Guide to the Human Genome
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Name: TBL1X Sequence: fasta or formatted (577aa) NCBI GI: 213021186
Description:

transducin beta-like 1X isoform a

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [526aa] transducin beta-like 1X isoform b
alt prot [526aa] transducin beta-like 1X isoform b
alt mRNA [577aa] transducin beta-like 1X isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         55           8
 C cysteine            2.4         14           2
 D aspartate           5.2         30           2
 E glutamate           5.0         29           2
 F phenylalanine       3.3         19           1
 G glycine             8.0         46           2
 H histidine           4.0         23           2
 I isoleucine          5.4         31           2
 K lysine              4.0         23           1
 L leucine             6.6         38           2
 M methionine          1.7         10           1
 N asparagine          5.7         33           2
 P proline             3.6         21           2
 Q glutamine           4.0         23           3
 R arginine            4.3         25           1
 S serine             10.4         60           3
 T threonine           6.9         40           3
 V valine              6.1         35           2
 W tryptophan          2.3         13           1
 Y tyrosine            1.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transducin beta-like 1X isoform a 
TBL1X                 1.000   transducin beta-like 1X isoform a 
TBL1X                 0.909   transducin beta-like 1X isoform b 
TBL1X                 0.909   transducin beta-like 1X isoform b 
TBL1Y                 0.830   transducin beta-like 1Y 
TBL1Y                 0.830   transducin beta-like 1Y 
TBL1Y                 0.830   transducin beta-like 1Y 
TBL1XR1               0.793   transducin (beta)-like 1 X-linked receptor 1 
LOC100291233          0.140   PREDICTED: hypothetical protein XP_002346868 
LOC100287918          0.140   PREDICTED: hypothetical protein XP_002342710 
LOC100292902          0.109   PREDICTED: similar to transducin (beta)-like 1 X-li...
WDR69                 0.098   WD repeat domain 69 
WDR51B                0.090   WD repeat domain 51B 
WDR17                 0.086   WD repeat domain 17 isoform 2 
WDR17                 0.086   WD repeat domain 17 isoform 1 
WDR5                  0.085   WD repeat domain 5 
WDR5                  0.085   WD repeat domain 5 
CIAO1                 0.085   WD repeat domain 39 
NLE1                  0.082   Notchless gene homolog isoform a 
WDR5B                 0.081   WD repeat domain 5B 
PAFAH1B1              0.078   platelet-activating factor acetylhydrolase, isoform I...
WDR51A                0.078   WD repeat domain 51A isoform 2 
WDR51A                0.078   WD repeat domain 51A isoform 1 
FBXW7                 0.076   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.076   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.076   F-box and WD repeat domain containing 7 isoform 2 [H...
TAF5                  0.075   TBP-associated factor 5 
TAF5L                 0.069   PCAF associated factor 65 beta isoform a 
GNB5                  0.069   guanine nucleotide-binding protein, beta-5 subunit i...
WDR51A                0.067   WD repeat domain 51A isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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