpha subunit [Homo sapiens]
Length = 410
Score = 47.0 bits (110), Expect = 9e-05
Identities = 34/168 (20%), Positives = 76/168 (45%), Gaps = 11/168 (6%)
Query: 6 QKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKS 65
++T +GH V +SFD LAS S D ++++W C + + +
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH--------GHDHN 194
Query: 66 ICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAG 125
+ +A P +++ +K++K++ ++ + + + + +V + G +A+
Sbjct: 195 VSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH--REWVRMVRPNQDGTLIASC 252
Query: 126 SINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGN 173
S + + VW V TK+C ++ + C ++W P S ++A G+
Sbjct: 253 SNDQTVRVWVVATKECKAELREHEHVVEC-ISWAPESSYSSISEATGS 299
>gi|83779014 katanin p80 subunit B 1 [Homo sapiens]
Length = 655
Score = 46.6 bits (109), Expect = 1e-04
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 7 KTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSI 66
+T GH A + SL F P F+AS S D ++++W I + C + +++++
Sbjct: 99 RTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYR--------GHSQAV 150
Query: 67 CRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGS 126
L + P L + + +VKL+ + + + + +N+V + P LA+GS
Sbjct: 151 RCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGH--TGPVNVVEFHPNEYLLASGS 208
Query: 127 INGLIIVWNVETKDCMERVKHEKG 150
+ I W++E + ++ E G
Sbjct: 209 SDRTIRFWDLEKFQVVSCIEGEPG 232
Score = 37.0 bits (84), Expect = 0.093
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 11 GHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLA 70
GH +PV S+ + + + + S GS+RVW + + I L+ + +IC L
Sbjct: 61 GHTSPVESVRLNTPEELIVAGSQSGSIRVWDL--EAAKILRTLMG------HKANICSLD 112
Query: 71 WQPKSGKLLAIPVEKSVKLY--RRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGSIN 128
+ P + + + ++KL+ RR+ ++ SQ + + +SP G++LA+ + +
Sbjct: 113 FHPYGEFVASGSQDTNIKLWDIRRKGCVFRY----RGHSQAVRCLRFSPDGKWLASAADD 168
Query: 129 GLIIVWNVETKDCMERVKHEKG 150
+ +W++ M G
Sbjct: 169 HTVKLWDLTAGKMMSEFPGHTG 190
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 46.2 bits (108), Expect = 2e-04
Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 39/303 (12%)
Query: 695 EKAAELTATQVEEEEEEEDFRKKLNAGYSNTATEWSQPRFRNQV--EEDAEDSGEADDEE 752
E+ + T Q EE +E+ + ++N+ + + E +PR+R+++ + GE+ +E+
Sbjct: 1259 EEGKKRTGKQNEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEK 1318
Query: 753 KPEIHKPGQNSFSKSTNSSDVSAKSGAVTFSSQGRVNPFKVSASSKEPAMSMNSARSTNI 812
K KP ++ K N VS++ + + V+ +VS S E SA+ +
Sbjct: 1319 KT---KPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSE-EVSESEDEQRPRTRSAKKAEL 1374
Query: 813 LDNMGKSSKKSTALSRTTNNEKSPIIKPLIPKPKPKQASAASYFQKRNSQTNKTEEVKEE 872
+N +S K+ R E S S K NS+ + E+ +EE
Sbjct: 1375 EENQ-RSYKQKKKRRRIKVQEDS------------------SSENKSNSEEEEEEKEEEE 1415
Query: 873 NLKNVLSETPAICPPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFR 932
+ E +N +++ P G + IL D+ ++ + +KE R +
Sbjct: 1416 EEEEEEEEEE---EDENDDSKSPGKG-----RKKIRKILKDDKLRTETQNALKEEEERRK 1467
Query: 933 VLSTEERKVWANKAKGETASEGTEAKK----RKRVVDESDETENQEEKAKENLNLSKKQK 988
++ ER+ K + E K K V+DE +ET+ + N+ + K
Sbjct: 1468 RIAERERE--REKLREVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHRNMVIKLKPH 1525
Query: 989 PLD 991
+D
Sbjct: 1526 QVD 1528
Score = 32.7 bits (73), Expect = 1.8
Identities = 65/299 (21%), Positives = 114/299 (38%), Gaps = 55/299 (18%)
Query: 740 EDAEDSGEADDEEKPEIHKPGQNSFSK----STNSSDVSAKSGAVTFSSQGRVNPFKV-- 793
ED + A EK G++S + S+++ S K SS R+ ++
Sbjct: 1040 EDKKSKNGAYGREKKRCKLLGKSSRKRQDCSSSDTEKYSMKEDGCN-SSDKRLKRIELRE 1098
Query: 794 --SASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKP-----LIPKPK 846
+ SSK + S S++ + + +KK RT++ +K+ I+K L K
Sbjct: 1099 RRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKK--QRTSSKKKAVIVKEKKRNSLRTSTK 1156
Query: 847 PKQASAASYFQK------RNS---QTNKTEEVKEENLKNVLSETPAICPPQNTE------ 891
KQA S +NS ++ +++K VLS C E
Sbjct: 1157 RKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGFCQSSGDEALSKSV 1216
Query: 892 -----------NQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEE-- 938
+ + +M LEE ++N+ SD SD D +EG R + E
Sbjct: 1217 PVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSD--DEPEEGKKRTGKQNEENPG 1274
Query: 939 RKVWANKAKGETASEGTEAKK---------RKRVVDESDETENQEEKAKENLNLSKKQK 988
+ N+ E+ S+ E+KK K V + + E ++ K KE+ + + +
Sbjct: 1275 DEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNR 1333
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 46.2 bits (108), Expect = 2e-04
Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 39/303 (12%)
Query: 695 EKAAELTATQVEEEEEEEDFRKKLNAGYSNTATEWSQPRFRNQV--EEDAEDSGEADDEE 752
E+ + T Q EE +E+ + ++N+ + + E +PR+R+++ + GE+ +E+
Sbjct: 1297 EEGKKRTGKQNEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEK 1356
Query: 753 KPEIHKPGQNSFSKSTNSSDVSAKSGAVTFSSQGRVNPFKVSASSKEPAMSMNSARSTNI 812
K KP ++ K N VS++ + + V+ +VS S E SA+ +
Sbjct: 1357 KT---KPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSE-EVSESEDEQRPRTRSAKKAEL 1412
Query: 813 LDNMGKSSKKSTALSRTTNNEKSPIIKPLIPKPKPKQASAASYFQKRNSQTNKTEEVKEE 872
+N +S K+ R E S S K NS+ + E+ +EE
Sbjct: 1413 EENQ-RSYKQKKKRRRIKVQEDS------------------SSENKSNSEEEEEEKEEEE 1453
Query: 873 NLKNVLSETPAICPPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFR 932
+ E +N +++ P G + IL D+ ++ + +KE R +
Sbjct: 1454 EEEEEEEEEE---EDENDDSKSPGKG-----RKKIRKILKDDKLRTETQNALKEEEERRK 1505
Query: 933 VLSTEERKVWANKAKGETASEGTEAKK----RKRVVDESDETENQEEKAKENLNLSKKQK 988
++ ER+ K + E K K V+DE +ET+ + N+ + K
Sbjct: 1506 RIAERERE--REKLREVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHRNMVIKLKPH 1563
Query: 989 PLD 991
+D
Sbjct: 1564 QVD 1566
Score = 32.7 bits (73), Expect = 1.8
Identities = 65/299 (21%), Positives = 114/299 (38%), Gaps = 55/299 (18%)
Query: 740 EDAEDSGEADDEEKPEIHKPGQNSFSK----STNSSDVSAKSGAVTFSSQGRVNPFKV-- 793
ED + A EK G++S + S+++ S K SS R+ ++
Sbjct: 1078 EDKKSKNGAYGREKKRCKLLGKSSRKRQDCSSSDTEKYSMKEDGCN-SSDKRLKRIELRE 1136
Query: 794 --SASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKP-----LIPKPK 846
+ SSK + S S++ + + +KK RT++ +K+ I+K L K
Sbjct: 1137 RRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKK--QRTSSKKKAVIVKEKKRNSLRTSTK 1194
Query: 847 PKQASAASYFQK------RNS---QTNKTEEVKEENLKNVLSETPAICPPQNTE------ 891
KQA S +NS ++ +++K VLS C E
Sbjct: 1195 RKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGFCQSSGDEALSKSV 1254
Query: 892 -----------NQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEE-- 938
+ + +M LEE ++N+ SD SD D +EG R + E
Sbjct: 1255 PVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSD--DEPEEGKKRTGKQNEENPG 1312
Query: 939 RKVWANKAKGETASEGTEAKK---------RKRVVDESDETENQEEKAKENLNLSKKQK 988
+ N+ E+ S+ E+KK K V + + E ++ K KE+ + + +
Sbjct: 1313 DEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNR 1371
>gi|88759339 aster-associated protein [Homo sapiens]
Length = 647
Score = 45.8 bits (107), Expect = 2e-04
Identities = 83/360 (23%), Positives = 139/360 (38%), Gaps = 59/360 (16%)
Query: 677 ASRSRKLILAQKLSELAVEKAAELTATQVEEEEEEEDFRKKLNAGYSNTATEWSQPRFRN 736
AS S K IL S +E A+ + EE + L + N +S
Sbjct: 244 ASSSLKQILGDSFSP-----GSEGNASGKDPNEEITENHNSLKSD-ENKENSFSADHVTT 297
Query: 737 QVEEDAEDSGEADDEE----KPEIHKPGQNSFSKSTNSSDVSAKSGAVTFSSQGRVNPFK 792
VE+ E ADD E K E+ + + S S + T SS+ +
Sbjct: 298 AVEKSKESQVTADDLEEEKAKAELIMDDDRTVDPLLSKSQSILISTSATASSKKTIEDRN 357
Query: 793 VSASSKEPAMSMNSARSTNILDN--MGKSSKKSTALSRTTNNEKSPIIKPLIPKPKPKQA 850
+ +K+ + S+ S ++ + + KSS K S TT++ +K L KP KQ+
Sbjct: 358 IK--NKKSTNNRASSASARLMTSEFLKKSSSKRRTPSTTTSSHYLGTLKVLDQKPSQKQS 415
Query: 851 ---------SAASY---FQKRN---SQTNKTEEVKEENLKNVLSETPAICPPQNTENQRP 895
AA Y +K+N + ++ + ++ ENL+ + A + +
Sbjct: 416 IEPDRADNIRAAVYQEWLEKKNVYLHEMHRIKRIESENLRIQNEQKKA------AKREEA 469
Query: 896 KTGFQMW--LEEN-------RSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKA 946
F+ W ++E + + N ++E + ++G +E+K+ K
Sbjct: 470 LASFEAWKAMKEKEAKKIAAKKRLEEKNKKKTEEENAARKGEALQAFEKWKEKKMEYLKE 529
Query: 947 KGETASEGTEAKKRKRVVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE 1006
K E AKK+K E E EK K+NL +K N+K AF FKQ+
Sbjct: 530 KNRKEREYERAKKQK-------EEETVAEKKKDNLTAVEK-------WNEKKEAF-FKQK 574
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,370,431
Number of Sequences: 37866
Number of extensions: 1979145
Number of successful extensions: 9778
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 394
Number of HSP's that attempted gapping in prelim test: 7783
Number of HSP's gapped (non-prelim): 1940
length of query: 1006
length of database: 18,247,518
effective HSP length: 112
effective length of query: 894
effective length of database: 14,006,526
effective search space: 12521834244
effective search space used: 12521834244
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.